RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 TMEM144Q7Z5S9 345 aa10.96□□□□□ -0.66
PTPRF-202ENST00000372405 OR10G4Q8NGN3 311 aa10.96□□□□□ -0.66
PTPRF-202ENST00000372405 OR10G9Q8NGN4 311 aa10.96□□□□□ -0.66
PTPRF-202ENST00000372405 OR10G7Q8NGN6 311 aa10.96□□□□□ -0.66
PTPRF-202ENST00000372405 OR2T6Q8NHC8 308 aa10.96□□□□□ -0.66
PTPRF-202ENST00000372405 SSMEM1Q8WWF3 244 aa10.96□□□□□ -0.66
PTPRF-202ENST00000372405 SLC25A22Q9H936 323 aa10.96□□□□□ -0.66
PTPRF-202ENST00000372405 MRPL36Q9P0J6 103 aaKnown RBP10.96□□□□□ -0.66
PTPRF-202ENST00000372405 KIAA1456Q9P272 454 aa10.96□□□□□ -0.66
PTPRF-202ENST00000372405 PXMP4Q9Y6I8 212 aa10.96□□□□□ -0.66
PTPRF-202ENST00000372405 CR1P17927 2039 aa10.95□□□□□ -0.66
PTPRF-202ENST00000372405 TRAV40A0A0B4J280 105 aa10.95□□□□□ -0.66
PTPRF-202ENST00000372405 IGHV1-69DA0A0B4J2H0 117 aa10.95□□□□□ -0.66
PTPRF-202ENST00000372405 IGHV1-69P01742 117 aa10.95□□□□□ -0.66
PTPRF-202ENST00000372405 IGHV4-38-2P0DP08 117 aa10.95□□□□□ -0.66
PTPRF-202ENST00000372405 M6PRP20645 277 aa10.95□□□□□ -0.66
PTPRF-202ENST00000372405 GPX4P36969 197 aaPredicted RBP10.95□□□□□ -0.66
PTPRF-202ENST00000372405 DEFB113Q30KQ7 82 aa10.95□□□□□ -0.66
PTPRF-202ENST00000372405 BRD3OSQ6XYD6 125 aa10.95□□□□□ -0.66
PTPRF-202ENST00000372405 RNASEH2CQ8TDP1 164 aaKnown RBP10.95□□□□□ -0.66
PTPRF-202ENST00000372405 MAP1LC3B2A6NCE7 125 aa10.94□□□□□ -0.66
PTPRF-202ENST00000372405 B4DSR2 109 aa10.94□□□□□ -0.66
PTPRF-202ENST00000372405 HMGB3O15347 200 aaKnown RBP10.94□□□□□ -0.66
PTPRF-202ENST00000372405 AVPP01185 164 aa10.94□□□□□ -0.66
PTPRF-202ENST00000372405 IGHV3-48P01763 117 aa10.94□□□□□ -0.66
PTPRF-202ENST00000372405 HBE1P02100 147 aa10.94□□□□□ -0.66
PTPRF-202ENST00000372405 MBP02144 154 aa10.94□□□□□ -0.66
PTPRF-202ENST00000372405 APOC3P02656 99 aa10.94□□□□□ -0.66
PTPRF-202ENST00000372405 TMEM11P17152 192 aa10.94□□□□□ -0.66
PTPRF-202ENST00000372405 SUB1P53999 127 aaKnown RBP eCLIP10.94□□□□□ -0.66
PTPRF-202ENST00000372405 CACNG8Q8WXS5 425 aa10.94□□□□□ -0.66
PTPRF-202ENST00000372405 MAP1LC3BQ9GZQ8 125 aa10.94□□□□□ -0.66
PTPRF-202ENST00000372405 EIF5A2Q9GZV4 153 aaKnown RBP10.94□□□□□ -0.66
PTPRF-202ENST00000372405 BEX4Q9NWD9 120 aaPredicted RBP10.94□□□□□ -0.66
PTPRF-202ENST00000372405 HIF1ANQ9NWT6 349 aa10.94□□□□□ -0.66
PTPRF-202ENST00000372405 RBFOX3A6NFN3 312 aa10.94□□□□□ -0.66
PTPRF-202ENST00000372405 SFTA3P0C7M3 94 aa10.94□□□□□ -0.66
PTPRF-202ENST00000372405 LINC00869P0C866 280 aa10.94□□□□□ -0.66
PTPRF-202ENST00000372405 PRR20EP86478 221 aa10.94□□□□□ -0.66
PTPRF-202ENST00000372405 PRR20CP86479 221 aa10.94□□□□□ -0.66
PTPRF-202ENST00000372405 PRR20DP86480 221 aa10.94□□□□□ -0.66
PTPRF-202ENST00000372405 PRR20BP86481 221 aa10.94□□□□□ -0.66
PTPRF-202ENST00000372405 PRR20AP86496 221 aa10.94□□□□□ -0.66
PTPRF-202ENST00000372405 NDPQ00604 133 aa10.94□□□□□ -0.66
PTPRF-202ENST00000372405 FAM122CQ6P4D5 195 aa10.94□□□□□ -0.66
PTPRF-202ENST00000372405 ATRAIDQ6UW56 229 aa10.94□□□□□ -0.66
PTPRF-202ENST00000372405 STPG3Q8N7X2 389 aa10.94□□□□□ -0.66
PTPRF-202ENST00000372405 MAPK1IP1LQ8NDC0 245 aa10.94□□□□□ -0.66
PTPRF-202ENST00000372405 RAB24Q969Q5 203 aa10.94□□□□□ -0.66
PTPRF-202ENST00000372405 FAM103A1Q9BTL3 118 aaKnown RBP10.94□□□□□ -0.66
PTPRF-202ENST00000372405 C7orf69Q9H7B7 122 aa10.94□□□□□ -0.66
PTPRF-202ENST00000372405 SLC45A2Q9UMX9 530 aa10.94□□□□□ -0.66
PTPRF-202ENST00000372405 F11RQ9Y624 299 aaKnown RBP10.94□□□□□ -0.66
PTPRF-202ENST00000372405 SOX21Q9Y651 276 aaPredicted RBP10.94□□□□□ -0.66
PTPRF-202ENST00000372405 CTXND1A0A1B0GTU2 59 aa10.93□□□□□ -0.66
PTPRF-202ENST00000372405 NCBP2LA6PVI3 153 aaKnown RBP10.93□□□□□ -0.66
PTPRF-202ENST00000372405 SEC14L6B5MCN3 397 aa10.93□□□□□ -0.66
PTPRF-202ENST00000372405 CNIH1O95406 144 aa10.93□□□□□ -0.66
PTPRF-202ENST00000372405 FAM106CPP0CH98 169 aa10.93□□□□□ -0.66
PTPRF-202ENST00000372405 RPL29P47914 159 aaKnown RBP10.93□□□□□ -0.66
PTPRF-202ENST00000372405 B2MP61769 119 aa10.93□□□□□ -0.66
PTPRF-202ENST00000372405 FXYD3Q14802 87 aa10.93□□□□□ -0.66
PTPRF-202ENST00000372405 HAGHQ16775 308 aa10.93□□□□□ -0.66
PTPRF-202ENST00000372405 ACOT6Q3I5F7 207 aaPredicted RBP10.93□□□□□ -0.66
PTPRF-202ENST00000372405 Q8N9W7 124 aa10.93□□□□□ -0.66
PTPRF-202ENST00000372405 OR1P1Q8NH06 330 aa10.93□□□□□ -0.66
PTPRF-202ENST00000372405 SLC39A9Q9NUM3 307 aa10.93□□□□□ -0.66
PTPRF-202ENST00000372405 F8W036 122 aa10.92□□□□□ -0.66
PTPRF-202ENST00000372405 CRYGCP07315 174 aa10.92□□□□□ -0.66
PTPRF-202ENST00000372405 PPT1P50897 306 aa10.92□□□□□ -0.66
PTPRF-202ENST00000372405 CX3CL1P78423 397 aa10.92□□□□□ -0.66
PTPRF-202ENST00000372405 ICAM4Q14773 271 aa10.92□□□□□ -0.66
PTPRF-202ENST00000372405 PEA15Q15121 130 aa10.92□□□□□ -0.66
PTPRF-202ENST00000372405 GUCA2BQ16661 112 aa10.92□□□□□ -0.66
PTPRF-202ENST00000372405 KLF17Q5JT82 389 aaPredicted RBP10.92□□□□□ -0.66
PTPRF-202ENST00000372405 ZNF562Q6V9R5 426 aa10.92□□□□□ -0.66
PTPRF-202ENST00000372405 MRPL41Q8IXM3 137 aaKnown RBP10.92□□□□□ -0.66
PTPRF-202ENST00000372405 ACY3Q96HD9 319 aa10.92□□□□□ -0.66
PTPRF-202ENST00000372405 PBDC1Q9BVG4 233 aa10.92□□□□□ -0.66
PTPRF-202ENST00000372405 ACTR3CQ9C0K3 210 aaPredicted RBP10.92□□□□□ -0.66
PTPRF-202ENST00000372405 CARHSP1Q9Y2V2 147 aaKnown RBP10.92□□□□□ -0.66
PTPRF-202ENST00000372405 ZNF469Q96JG9 3925 aaPredicted RBP10.92□□□□□ -0.66
PTPRF-202ENST00000372405 IGKV1D-37A0A075B6S9 117 aa10.92□□□□□ -0.66
PTPRF-202ENST00000372405 A0A0U1RQK1 487 aa10.92□□□□□ -0.66
PTPRF-202ENST00000372405 SOX15O60248 233 aa10.92□□□□□ -0.66
PTPRF-202ENST00000372405 CTRB1P17538 263 aa10.92□□□□□ -0.66
PTPRF-202ENST00000372405 GATA2P23769 480 aaPredicted RBP10.92□□□□□ -0.66
PTPRF-202ENST00000372405 OR10J1P30954 320 aa10.92□□□□□ -0.66
PTPRF-202ENST00000372405 BRS3P32247 399 aa10.92□□□□□ -0.66
PTPRF-202ENST00000372405 ASPHD1Q5U4P2 390 aa10.92□□□□□ -0.66
PTPRF-202ENST00000372405 CTRB2Q6GPI1 263 aa10.92□□□□□ -0.66
PTPRF-202ENST00000372405 KRTAP1-3Q8IUG1 177 aa10.92□□□□□ -0.66
PTPRF-202ENST00000372405 LRRC75A-AS1Q8N1F1 130 aa10.92□□□□□ -0.66
PTPRF-202ENST00000372405 SUN5Q8TC36 379 aa10.92□□□□□ -0.66
PTPRF-202ENST00000372405 PIFOQ8TCI5 191 aa10.92□□□□□ -0.66
PTPRF-202ENST00000372405 MISP3Q96FF7 219 aa10.92□□□□□ -0.66
PTPRF-202ENST00000372405 SRSF8Q9BRL6 282 aaKnown RBP10.92□□□□□ -0.66
PTPRF-202ENST00000372405 SEC11CQ9BY50 192 aa10.92□□□□□ -0.66
PTPRF-202ENST00000372405 TMPRSS5Q9H3S3 457 aa10.92□□□□□ -0.66
PTPRF-202ENST00000372405 GNG13Q9P2W3 67 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms