RNA–Protein interactions for RNA: ENST00000367257.8

SYNE1-209, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 5,022 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-209ENST00000367257 TRANK1O15050 2925 aa7.54□□□□□ -1.2
SYNE1-209ENST00000367257 ASCC3Q8N3C0 2202 aaKnown RBP7.54□□□□□ -1.2
SYNE1-209ENST00000367257 CENPVL1A0A0U1RR11 272 aa7.54□□□□□ -1.2
SYNE1-209ENST00000367257 A8MWV9 139 aa7.54□□□□□ -1.2
SYNE1-209ENST00000367257 RFLNBQ8N5W9 214 aa7.54□□□□□ -1.2
SYNE1-209ENST00000367257 ZNF479Q96JC4 524 aa7.54□□□□□ -1.2
SYNE1-209ENST00000367257 AMELYQ99218 206 aa7.54□□□□□ -1.2
SYNE1-209ENST00000367257 SSTR5P35346 364 aa7.54□□□□□ -1.2
SYNE1-209ENST00000367257 LEPP41159 167 aa7.54□□□□□ -1.2
SYNE1-209ENST00000367257 PCOLCEQ15113 449 aa7.54□□□□□ -1.2
SYNE1-209ENST00000367257 ORMDL2Q53FV1 153 aa7.54□□□□□ -1.2
SYNE1-209ENST00000367257 ACP7Q6ZNF0 438 aa7.54□□□□□ -1.2
SYNE1-209ENST00000367257 FAM19A2Q8N3H0 131 aa7.54□□□□□ -1.2
SYNE1-209ENST00000367257 TEX45Q8NA69 505 aa7.54□□□□□ -1.2
SYNE1-209ENST00000367257 RPRMQ9NS64 109 aa7.54□□□□□ -1.2
SYNE1-209ENST00000367257 LINC00312Q9Y6C7 94 aa7.54□□□□□ -1.2
SYNE1-209ENST00000367257 IGLV3-32A0A0A0MS00 114 aa7.53□□□□□ -1.2
SYNE1-209ENST00000367257 IQCF6A8MYZ5 107 aa7.53□□□□□ -1.2
SYNE1-209ENST00000367257 ADAMTSL5Q6ZMM2 481 aa7.53□□□□□ -1.2
SYNE1-209ENST00000367257 OR9G4Q8NGQ1 327 aa7.53□□□□□ -1.2
SYNE1-209ENST00000367257 MESP1Q9BRJ9 268 aa7.53□□□□□ -1.2
SYNE1-209ENST00000367257 OVOL2Q9BRP0 275 aa7.53□□□□□ -1.2
SYNE1-209ENST00000367257 NHP2Q9NX24 153 aaKnown RBP7.53□□□□□ -1.2
SYNE1-209ENST00000367257 ANK1P16157 1881 aa7.53□□□□□ -1.2
SYNE1-209ENST00000367257 A0A0G2JK05 382 aa7.53□□□□□ -1.2
SYNE1-209ENST00000367257 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.53□□□□□ -1.2
SYNE1-209ENST00000367257 K7EP13 123 aa7.53□□□□□ -1.2
SYNE1-209ENST00000367257 POU2AF1Q16633 256 aa7.53□□□□□ -1.2
SYNE1-209ENST00000367257 LINC00305Q7Z4B0 112 aa7.53□□□□□ -1.2
SYNE1-209ENST00000367257 C18orf12Q96KH6 178 aa7.53□□□□□ -1.2
SYNE1-209ENST00000367257 GAGE12HA6NDE8 117 aa7.53□□□□□ -1.2
SYNE1-209ENST00000367257 YPEL1O60688 119 aa7.53□□□□□ -1.2
SYNE1-209ENST00000367257 DUSP14O95147 198 aaKnown RBP7.53□□□□□ -1.2
SYNE1-209ENST00000367257 RHOGP84095 191 aa7.53□□□□□ -1.2
SYNE1-209ENST00000367257 YPEL2Q96QA6 119 aa7.53□□□□□ -1.2
SYNE1-209ENST00000367257 NUP205Q92621 2012 aa7.53□□□□□ -1.2
SYNE1-209ENST00000367257 RTTNQ86VV8 2226 aa7.53□□□□□ -1.2
SYNE1-209ENST00000367257 MYOD1P15172 320 aa7.53□□□□□ -1.2
SYNE1-209ENST00000367257 FXYD3Q14802 87 aa7.53□□□□□ -1.2
SYNE1-209ENST00000367257 ZNF525Q8N782 197 aa7.53□□□□□ -1.2
SYNE1-209ENST00000367257 NUP37Q8NFH4 326 aa7.53□□□□□ -1.2
SYNE1-209ENST00000367257 PLPPR1Q8TBJ4 325 aa7.53□□□□□ -1.2
SYNE1-209ENST00000367257 TNFRSF18Q9Y5U5 241 aa7.53□□□□□ -1.2
SYNE1-209ENST00000367257 CHD9Q3L8U1 2897 aa7.53□□□□□ -1.2
SYNE1-209ENST00000367257 F2Z2F3 143 aa7.52□□□□□ -1.21
SYNE1-209ENST00000367257 RRHO14718 337 aa7.52□□□□□ -1.21
SYNE1-209ENST00000367257 IGLV3-19P01714 112 aa7.52□□□□□ -1.21
SYNE1-209ENST00000367257 PRSS2P07478 247 aa7.52□□□□□ -1.21
SYNE1-209ENST00000367257 COX6B1P14854 86 aa7.52□□□□□ -1.21
SYNE1-209ENST00000367257 APOBEC3AP31941 199 aaPredicted RBP7.52□□□□□ -1.21
SYNE1-209ENST00000367257 ICAM4Q14773 271 aa7.52□□□□□ -1.21
SYNE1-209ENST00000367257 GOLT1AQ6ZVE7 132 aa7.52□□□□□ -1.21
SYNE1-209ENST00000367257 SPANXCQ9NY87 97 aa7.52□□□□□ -1.21
SYNE1-209ENST00000367257 DPM3Q9P2X0 92 aa7.52□□□□□ -1.21
SYNE1-209ENST00000367257 TRBV6-7A0A0A0MS04 114 aa7.52□□□□□ -1.21
SYNE1-209ENST00000367257 C9orf153Q5TBE3 101 aa7.52□□□□□ -1.21
SYNE1-209ENST00000367257 NPIPB3Q92617 1050 aa7.52□□□□□ -1.21
SYNE1-209ENST00000367257 SPXQ9BT56 116 aa7.52□□□□□ -1.21
SYNE1-209ENST00000367257 HS3ST3B1Q9Y662 390 aa7.52□□□□□ -1.21
SYNE1-209ENST00000367257 ALPK3Q96L96 1907 aa7.52□□□□□ -1.21
SYNE1-209ENST00000367257 GAGE12JA6NER3 117 aa7.52□□□□□ -1.21
SYNE1-209ENST00000367257 GAGE7O76087 117 aa7.52□□□□□ -1.21
SYNE1-209ENST00000367257 GAGE12FP0CL80 117 aa7.52□□□□□ -1.21
SYNE1-209ENST00000367257 GAGE12GP0CL81 117 aa7.52□□□□□ -1.21
SYNE1-209ENST00000367257 GAGE12IP0CL82 117 aa7.52□□□□□ -1.21
SYNE1-209ENST00000367257 GAGE4Q13068 117 aa7.52□□□□□ -1.21
SYNE1-209ENST00000367257 ZNF56Q15929 161 aa7.52□□□□□ -1.21
SYNE1-209ENST00000367257 SAP25Q8TEE9 199 aa7.52□□□□□ -1.21
SYNE1-209ENST00000367257 IGKV3D-11A0A0A0MRZ8 115 aa7.52□□□□□ -1.21
SYNE1-209ENST00000367257 CEACAM4O75871 244 aa7.52□□□□□ -1.21
SYNE1-209ENST00000367257 TMEM50AO95807 157 aa7.52□□□□□ -1.21
SYNE1-209ENST00000367257 IGHV3-13P01766 116 aa7.52□□□□□ -1.21
SYNE1-209ENST00000367257 IGHV3-7P01780 117 aa7.52□□□□□ -1.21
SYNE1-209ENST00000367257 RPL23P62829 140 aaKnown RBP7.52□□□□□ -1.21
SYNE1-209ENST00000367257 SCGB3A1Q96QR1 104 aa7.52□□□□□ -1.21
SYNE1-209ENST00000367257 TRIOBPQ9H2D6 2365 aa7.51□□□□□ -1.21
SYNE1-209ENST00000367257 COL4A4P53420 1690 aaPredicted RBP7.51□□□□□ -1.21
SYNE1-209ENST00000367257 FAM89BQ8N5H3 189 aa7.51□□□□□ -1.21
SYNE1-209ENST00000367257 RNF5Q99942 180 aa7.51□□□□□ -1.21
SYNE1-209ENST00000367257 B5MCH6 92 aa7.51□□□□□ -1.21
SYNE1-209ENST00000367257 TMEM95Q3KNT9 176 aa7.51□□□□□ -1.21
SYNE1-209ENST00000367257 DUX5Q96PT3 197 aa7.51□□□□□ -1.21
SYNE1-209ENST00000367257 SZT2Q5T011 3432 aa7.51□□□□□ -1.21
SYNE1-209ENST00000367257 MUC21A0A0G2JKD1 596 aa7.51□□□□□ -1.21
SYNE1-209ENST00000367257 MUC21A0A140T8X8 626 aa7.51□□□□□ -1.21
SYNE1-209ENST00000367257 NTN1O95631 604 aa7.51□□□□□ -1.21
SYNE1-209ENST00000367257 MST1P26927 711 aa7.51□□□□□ -1.21
SYNE1-209ENST00000367257 REG1BP48304 166 aa7.51□□□□□ -1.21
SYNE1-209ENST00000367257 CCL8P80075 99 aa7.51□□□□□ -1.21
SYNE1-209ENST00000367257 SRSF6Q13247 344 aaKnown RBP7.51□□□□□ -1.21
SYNE1-209ENST00000367257 MUC21Q5SSG8 566 aa7.51□□□□□ -1.21
SYNE1-209ENST00000367257 HCP5Q6MZN7 132 aa7.51□□□□□ -1.21
SYNE1-209ENST00000367257 DTX1Q86Y01 620 aa7.51□□□□□ -1.21
SYNE1-209ENST00000367257 RTBDNQ9BSG5 229 aaPredicted RBP7.51□□□□□ -1.21
SYNE1-209ENST00000367257 REPIN1Q9BWE0 567 aaKnown RBP7.51□□□□□ -1.21
SYNE1-209ENST00000367257 TTC3P53804 2025 aa7.51□□□□□ -1.21
SYNE1-209ENST00000367257 HBDP02042 147 aa7.51□□□□□ -1.21
SYNE1-209ENST00000367257 APOHP02749 345 aaPredicted RBP7.51□□□□□ -1.21
SYNE1-209ENST00000367257 PEMTQ9UBM1 199 aa7.51□□□□□ -1.21
SYNE1-209ENST00000367257 C9JCJ5 164 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms