RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 SOSTQ9BQB4 213 aa12.26□□□□□ -0.45
LSM1-201ENST00000311351 NAA60Q9H7X0 242 aa12.26□□□□□ -0.45
LSM1-201ENST00000311351 ZMAT4Q9H898 229 aa12.26□□□□□ -0.45
LSM1-201ENST00000311351 PALMDQ9NP74 551 aa12.26□□□□□ -0.45
LSM1-201ENST00000311351 UFC1Q9Y3C8 167 aa12.26□□□□□ -0.45
LSM1-201ENST00000311351 TEX13DA0A0J9YY54 714 aaPredicted RBP12.25□□□□□ -0.45
LSM1-201ENST00000311351 ATG12O94817 140 aa12.25□□□□□ -0.45
LSM1-201ENST00000311351 MT-CO2P00403 227 aa12.25□□□□□ -0.45
LSM1-201ENST00000311351 C8orf88P0DMB2 117 aa12.25□□□□□ -0.45
LSM1-201ENST00000311351 SURF2Q15527 256 aaPredicted RBP12.25□□□□□ -0.45
LSM1-201ENST00000311351 HAGHQ16775 308 aa12.25□□□□□ -0.45
LSM1-201ENST00000311351 SPSB3Q6PJ21 355 aa12.25□□□□□ -0.45
LSM1-201ENST00000311351 ZNF414Q96IQ9 312 aa12.25□□□□□ -0.45
LSM1-201ENST00000311351 PRRT1Q99946 306 aa12.25□□□□□ -0.45
LSM1-201ENST00000311351 TMEM222Q9H0R3 208 aa12.25□□□□□ -0.45
LSM1-201ENST00000311351 GPR132Q9UNW8 380 aa12.25□□□□□ -0.45
LSM1-201ENST00000311351 CRYM-AS1A6NIL9 109 aa12.24□□□□□ -0.45
LSM1-201ENST00000311351 ZNF207O43670 478 aaKnown RBP12.24□□□□□ -0.45
LSM1-201ENST00000311351 IFNA17P01571 189 aa12.24□□□□□ -0.45
LSM1-201ENST00000311351 HOXA1P49639 335 aaPredicted RBP12.24□□□□□ -0.45
LSM1-201ENST00000311351 ELLP55199 621 aaPredicted RBP12.24□□□□□ -0.45
LSM1-201ENST00000311351 ERHP84090 104 aaKnown RBP12.24□□□□□ -0.45
LSM1-201ENST00000311351 SPANXN2Q5MJ10 180 aa12.24□□□□□ -0.45
LSM1-201ENST00000311351 Q6ZRM9 215 aa12.24□□□□□ -0.45
LSM1-201ENST00000311351 GLYATL2Q8WU03 294 aa12.24□□□□□ -0.45
LSM1-201ENST00000311351 MARC2Q969Z3 335 aa12.24□□□□□ -0.45
LSM1-201ENST00000311351 RRNAD1Q96FB5 475 aaKnown RBP12.24□□□□□ -0.45
LSM1-201ENST00000311351 ATP6V0BQ99437 205 aa12.24□□□□□ -0.45
LSM1-201ENST00000311351 C20orf24Q9BUV8 137 aa12.24□□□□□ -0.45
LSM1-201ENST00000311351 SRD5A3Q9H8P0 318 aa12.24□□□□□ -0.45
LSM1-201ENST00000311351 MCUBQ9NWR8 336 aa12.24□□□□□ -0.45
LSM1-201ENST00000311351 PRR13Q9NZ81 148 aa12.24□□□□□ -0.45
LSM1-201ENST00000311351 MRPL27Q9P0M9 148 aaKnown RBP12.24□□□□□ -0.45
LSM1-201ENST00000311351 NDUFA4O00483 81 aa12.23□□□□□ -0.45
LSM1-201ENST00000311351 B3GALNT1O75752 331 aa12.23□□□□□ -0.45
LSM1-201ENST00000311351 CDS2O95674 445 aa12.23□□□□□ -0.45
LSM1-201ENST00000311351 CTSGP08311 255 aa12.23□□□□□ -0.45
LSM1-201ENST00000311351 ETV6P41212 452 aa12.23□□□□□ -0.45
LSM1-201ENST00000311351 MFAP4P55083 255 aa12.23□□□□□ -0.45
LSM1-201ENST00000311351 AP3S2P59780 193 aa12.23□□□□□ -0.45
LSM1-201ENST00000311351 SELENOHQ8IZQ5 122 aaKnown RBP12.23□□□□□ -0.45
LSM1-201ENST00000311351 RBPMSQ93062 196 aaKnown RBP12.23□□□□□ -0.45
LSM1-201ENST00000311351 TRIM63Q969Q1 353 aa12.23□□□□□ -0.45
LSM1-201ENST00000311351 TMEM230Q96A57 120 aa12.23□□□□□ -0.45
LSM1-201ENST00000311351 PDCD10Q9BUL8 212 aa12.23□□□□□ -0.45
LSM1-201ENST00000311351 RETNQ9HD89 108 aa12.23□□□□□ -0.45
LSM1-201ENST00000311351 DAZ1Q9NQZ3 744 aaKnown RBP12.23□□□□□ -0.45
LSM1-201ENST00000311351 V9GYH0 126 aa12.23□□□□□ -0.45
LSM1-201ENST00000311351 OR11H12B2RN74 326 aa12.22□□□□□ -0.45
LSM1-201ENST00000311351 FAUP35544 74 aaKnown RBP12.22□□□□□ -0.45
LSM1-201ENST00000311351 PYDC2Q56P42 97 aa12.22□□□□□ -0.45
LSM1-201ENST00000311351 TMEM268Q5VZI3 342 aa12.22□□□□□ -0.45
LSM1-201ENST00000311351 SLC16A13Q7RTY0 426 aa12.22□□□□□ -0.45
LSM1-201ENST00000311351 OR52B4Q8NGK2 314 aa12.22□□□□□ -0.45
LSM1-201ENST00000311351 SPATA25Q9BR10 227 aa12.22□□□□□ -0.45
LSM1-201ENST00000311351 SCP2D1Q9UJQ7 156 aa12.22□□□□□ -0.45
LSM1-201ENST00000311351 RBMY1BA6NDE4 496 aaKnown RBP12.21□□□□□ -0.45
LSM1-201ENST00000311351 RBMY1EA6NEQ0 496 aaKnown RBP12.21□□□□□ -0.45
LSM1-201ENST00000311351 INS-IGF2F8WCM5 200 aa12.21□□□□□ -0.45
LSM1-201ENST00000311351 NUPL2O15504 423 aaKnown RBP12.21□□□□□ -0.45
LSM1-201ENST00000311351 RBMY1DP0C7P1 496 aaKnown RBP12.21□□□□□ -0.45
LSM1-201ENST00000311351 RNASE2P10153 161 aaKnown RBP12.21□□□□□ -0.45
LSM1-201ENST00000311351 FCGR2BP31994 310 aaPredicted RBP12.21□□□□□ -0.45
LSM1-201ENST00000311351 SNCAP37840 140 aa12.21□□□□□ -0.45
LSM1-201ENST00000311351 DHODHQ02127 395 aa12.21□□□□□ -0.45
LSM1-201ENST00000311351 KLF9Q13886 244 aaPredicted RBP12.21□□□□□ -0.45
LSM1-201ENST00000311351 ZNF79Q15937 498 aa12.21□□□□□ -0.45
LSM1-201ENST00000311351 LINC00322Q6ZN03 302 aaPredicted RBP12.21□□□□□ -0.45
LSM1-201ENST00000311351 RBPMS2Q6ZRY4 209 aaKnown RBP12.21□□□□□ -0.45
LSM1-201ENST00000311351 DEDD2Q8WXF8 326 aa12.21□□□□□ -0.45
LSM1-201ENST00000311351 CACNG5Q9UF02 275 aa12.21□□□□□ -0.45
LSM1-201ENST00000311351 RYR3Q15413 4870 aa12.2□□□□□ -0.46
LSM1-201ENST00000311351 GNG7O60262 68 aa12.2□□□□□ -0.46
LSM1-201ENST00000311351 NXPH3O95157 252 aa12.2□□□□□ -0.46
LSM1-201ENST00000311351 RELQ04864 619 aaPredicted RBP12.2□□□□□ -0.46
LSM1-201ENST00000311351 CCDC190Q86UF4 302 aa12.2□□□□□ -0.46
LSM1-201ENST00000311351 FAM219AQ8IW50 185 aa12.2□□□□□ -0.46
LSM1-201ENST00000311351 GPR146Q96CH1 333 aa12.2□□□□□ -0.46
LSM1-201ENST00000311351 SCGB3A2Q96PL1 93 aa12.2□□□□□ -0.46
LSM1-201ENST00000311351 TXN2Q99757 166 aa12.2□□□□□ -0.46
LSM1-201ENST00000311351 ENY2Q9NPA8 101 aa12.2□□□□□ -0.46
LSM1-201ENST00000311351 GAR1Q9NY12 217 aaKnown RBP12.2□□□□□ -0.46
LSM1-201ENST00000311351 IGHV3-49A0A0A0MS15 119 aa12.19□□□□□ -0.46
LSM1-201ENST00000311351 TRAV25A0A0B4J276 109 aa12.19□□□□□ -0.46
LSM1-201ENST00000311351 YIF1AO95070 293 aa12.19□□□□□ -0.46
LSM1-201ENST00000311351 TMEM187Q14656 261 aa12.19□□□□□ -0.46
LSM1-201ENST00000311351 AARDQ4LEZ3 155 aa12.19□□□□□ -0.46
LSM1-201ENST00000311351 MUC7Q8TAX7 377 aa12.19□□□□□ -0.46
LSM1-201ENST00000311351 CITED4Q96RK1 184 aa12.19□□□□□ -0.46
LSM1-201ENST00000311351 FAM110AQ9BQ89 295 aa12.19□□□□□ -0.46
LSM1-201ENST00000311351 MRPL36Q9P0J6 103 aaKnown RBP12.19□□□□□ -0.46
LSM1-201ENST00000311351 C15orf62A8K5M9 175 aa12.18□□□□□ -0.46
LSM1-201ENST00000311351 K7EMT4 169 aa12.18□□□□□ -0.46
LSM1-201ENST00000311351 AKR1C4P17516 323 aa12.18□□□□□ -0.46
LSM1-201ENST00000311351 SPCS3P61009 180 aa12.18□□□□□ -0.46
LSM1-201ENST00000311351 SUPT4H1P63272 117 aaKnown RBP12.18□□□□□ -0.46
LSM1-201ENST00000311351 BSXQ3C1V8 233 aa12.18□□□□□ -0.46
LSM1-201ENST00000311351 PVRIGQ6DKI7 326 aa12.18□□□□□ -0.46
LSM1-201ENST00000311351 TOMM5Q8N4H5 51 aa12.18□□□□□ -0.46
LSM1-201ENST00000311351 GALNT14Q96FL9 552 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 175.2 ms