RNA–Protein interactions for RNA: ENST00000337526.10

RTN4-202, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,790 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-202ENST00000337526 ABCA4P78363 2273 aa11.5□□□□□ -0.57
RTN4-202ENST00000337526 FANCMQ8IYD8 2048 aa11.5□□□□□ -0.57
RTN4-202ENST00000337526 IGKV1-27A0A075B6S5 117 aa11.5□□□□□ -0.57
RTN4-202ENST00000337526 H7C2G1 150 aa11.5□□□□□ -0.57
RTN4-202ENST00000337526 SFTPCP11686 197 aa11.5□□□□□ -0.57
RTN4-202ENST00000337526 RNF144BQ7Z419 303 aa11.5□□□□□ -0.57
RTN4-202ENST00000337526 ERASQ7Z444 233 aa11.5□□□□□ -0.57
RTN4-202ENST00000337526 ZNF414Q96IQ9 312 aa11.5□□□□□ -0.57
RTN4-202ENST00000337526 VSIRQ9H7M9 311 aa11.5□□□□□ -0.57
RTN4-202ENST00000337526 SAA2-SAA4A0A096LPE2 208 aa11.5□□□□□ -0.57
RTN4-202ENST00000337526 TFF1P04155 84 aa11.5□□□□□ -0.57
RTN4-202ENST00000337526 SAA2P0DJI9 122 aaPredicted RBP11.5□□□□□ -0.57
RTN4-202ENST00000337526 CCL3L1P16619 93 aa11.5□□□□□ -0.57
RTN4-202ENST00000337526 ZFP36L1Q07352 338 aaKnown RBP11.5□□□□□ -0.57
RTN4-202ENST00000337526 FAM53AQ6NSI3 398 aaPredicted RBP11.5□□□□□ -0.57
RTN4-202ENST00000337526 C17orf82Q86X59 251 aaPredicted RBP11.5□□□□□ -0.57
RTN4-202ENST00000337526 HIGD1CA8MV81 97 aa11.49□□□□□ -0.57
RTN4-202ENST00000337526 C9orf172C9J069 976 aa11.49□□□□□ -0.57
RTN4-202ENST00000337526 CRXO43186 299 aaPredicted RBP11.49□□□□□ -0.57
RTN4-202ENST00000337526 SAA1P0DJI8 122 aaPredicted RBP11.49□□□□□ -0.57
RTN4-202ENST00000337526 FOXA2Q9Y261 457 aaPredicted RBP11.49□□□□□ -0.57
RTN4-202ENST00000337526 UPK2O00526 184 aa11.49□□□□□ -0.57
RTN4-202ENST00000337526 OCC1Q8TAD7 63 aa11.49□□□□□ -0.57
RTN4-202ENST00000337526 C18orf15Q96N68 181 aa11.49□□□□□ -0.57
RTN4-202ENST00000337526 NDUFAF3Q9BU61 184 aa11.49□□□□□ -0.57
RTN4-202ENST00000337526 NRN1Q9NPD7 142 aa11.49□□□□□ -0.57
RTN4-202ENST00000337526 IGKV3D-15A0A087WSY6 115 aa11.49□□□□□ -0.57
RTN4-202ENST00000337526 C5orf63A6NC05 138 aa11.49□□□□□ -0.57
RTN4-202ENST00000337526 NPIPB6E9PJ23 425 aa11.49□□□□□ -0.57
RTN4-202ENST00000337526 IGKV3-15P01624 115 aa11.49□□□□□ -0.57
RTN4-202ENST00000337526 DUTP33316 252 aaKnown RBP11.49□□□□□ -0.57
RTN4-202ENST00000337526 GCSAMLQ5JQS6 135 aa11.49□□□□□ -0.57
RTN4-202ENST00000337526 ZNF407Q9C0G0 2248 aa11.48□□□□□ -0.57
RTN4-202ENST00000337526 TRBV24-1A0A075B6N3 115 aa11.48□□□□□ -0.57
RTN4-202ENST00000337526 PINLYPA6NC86 204 aa11.48□□□□□ -0.57
RTN4-202ENST00000337526 C15orf61A6NNL5 157 aa11.48□□□□□ -0.57
RTN4-202ENST00000337526 APOHP02749 345 aaPredicted RBP11.48□□□□□ -0.57
RTN4-202ENST00000337526 COX6CP09669 75 aa11.48□□□□□ -0.57
RTN4-202ENST00000337526 FAM106AQ4KMX7 169 aa11.48□□□□□ -0.57
RTN4-202ENST00000337526 SYT8Q8NBV8 401 aa11.48□□□□□ -0.57
RTN4-202ENST00000337526 PRELID3AQ96N28 172 aa11.48□□□□□ -0.57
RTN4-202ENST00000337526 RPP21Q9H633 154 aaKnown RBP11.48□□□□□ -0.57
RTN4-202ENST00000337526 A1L4Q6 167 aa11.48□□□□□ -0.57
RTN4-202ENST00000337526 ATP5G2Q06055 141 aa11.48□□□□□ -0.57
RTN4-202ENST00000337526 TEX45Q8NA69 505 aa11.48□□□□□ -0.57
RTN4-202ENST00000337526 MUC21A0A0G2JKD1 596 aa11.48□□□□□ -0.57
RTN4-202ENST00000337526 MUC21A0A140T8X8 626 aa11.48□□□□□ -0.57
RTN4-202ENST00000337526 C17orf100A8MU93 164 aa11.48□□□□□ -0.57
RTN4-202ENST00000337526 MUC21Q5SSG8 566 aa11.48□□□□□ -0.57
RTN4-202ENST00000337526 CYB5R2Q6BCY4 276 aa11.48□□□□□ -0.57
RTN4-202ENST00000337526 PMCHL2Q9BQD1 86 aa11.48□□□□□ -0.57
RTN4-202ENST00000337526 MIEN1Q9BRT3 115 aa11.48□□□□□ -0.57
RTN4-202ENST00000337526 IZUMO1RA6ND01 250 aa11.48□□□□□ -0.57
RTN4-202ENST00000337526 IGHV3-49A0A0A0MS15 119 aa11.47□□□□□ -0.57
RTN4-202ENST00000337526 PCP4P48539 62 aa11.47□□□□□ -0.57
RTN4-202ENST00000337526 BSPH1Q075Z2 132 aa11.47□□□□□ -0.57
RTN4-202ENST00000337526 ST6GALNAC6Q969X2 333 aa11.47□□□□□ -0.57
RTN4-202ENST00000337526 TTC28Q96AY4 2481 aa11.47□□□□□ -0.57
RTN4-202ENST00000337526 USF3Q68DE3 2245 aa11.47□□□□□ -0.57
RTN4-202ENST00000337526 SNAI2O43623 268 aa11.47□□□□□ -0.57
RTN4-202ENST00000337526 CLPSP04118 112 aa11.47□□□□□ -0.57
RTN4-202ENST00000337526 CXCL1P09341 107 aa11.47□□□□□ -0.57
RTN4-202ENST00000337526 JOSD1Q15040 202 aaPredicted RBP11.47□□□□□ -0.57
RTN4-202ENST00000337526 DMRTA1Q5VZB9 504 aa11.47□□□□□ -0.57
RTN4-202ENST00000337526 GGNQ86UU5 652 aa11.47□□□□□ -0.57
RTN4-202ENST00000337526 HIST1H2BLQ99880 126 aa11.47□□□□□ -0.57
RTN4-202ENST00000337526 C21orf62Q9NYP8 219 aa11.47□□□□□ -0.57
RTN4-202ENST00000337526 OR11H12B2RN74 326 aa11.47□□□□□ -0.57
RTN4-202ENST00000337526 EFNB3Q15768 340 aa11.47□□□□□ -0.57
RTN4-202ENST00000337526 RTN4RL2Q86UN3 420 aa11.47□□□□□ -0.57
RTN4-202ENST00000337526 OR11H1Q8NG94 326 aa11.47□□□□□ -0.57
RTN4-202ENST00000337526 OR11H2Q8NH07 326 aa11.47□□□□□ -0.57
RTN4-202ENST00000337526 TMEM242Q9NWH2 141 aa11.47□□□□□ -0.57
RTN4-202ENST00000337526 SOX21Q9Y651 276 aaPredicted RBP11.47□□□□□ -0.57
RTN4-202ENST00000337526 SCN5AQ14524 2016 aa11.47□□□□□ -0.57
RTN4-202ENST00000337526 TRAV8-6A0A0B4J262 113 aa11.47□□□□□ -0.57
RTN4-202ENST00000337526 DLX6P56179 175 aa11.47□□□□□ -0.57
RTN4-202ENST00000337526 LY6EQ16553 131 aa11.47□□□□□ -0.57
RTN4-202ENST00000337526 DDB2Q92466 427 aa11.47□□□□□ -0.57
RTN4-202ENST00000337526 EEF1AKMT3Q96AZ1 226 aa11.47□□□□□ -0.57
RTN4-202ENST00000337526 PNRC2Q9NPJ4 139 aaKnown RBP11.47□□□□□ -0.57
RTN4-202ENST00000337526 A0A1W2PRE2 83 aa11.46□□□□□ -0.57
RTN4-202ENST00000337526 OR9G9P0C7N8 305 aa11.46□□□□□ -0.57
RTN4-202ENST00000337526 QRFPP83859 136 aa11.46□□□□□ -0.57
RTN4-202ENST00000337526 NMSQ5H8A3 153 aa11.46□□□□□ -0.57
RTN4-202ENST00000337526 RPP25LQ8N5L8 163 aaKnown RBP11.46□□□□□ -0.57
RTN4-202ENST00000337526 ARL6IP6Q8N6S5 226 aa11.46□□□□□ -0.57
RTN4-202ENST00000337526 TMEM160Q9NX00 188 aa11.46□□□□□ -0.57
RTN4-202ENST00000337526 PEF1Q9UBV8 284 aaKnown RBP11.46□□□□□ -0.57
RTN4-202ENST00000337526 ADMP35318 185 aa11.46□□□□□ -0.57
RTN4-202ENST00000337526 TMPRSS3P57727 454 aa11.46□□□□□ -0.57
RTN4-202ENST00000337526 OSTCQ9NRP0 149 aa11.46□□□□□ -0.57
RTN4-202ENST00000337526 TRAV1-1A0A0B4J248 108 aa11.46□□□□□ -0.58
RTN4-202ENST00000337526 IGKV1D-33P01593 117 aa11.46□□□□□ -0.58
RTN4-202ENST00000337526 IGKV1-33P01594 117 aa11.46□□□□□ -0.58
RTN4-202ENST00000337526 SRSF7Q16629 238 aaKnown RBP eCLIP11.46□□□□□ -0.58
RTN4-202ENST00000337526 FAM74A4Q5TZK3 123 aa11.46□□□□□ -0.58
RTN4-202ENST00000337526 TEX38Q6PEX7 206 aa11.46□□□□□ -0.58
RTN4-202ENST00000337526 FMC1Q96HJ9 113 aa11.46□□□□□ -0.58
RTN4-202ENST00000337526 KIR2DL4Q99706 377 aa11.46□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms