RNA–Protein interactions for RNA: ENST00000375271.4

PTCH1-202, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,058 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-202ENST00000375271 RNF126Q9BV68 326 aa10.29□□□□□ -0.76
PTCH1-202ENST00000375271 TXNL4BQ9NX01 149 aaKnown RBP10.29□□□□□ -0.76
PTCH1-202ENST00000375271 TRAV2A0A0B4J234 112 aa10.28□□□□□ -0.76
PTCH1-202ENST00000375271 IGHV3-48P01763 117 aa10.28□□□□□ -0.76
PTCH1-202ENST00000375271 NPY1RP25929 384 aa10.28□□□□□ -0.76
PTCH1-202ENST00000375271 EIF2B2P49770 351 aaKnown RBP10.28□□□□□ -0.76
PTCH1-202ENST00000375271 SCAND1P57086 179 aa10.28□□□□□ -0.76
PTCH1-202ENST00000375271 SOHLH1Q5JUK2 328 aa10.28□□□□□ -0.76
PTCH1-202ENST00000375271 UBE2DNLQ8IWF7 75 aa10.28□□□□□ -0.76
PTCH1-202ENST00000375271 FCAMRQ8WWV6 532 aa10.28□□□□□ -0.76
PTCH1-202ENST00000375271 ZNF2Q9BSG1 426 aaPredicted RBP10.28□□□□□ -0.76
PTCH1-202ENST00000375271 TBC1D24Q9ULP9 559 aa10.28□□□□□ -0.76
PTCH1-202ENST00000375271 DEFB131BA0A096LNP1 70 aa10.27□□□□□ -0.77
PTCH1-202ENST00000375271 MEIS3P1A6NDR6 274 aa10.27□□□□□ -0.77
PTCH1-202ENST00000375271 M0R2N4 97 aa10.27□□□□□ -0.77
PTCH1-202ENST00000375271 PGLYRP1O75594 196 aaPredicted RBP10.27□□□□□ -0.77
PTCH1-202ENST00000375271 NPPCP23582 126 aa10.27□□□□□ -0.77
PTCH1-202ENST00000375271 GNRHRP30968 328 aa10.27□□□□□ -0.77
PTCH1-202ENST00000375271 FGF9P31371 208 aaPredicted RBP10.27□□□□□ -0.77
PTCH1-202ENST00000375271 SNCAP37840 140 aa10.27□□□□□ -0.77
PTCH1-202ENST00000375271 HSPA13P48723 471 aa10.27□□□□□ -0.77
PTCH1-202ENST00000375271 TAS2R46P59540 309 aa10.27□□□□□ -0.77
PTCH1-202ENST00000375271 MXD1Q05195 221 aa10.27□□□□□ -0.77
PTCH1-202ENST00000375271 IDNKQ5T6J7 187 aa10.27□□□□□ -0.77
PTCH1-202ENST00000375271 FAM90A2PQ658T7 463 aa10.27□□□□□ -0.77
PTCH1-202ENST00000375271 TOMM20LQ6UXN7 152 aa10.27□□□□□ -0.77
PTCH1-202ENST00000375271 ZNF600Q6ZNG1 722 aa10.27□□□□□ -0.77
PTCH1-202ENST00000375271 H2BFWTQ7Z2G1 175 aa10.27□□□□□ -0.77
PTCH1-202ENST00000375271 OR5H2Q8NGV7 314 aa10.27□□□□□ -0.77
PTCH1-202ENST00000375271 GRAMD2BQ96HH9 432 aa10.27□□□□□ -0.77
PTCH1-202ENST00000375271 TMEM14BQ9NUH8 114 aa10.27□□□□□ -0.77
PTCH1-202ENST00000375271 PUS1Q9Y606 427 aaKnown RBP eCLIP10.27□□□□□ -0.77
PTCH1-202ENST00000375271 I3L2K1 104 aa10.26□□□□□ -0.77
PTCH1-202ENST00000375271 GPR31O00270 319 aa10.26□□□□□ -0.77
PTCH1-202ENST00000375271 IFNA10P01566 189 aa10.26□□□□□ -0.77
PTCH1-202ENST00000375271 IFNA21P01568 189 aa10.26□□□□□ -0.77
PTCH1-202ENST00000375271 IFNA17P01571 189 aa10.26□□□□□ -0.77
PTCH1-202ENST00000375271 NUTF2P61970 127 aaKnown RBP10.26□□□□□ -0.77
PTCH1-202ENST00000375271 UBE2UQ5VVX9 321 aa10.26□□□□□ -0.77
PTCH1-202ENST00000375271 POM121L12Q8N7R1 296 aa10.26□□□□□ -0.77
PTCH1-202ENST00000375271 ZNF414Q96IQ9 312 aa10.26□□□□□ -0.77
PTCH1-202ENST00000375271 METTL26Q96S19 204 aa10.26□□□□□ -0.77
PTCH1-202ENST00000375271 PDCD10Q9BUL8 212 aa10.26□□□□□ -0.77
PTCH1-202ENST00000375271 AUNIPQ9H7T9 357 aa10.26□□□□□ -0.77
PTCH1-202ENST00000375271 RYR1P21817 5038 aa10.25□□□□□ -0.77
PTCH1-202ENST00000375271 AMBPP02760 352 aa10.25□□□□□ -0.77
PTCH1-202ENST00000375271 ZNF688P0C7X2 276 aa10.25□□□□□ -0.77
PTCH1-202ENST00000375271 RBMY1A1P0DJD3 496 aaKnown RBP10.25□□□□□ -0.77
PTCH1-202ENST00000375271 RBMY1CP0DJD4 496 aa10.25□□□□□ -0.77
PTCH1-202ENST00000375271 SDC2P34741 201 aa10.25□□□□□ -0.77
PTCH1-202ENST00000375271 RBMY1FQ15415 496 aaKnown RBP10.25□□□□□ -0.77
PTCH1-202ENST00000375271 ACTL10Q5JWF8 245 aa10.25□□□□□ -0.77
PTCH1-202ENST00000375271 CADM3Q8N126 398 aa10.25□□□□□ -0.77
PTCH1-202ENST00000375271 SLC35G3Q8N808 338 aa10.25□□□□□ -0.77
PTCH1-202ENST00000375271 OR6F1Q8NGZ6 308 aa10.25□□□□□ -0.77
PTCH1-202ENST00000375271 FCGR1BQ92637 280 aa10.25□□□□□ -0.77
PTCH1-202ENST00000375271 C1QTNF4Q9BXJ3 329 aa10.25□□□□□ -0.77
PTCH1-202ENST00000375271 VSIRQ9H7M9 311 aa10.25□□□□□ -0.77
PTCH1-202ENST00000375271 DNAH6Q9C0G6 4158 aa10.25□□□□□ -0.77
PTCH1-202ENST00000375271 VPS13DQ5THJ4 4388 aa10.24□□□□□ -0.77
PTCH1-202ENST00000375271 CORTO00230 105 aa10.24□□□□□ -0.77
PTCH1-202ENST00000375271 PMP2P02689 132 aa10.24□□□□□ -0.77
PTCH1-202ENST00000375271 SUB1P53999 127 aaKnown RBP eCLIP10.24□□□□□ -0.77
PTCH1-202ENST00000375271 TSPAN5P62079 268 aa10.24□□□□□ -0.77
PTCH1-202ENST00000375271 PRCDQ00LT1 54 aa10.24□□□□□ -0.77
PTCH1-202ENST00000375271 PHLDA2Q53GA4 152 aa10.24□□□□□ -0.77
PTCH1-202ENST00000375271 LPCAT3Q6P1A2 487 aa10.24□□□□□ -0.77
PTCH1-202ENST00000375271 TRPT1Q86TN4 253 aaKnown RBP10.24□□□□□ -0.77
PTCH1-202ENST00000375271 ZNF114Q8NC26 417 aa10.24□□□□□ -0.77
PTCH1-202ENST00000375271 OR5H6Q8NGV6 325 aa10.24□□□□□ -0.77
PTCH1-202ENST00000375271 TMEM230Q96A57 120 aa10.24□□□□□ -0.77
PTCH1-202ENST00000375271 ENY2Q9NPA8 101 aa10.24□□□□□ -0.77
PTCH1-202ENST00000375271 CLEC5AQ9NY25 188 aa10.24□□□□□ -0.77
PTCH1-202ENST00000375271 LOC100506127A0A0U1RQW1 187 aa10.23□□□□□ -0.77
PTCH1-202ENST00000375271 KNCNA6PVL3 124 aa10.23□□□□□ -0.77
PTCH1-202ENST00000375271 APOHP02749 345 aaPredicted RBP10.23□□□□□ -0.77
PTCH1-202ENST00000375271 RFX2P48378 723 aa10.23□□□□□ -0.77
PTCH1-202ENST00000375271 GABARAPL2P60520 117 aa10.23□□□□□ -0.77
PTCH1-202ENST00000375271 KCTD21Q4G0X4 260 aa10.23□□□□□ -0.77
PTCH1-202ENST00000375271 ZNF767PQ75MW2 155 aa10.23□□□□□ -0.77
PTCH1-202ENST00000375271 FAM24BQ8N5W8 94 aa10.23□□□□□ -0.77
PTCH1-202ENST00000375271 SLC25A38Q96DW6 304 aa10.23□□□□□ -0.77
PTCH1-202ENST00000375271 S100A16Q96FQ6 103 aaKnown RBP10.23□□□□□ -0.77
PTCH1-202ENST00000375271 ELOA3CA0A087WX78 387 aaPredicted RBP10.22□□□□□ -0.77
PTCH1-202ENST00000375271 A0A1B0GVY2 172 aa10.22□□□□□ -0.77
PTCH1-202ENST00000375271 DBX1A6NMT0 343 aa10.22□□□□□ -0.77
PTCH1-202ENST00000375271 ZNF705EA8MWA4 302 aaPredicted RBP10.22□□□□□ -0.77
PTCH1-202ENST00000375271 C4BPBP20851 252 aa10.22□□□□□ -0.77
PTCH1-202ENST00000375271 P2RY1P47900 373 aa10.22□□□□□ -0.77
PTCH1-202ENST00000375271 HSPE1P61604 102 aaKnown RBP10.22□□□□□ -0.77
PTCH1-202ENST00000375271 DHRS2Q13268 280 aa10.22□□□□□ -0.77
PTCH1-202ENST00000375271 TMEM69Q5SWH9 247 aa10.22□□□□□ -0.77
PTCH1-202ENST00000375271 DHRS11Q6UWP2 260 aa10.22□□□□□ -0.77
PTCH1-202ENST00000375271 IZUMO2Q6UXV1 221 aa10.22□□□□□ -0.77
PTCH1-202ENST00000375271 HELTA6NFD8 242 aa10.21□□□□□ -0.77
PTCH1-202ENST00000375271 K7EQG2 157 aa10.21□□□□□ -0.77
PTCH1-202ENST00000375271 ATG12O94817 140 aa10.21□□□□□ -0.77
PTCH1-202ENST00000375271 OPRK1P41145 380 aa10.21□□□□□ -0.77
PTCH1-202ENST00000375271 HOXA1P49639 335 aaPredicted RBP10.21□□□□□ -0.77
PTCH1-202ENST00000375271 SNRPD3P62318 126 aaKnown RBP10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms