RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 TMEM229BQ8NBD8 167 aa14.53□□□□□ -0.08
LIME1-201ENST00000309546 OR13C8Q8NGS7 320 aa14.53□□□□□ -0.08
LIME1-201ENST00000309546 RNASE11Q8TAA1 199 aaKnown RBP14.53□□□□□ -0.08
LIME1-201ENST00000309546 ZFAND1Q8TCF1 268 aa14.53□□□□□ -0.08
LIME1-201ENST00000309546 PDCD10Q9BUL8 212 aa14.53□□□□□ -0.08
LIME1-201ENST00000309546 MIXL1Q9H2W2 232 aa14.53□□□□□ -0.08
LIME1-201ENST00000309546 IGHV7-4-1A0A0J9YVY3 117 aa14.52□□□□□ -0.09
LIME1-201ENST00000309546 ST8SIA3O43173 380 aa14.52□□□□□ -0.09
LIME1-201ENST00000309546 ATG12O94817 140 aa14.52□□□□□ -0.09
LIME1-201ENST00000309546 IFNA17P01571 189 aa14.52□□□□□ -0.09
LIME1-201ENST00000309546 CD74P04233 296 aa14.52□□□□□ -0.09
LIME1-201ENST00000309546 SNCAP37840 140 aa14.52□□□□□ -0.09
LIME1-201ENST00000309546 SPCS2Q15005 226 aa14.52□□□□□ -0.09
LIME1-201ENST00000309546 ODF3L2Q3SX64 289 aa14.52□□□□□ -0.09
LIME1-201ENST00000309546 FAAP20Q6NZ36 180 aa14.52□□□□□ -0.09
LIME1-201ENST00000309546 STEAP1BQ6NZ63 245 aa14.52□□□□□ -0.09
LIME1-201ENST00000309546 TERB2Q8NHR7 220 aa14.52□□□□□ -0.09
LIME1-201ENST00000309546 MARCH1Q8TCQ1 289 aa14.52□□□□□ -0.09
LIME1-201ENST00000309546 ZNF414Q96IQ9 312 aa14.52□□□□□ -0.09
LIME1-201ENST00000309546 RNF2Q99496 336 aa14.52□□□□□ -0.09
LIME1-201ENST00000309546 TXN2Q99757 166 aa14.52□□□□□ -0.09
LIME1-201ENST00000309546 OVOL2Q9BRP0 275 aa14.52□□□□□ -0.09
LIME1-201ENST00000309546 SMPXQ9UHP9 88 aa14.52□□□□□ -0.09
LIME1-201ENST00000309546 IGKV3-7A0A075B6H7 116 aa14.51□□□□□ -0.09
LIME1-201ENST00000309546 IGHV3OR16-13A0A075B7E8 117 aa14.51□□□□□ -0.09
LIME1-201ENST00000309546 IGHV3-74A0A0B4J1X5 117 aa14.51□□□□□ -0.09
LIME1-201ENST00000309546 GABARAPH6UMI1 98 aa14.51□□□□□ -0.09
LIME1-201ENST00000309546 CTDSP2O14595 271 aa14.51□□□□□ -0.09
LIME1-201ENST00000309546 FCGR2BP31994 310 aaPredicted RBP14.51□□□□□ -0.09
LIME1-201ENST00000309546 HOXA1P49639 335 aaPredicted RBP14.51□□□□□ -0.09
LIME1-201ENST00000309546 APOC4P55056 127 aa14.51□□□□□ -0.09
LIME1-201ENST00000309546 TMEM116Q8NCL8 245 aa14.51□□□□□ -0.09
LIME1-201ENST00000309546 RHPN1-AS1Q9BWJ2 59 aa14.51□□□□□ -0.09
LIME1-201ENST00000309546 NXF2Q9GZY0 626 aaKnown RBP14.51□□□□□ -0.09
LIME1-201ENST00000309546 A0A0B4J293 547 aa14.5□□□□□ -0.09
LIME1-201ENST00000309546 CHEK1O14757 476 aa14.5□□□□□ -0.09
LIME1-201ENST00000309546 P0C879 139 aa14.5□□□□□ -0.09
LIME1-201ENST00000309546 TFPI2P48307 235 aa14.5□□□□□ -0.09
LIME1-201ENST00000309546 ALDH3B2P48448 385 aa14.5□□□□□ -0.09
LIME1-201ENST00000309546 RRNAD1Q96FB5 475 aaKnown RBP14.5□□□□□ -0.09
LIME1-201ENST00000309546 ENY2Q9NPA8 101 aa14.5□□□□□ -0.09
LIME1-201ENST00000309546 RPL35AP18077 110 aaKnown RBP14.49□□□□□ -0.09
LIME1-201ENST00000309546 UCP1P25874 307 aa14.49□□□□□ -0.09
LIME1-201ENST00000309546 ETV6P41212 452 aa14.49□□□□□ -0.09
LIME1-201ENST00000309546 DEFB135Q30KP9 77 aa14.49□□□□□ -0.09
LIME1-201ENST00000309546 CLVS1Q8IUQ0 354 aaPredicted RBP14.49□□□□□ -0.09
LIME1-201ENST00000309546 DUSP18Q8NEJ0 188 aa14.49□□□□□ -0.09
LIME1-201ENST00000309546 OR10C1Q96KK4 312 aa14.49□□□□□ -0.09
LIME1-201ENST00000309546 C14orf166Q9Y224 244 aaKnown RBP14.49□□□□□ -0.09
LIME1-201ENST00000309546 TRAV14DV4A0A0A6YYC5 116 aa14.48□□□□□ -0.09
LIME1-201ENST00000309546 A0A0G2JRQ6 117 aa14.48□□□□□ -0.09
LIME1-201ENST00000309546 JTBO76095 146 aa14.48□□□□□ -0.09
LIME1-201ENST00000309546 NPBWR1P48145 328 aa14.48□□□□□ -0.09
LIME1-201ENST00000309546 MRPS10P82664 201 aaKnown RBP14.48□□□□□ -0.09
LIME1-201ENST00000309546 SSBP1Q04837 148 aaKnown RBP14.48□□□□□ -0.09
LIME1-201ENST00000309546 IL18Q14116 193 aa14.48□□□□□ -0.09
LIME1-201ENST00000309546 MEF2DQ14814 521 aa14.48□□□□□ -0.09
LIME1-201ENST00000309546 GINS3Q9BRX5 216 aa14.48□□□□□ -0.09
LIME1-201ENST00000309546 TEX13DA0A0J9YY54 714 aaPredicted RBP14.47□□□□□ -0.09
LIME1-201ENST00000309546 DISC1C4P0D8 188 aa14.47□□□□□ -0.09
LIME1-201ENST00000309546 OR5AC1P0C628 307 aa14.47□□□□□ -0.09
LIME1-201ENST00000309546 RNASE2P10153 161 aaKnown RBP14.47□□□□□ -0.09
LIME1-201ENST00000309546 SUB1P53999 127 aaKnown RBP eCLIP14.47□□□□□ -0.09
LIME1-201ENST00000309546 TOMM20LQ6UXN7 152 aa14.47□□□□□ -0.09
LIME1-201ENST00000309546 APRG1Q8IVJ8 170 aa14.47□□□□□ -0.09
LIME1-201ENST00000309546 GBGT1Q8N5D6 347 aa14.47□□□□□ -0.09
LIME1-201ENST00000309546 STPG3Q8N7X2 389 aa14.47□□□□□ -0.09
LIME1-201ENST00000309546 SMIM4Q8WVI0 70 aa14.47□□□□□ -0.09
LIME1-201ENST00000309546 DIRAS2Q96HU8 199 aa14.47□□□□□ -0.09
LIME1-201ENST00000309546 INS-IGF2F8WCM5 200 aa14.46□□□□□ -0.09
LIME1-201ENST00000309546 CORTO00230 105 aa14.46□□□□□ -0.09
LIME1-201ENST00000309546 SPRY2O43597 315 aa14.46□□□□□ -0.09
LIME1-201ENST00000309546 B3GALNT1O75752 331 aa14.46□□□□□ -0.09
LIME1-201ENST00000309546 ZNF600Q6ZNG1 722 aa14.46□□□□□ -0.09
LIME1-201ENST00000309546 Q6ZWC4 215 aa14.46□□□□□ -0.09
LIME1-201ENST00000309546 OR4C16Q8NGL9 310 aa14.46□□□□□ -0.09
LIME1-201ENST00000309546 GALNT14Q96FL9 552 aa14.46□□□□□ -0.09
LIME1-201ENST00000309546 TMEM222Q9H0R3 208 aa14.46□□□□□ -0.09
LIME1-201ENST00000309546 HYDINQ4G0P3 5121 aa14.45□□□□□ -0.1
LIME1-201ENST00000309546 A0A0J9YWU9 116 aa14.45□□□□□ -0.1
LIME1-201ENST00000309546 AKAIN1P0CW23 69 aa14.45□□□□□ -0.1
LIME1-201ENST00000309546 BMI1P35226 326 aa14.45□□□□□ -0.1
LIME1-201ENST00000309546 OPRK1P41145 380 aa14.45□□□□□ -0.1
LIME1-201ENST00000309546 PMS2P11Q13670 270 aa14.45□□□□□ -0.1
LIME1-201ENST00000309546 ZNF124Q15973 351 aa14.45□□□□□ -0.1
LIME1-201ENST00000309546 TCF24Q7RTU0 167 aa14.45□□□□□ -0.1
LIME1-201ENST00000309546 RAB2BQ8WUD1 216 aa14.45□□□□□ -0.1
LIME1-201ENST00000309546 RTBDNQ9BSG5 229 aaPredicted RBP14.45□□□□□ -0.1
LIME1-201ENST00000309546 C6orf62Q9GZU0 229 aaPredicted RBP14.45□□□□□ -0.1
LIME1-201ENST00000309546 NAA60Q9H7X0 242 aa14.45□□□□□ -0.1
LIME1-201ENST00000309546 CCDC59Q9P031 241 aaKnown RBP14.45□□□□□ -0.1
LIME1-201ENST00000309546 TP53TG1Q9Y2A0 90 aa14.45□□□□□ -0.1
LIME1-201ENST00000309546 PUS1Q9Y606 427 aaKnown RBP eCLIP14.45□□□□□ -0.1
LIME1-201ENST00000309546 DNAH1Q9P2D7 4330 aa14.45□□□□□ -0.1
LIME1-201ENST00000309546 IGHV3-66A0A0C4DH42 116 aa14.44□□□□□ -0.1
LIME1-201ENST00000309546 KIR2DL5BA0A0G2JN68 375 aa14.44□□□□□ -0.1
LIME1-201ENST00000309546 KIR2DL5BA0A0G2JPC4 375 aa14.44□□□□□ -0.1
LIME1-201ENST00000309546 UBE2CO00762 179 aa14.44□□□□□ -0.1
LIME1-201ENST00000309546 Q6ZRM9 215 aa14.44□□□□□ -0.1
LIME1-201ENST00000309546 LYG2Q86SG7 212 aa14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms