RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 CDKN1BP46527 198 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 ZNF137PP52743 207 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 GGTLC1Q9BX51 225 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 KLHDC2Q9Y2U9 406 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 TTC28Q96AY4 2481 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 A0A1B0GUT8 65 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 F12P00748 615 aaPredicted RBP4.47□□□□□ -1.69
SCN1A-201ENST00000303395 SLC23A3Q6PIS1 610 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 BIVMQ86UB2 503 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 DUX3Q96PT4 197 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 LRRC61Q9BV99 259 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 TOMM40O96008 361 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 SAA1P0DJI8 122 aaPredicted RBP4.47□□□□□ -1.69
SCN1A-201ENST00000303395 CGB7P0DN87 165 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 ANOS1P23352 680 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 APOBEC3AP31941 199 aaPredicted RBP4.47□□□□□ -1.69
SCN1A-201ENST00000303395 CRYBA2P53672 197 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 MFAP2P55001 183 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 PVRIGQ6DKI7 326 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 TMEM14EPQ6UXP3 125 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 NPCDR1Q9BY65 106 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 RTN4RQ9BZR6 473 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 DSCAML1Q8TD84 2053 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 IGLV3-12A0A075B6K2 115 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 DEFB108AA8MXU0 73 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 INS-IGF2F8WCM5 200 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 TMEM50AO95807 157 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 INSP01308 110 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 INAFM2P0DMQ5 153 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 PAX1P15863 534 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 DRAM1Q8N682 238 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 TSKUQ8WUA8 353 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 TMEM158Q8WZ71 300 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 SLC50A1Q9BRV3 221 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 KLF12Q9Y4X4 402 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 TMSB15BA0A087X1C1 80 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 A0A1W2PRS3 328 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 TNFRSF6BO95407 300 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 HLA-DRB4P13762 266 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 C10orf111Q8N326 155 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 FZR1Q9UM11 496 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 HLA-DRB4X5D2U9 266 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 PAGE4O60829 102 aa4.46□□□□□ -1.69
SCN1A-201ENST00000303395 LHX2P50458 406 aa4.46□□□□□ -1.69
SCN1A-201ENST00000303395 FUT5Q11128 374 aa4.46□□□□□ -1.69
SCN1A-201ENST00000303395 ICAM4Q14773 271 aa4.46□□□□□ -1.69
SCN1A-201ENST00000303395 CEACAM16Q2WEN9 425 aa4.46□□□□□ -1.69
SCN1A-201ENST00000303395 TRPM7Q96QT4 1865 aa4.46□□□□□ -1.69
SCN1A-201ENST00000303395 RIF1Q5UIP0 2472 aaKnown RBP4.46□□□□□ -1.69
SCN1A-201ENST00000303395 NDUFS5O43920 106 aa4.46□□□□□ -1.7
SCN1A-201ENST00000303395 ZNF883P0CG24 379 aa4.46□□□□□ -1.7
SCN1A-201ENST00000303395 GZMBP10144 247 aa4.46□□□□□ -1.7
SCN1A-201ENST00000303395 C3orf36Q3SXR2 165 aa4.46□□□□□ -1.7
SCN1A-201ENST00000303395 TMEM196Q5HYL7 178 aa4.46□□□□□ -1.7
SCN1A-201ENST00000303395 ZNF414Q96IQ9 312 aa4.46□□□□□ -1.7
SCN1A-201ENST00000303395 EMC6Q9BV81 110 aa4.46□□□□□ -1.7
SCN1A-201ENST00000303395 NEUROG3Q9Y4Z2 214 aa4.46□□□□□ -1.7
SCN1A-201ENST00000303395 LCTP09848 1927 aa4.46□□□□□ -1.7
SCN1A-201ENST00000303395 LIFP15018 202 aa4.46□□□□□ -1.7
SCN1A-201ENST00000303395 GPR6P46095 362 aaPredicted RBP4.46□□□□□ -1.7
SCN1A-201ENST00000303395 MRPS11P82912 194 aaKnown RBP4.46□□□□□ -1.7
SCN1A-201ENST00000303395 FBLN7Q53RD9 439 aa4.46□□□□□ -1.7
SCN1A-201ENST00000303395 ANKRD34AQ69YU3 496 aa4.46□□□□□ -1.7
SCN1A-201ENST00000303395 OR4D11Q8NGI4 311 aa4.46□□□□□ -1.7
SCN1A-201ENST00000303395 ASCL2Q99929 193 aa4.46□□□□□ -1.7
SCN1A-201ENST00000303395 C1QTNF5Q9BXJ0 243 aa4.46□□□□□ -1.7
SCN1A-201ENST00000303395 SLC25A39Q9BZJ4 359 aaPredicted RBP4.46□□□□□ -1.7
SCN1A-201ENST00000303395 KCNE3Q9Y6H6 103 aa4.46□□□□□ -1.7
SCN1A-201ENST00000303395 F8W1H4 67 aa4.46□□□□□ -1.7
SCN1A-201ENST00000303395 PEX7O00628 323 aa4.46□□□□□ -1.7
SCN1A-201ENST00000303395 ACYP1P07311 99 aa4.46□□□□□ -1.7
SCN1A-201ENST00000303395 SMAD4Q13485 552 aaKnown RBP4.46□□□□□ -1.7
SCN1A-201ENST00000303395 FAAP20Q6NZ36 180 aa4.46□□□□□ -1.7
SCN1A-201ENST00000303395 SCGB3A1Q96QR1 104 aa4.46□□□□□ -1.7
SCN1A-201ENST00000303395 HCFC2Q9Y5Z7 792 aa4.46□□□□□ -1.7
SCN1A-201ENST00000303395 CGB1A6NKQ9 187 aa4.46□□□□□ -1.7
SCN1A-201ENST00000303395 GAGE2EQ4V326 116 aa4.46□□□□□ -1.7
SCN1A-201ENST00000303395 ZNF525Q8N782 197 aa4.46□□□□□ -1.7
SCN1A-201ENST00000303395 KLK15Q9H2R5 256 aa4.46□□□□□ -1.7
SCN1A-201ENST00000303395 GAGE2DQ9UEU5 116 aa4.46□□□□□ -1.7
SCN1A-201ENST00000303395 F11RQ9Y624 299 aaKnown RBP4.46□□□□□ -1.7
SCN1A-201ENST00000303395 K7ERS5 55 aa4.46□□□□□ -1.7
SCN1A-201ENST00000303395 SRSF1Q07955 248 aaKnown RBP eCLIP4.46□□□□□ -1.7
SCN1A-201ENST00000303395 TEX38Q6PEX7 206 aa4.46□□□□□ -1.7
SCN1A-201ENST00000303395 ORMDL3Q8N138 153 aa4.46□□□□□ -1.7
SCN1A-201ENST00000303395 ATP6V0E2Q8NHE4 81 aa4.46□□□□□ -1.7
SCN1A-201ENST00000303395 LOXL4Q96JB6 756 aa4.46□□□□□ -1.7
SCN1A-201ENST00000303395 TMEM126AQ9H061 195 aa4.46□□□□□ -1.7
SCN1A-201ENST00000303395 PRO1933Q9H354 126 aa4.46□□□□□ -1.7
SCN1A-201ENST00000303395 IGHV1-24A0A0C4DH33 117 aa4.46□□□□□ -1.7
SCN1A-201ENST00000303395 hCG_38984A0A1B0GV85 526 aa4.46□□□□□ -1.7
SCN1A-201ENST00000303395 PGLYRP1O75594 196 aaPredicted RBP4.46□□□□□ -1.7
SCN1A-201ENST00000303395 GCHFRP30047 84 aa4.46□□□□□ -1.7
SCN1A-201ENST00000303395 Q5BKY6 102 aa4.46□□□□□ -1.7
SCN1A-201ENST00000303395 TEX43Q6ZNM6 134 aa4.46□□□□□ -1.7
SCN1A-201ENST00000303395 LYZL2Q7Z4W2 148 aa4.46□□□□□ -1.7
SCN1A-201ENST00000303395 FAM57AQ8TBR7 257 aa4.46□□□□□ -1.7
SCN1A-201ENST00000303395 WFDC5Q8TCV5 224 aa4.46□□□□□ -1.7
SCN1A-201ENST00000303395 ITLN2Q8WWU7 325 aaPredicted RBP4.46□□□□□ -1.7
SCN1A-201ENST00000303395 HDHD3Q9BSH5 251 aaPredicted RBP4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms