RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 COX14Q96I36 57 aa11.82□□□□□ -0.52
CCDC88A-201ENST00000263630 WDR81Q562E7 1941 aa11.82□□□□□ -0.52
CCDC88A-201ENST00000263630 SCO2A0A1W2PP80 73 aa11.82□□□□□ -0.52
CCDC88A-201ENST00000263630 TCTEX1D4Q5JR98 221 aa11.82□□□□□ -0.52
CCDC88A-201ENST00000263630 Q6ZS52 159 aa11.82□□□□□ -0.52
CCDC88A-201ENST00000263630 PEX11BO96011 259 aa11.82□□□□□ -0.52
CCDC88A-201ENST00000263630 SP9P0CG40 484 aa11.82□□□□□ -0.52
CCDC88A-201ENST00000263630 ZIC4Q8N9L1 334 aa11.82□□□□□ -0.52
CCDC88A-201ENST00000263630 OR10W1Q8NGF6 305 aa11.82□□□□□ -0.52
CCDC88A-201ENST00000263630 QSER1Q2KHR3 1735 aa11.82□□□□□ -0.52
CCDC88A-201ENST00000263630 DPM3Q9P2X0 92 aa11.82□□□□□ -0.52
CCDC88A-201ENST00000263630 NOTCH3Q9UM47 2321 aa11.82□□□□□ -0.52
CCDC88A-201ENST00000263630 NDUFAF3Q9BU61 184 aa11.82□□□□□ -0.52
CCDC88A-201ENST00000263630 ZNF703Q9H7S9 590 aaPredicted RBP11.82□□□□□ -0.52
CCDC88A-201ENST00000263630 C5orf66Q9H5L9 145 aa11.81□□□□□ -0.52
CCDC88A-201ENST00000263630 TRACP01848 142 aa11.81□□□□□ -0.52
CCDC88A-201ENST00000263630 NEU4Q8WWR8 484 aaPredicted RBP11.81□□□□□ -0.52
CCDC88A-201ENST00000263630 IGKV1D-33P01593 117 aa11.81□□□□□ -0.52
CCDC88A-201ENST00000263630 IGKV1-33P01594 117 aa11.81□□□□□ -0.52
CCDC88A-201ENST00000263630 COX5BP10606 129 aa11.81□□□□□ -0.52
CCDC88A-201ENST00000263630 NHLRC3Q5JS37 347 aa11.81□□□□□ -0.52
CCDC88A-201ENST00000263630 TMEM126AQ9H061 195 aa11.81□□□□□ -0.52
CCDC88A-201ENST00000263630 CD5P06127 495 aa11.81□□□□□ -0.52
CCDC88A-201ENST00000263630 CCL1P22362 96 aa11.81□□□□□ -0.52
CCDC88A-201ENST00000263630 C1QTNF12Q5T7M4 302 aa11.81□□□□□ -0.52
CCDC88A-201ENST00000263630 CLEC19AQ6UXS0 136 aa11.81□□□□□ -0.52
CCDC88A-201ENST00000263630 UPK3AO75631 287 aa11.81□□□□□ -0.52
CCDC88A-201ENST00000263630 APOBEC3AP31941 199 aaPredicted RBP11.81□□□□□ -0.52
CCDC88A-201ENST00000263630 RCC1LQ96I51 464 aaKnown RBP11.81□□□□□ -0.52
CCDC88A-201ENST00000263630 C1QL3Q5VWW1 255 aa11.81□□□□□ -0.52
CCDC88A-201ENST00000263630 NGFRP08138 427 aa11.81□□□□□ -0.52
CCDC88A-201ENST00000263630 TEX43Q6ZNM6 134 aa11.81□□□□□ -0.52
CCDC88A-201ENST00000263630 SOCS3O14543 225 aa11.8□□□□□ -0.52
CCDC88A-201ENST00000263630 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.8□□□□□ -0.52
CCDC88A-201ENST00000263630 NRN1LQ496H8 165 aa11.8□□□□□ -0.52
CCDC88A-201ENST00000263630 KLF14Q8TD94 323 aaPredicted RBP11.8□□□□□ -0.52
CCDC88A-201ENST00000263630 TNFRSF14Q92956 283 aa11.8□□□□□ -0.52
CCDC88A-201ENST00000263630 SPINK8P0C7L1 97 aa11.8□□□□□ -0.52
CCDC88A-201ENST00000263630 ZP1P60852 638 aa11.8□□□□□ -0.52
CCDC88A-201ENST00000263630 A0A1B0GTL3 188 aa11.8□□□□□ -0.52
CCDC88A-201ENST00000263630 IGHV3-48P01763 117 aa11.8□□□□□ -0.52
CCDC88A-201ENST00000263630 ERCC8Q13216 396 aa11.8□□□□□ -0.52
CCDC88A-201ENST00000263630 ZNF236Q9UL36 1845 aa11.8□□□□□ -0.52
CCDC88A-201ENST00000263630 TMEM187Q14656 261 aa11.8□□□□□ -0.52
CCDC88A-201ENST00000263630 J3QW42 95 aa11.8□□□□□ -0.52
CCDC88A-201ENST00000263630 IGHV3-23P01764 117 aa11.8□□□□□ -0.52
CCDC88A-201ENST00000263630 IFI27L1Q96BM0 104 aa11.8□□□□□ -0.52
CCDC88A-201ENST00000263630 IGHV3-49A0A0A0MS15 119 aa11.79□□□□□ -0.52
CCDC88A-201ENST00000263630 MAJINQ3KP22 176 aa11.79□□□□□ -0.52
CCDC88A-201ENST00000263630 UBL5Q9BZL1 73 aa11.79□□□□□ -0.52
CCDC88A-201ENST00000263630 PILRBQ9UKJ0 227 aa11.79□□□□□ -0.52
CCDC88A-201ENST00000263630 LINC01565O15544 149 aa11.79□□□□□ -0.52
CCDC88A-201ENST00000263630 PMVKQ15126 192 aa11.79□□□□□ -0.52
CCDC88A-201ENST00000263630 C6orf226Q5I0X4 101 aa11.79□□□□□ -0.52
CCDC88A-201ENST00000263630 FAM168AQ92567 244 aa11.79□□□□□ -0.52
CCDC88A-201ENST00000263630 PVRIGQ6DKI7 326 aa11.79□□□□□ -0.52
CCDC88A-201ENST00000263630 MSRB3Q8IXL7 192 aa11.79□□□□□ -0.52
CCDC88A-201ENST00000263630 IGHV3-35A0A0C4DH35 117 aa11.79□□□□□ -0.52
CCDC88A-201ENST00000263630 SERF1AO75920 110 aa11.79□□□□□ -0.52
CCDC88A-201ENST00000263630 IRF3Q14653 427 aa11.79□□□□□ -0.52
CCDC88A-201ENST00000263630 IGHV3-64A0A075B6Q5 118 aa11.79□□□□□ -0.52
CCDC88A-201ENST00000263630 VN1R4Q7Z5H5 301 aa11.79□□□□□ -0.52
CCDC88A-201ENST00000263630 SMAD7O15105 426 aaKnown RBP11.79□□□□□ -0.52
CCDC88A-201ENST00000263630 ZIC3O60481 467 aa11.79□□□□□ -0.52
CCDC88A-201ENST00000263630 SS18Q15532 418 aa11.79□□□□□ -0.52
CCDC88A-201ENST00000263630 C9orf40Q8IXQ3 194 aa11.79□□□□□ -0.52
CCDC88A-201ENST00000263630 PLPPR1Q8TBJ4 325 aa11.79□□□□□ -0.52
CCDC88A-201ENST00000263630 ZNF826PQ6ZT77 177 aa11.78□□□□□ -0.52
CCDC88A-201ENST00000263630 KLF4O43474 513 aa11.78□□□□□ -0.52
CCDC88A-201ENST00000263630 DRD3P35462 400 aa11.78□□□□□ -0.52
CCDC88A-201ENST00000263630 ZNRF1Q8ND25 227 aa11.78□□□□□ -0.52
CCDC88A-201ENST00000263630 IGHV3OR16-13A0A075B7E8 117 aa11.78□□□□□ -0.52
CCDC88A-201ENST00000263630 IGHV3-74A0A0B4J1X5 117 aa11.78□□□□□ -0.52
CCDC88A-201ENST00000263630 MLNRO43193 412 aa11.78□□□□□ -0.52
CCDC88A-201ENST00000263630 FAM60AQ9NP50 221 aa11.78□□□□□ -0.52
CCDC88A-201ENST00000263630 EFNB1P98172 346 aa11.78□□□□□ -0.52
CCDC88A-201ENST00000263630 LEAP2Q969E1 77 aa11.78□□□□□ -0.52
CCDC88A-201ENST00000263630 DSCR8Q96T75 97 aa11.78□□□□□ -0.52
CCDC88A-201ENST00000263630 TRAV41A0A0B4J266 112 aa11.78□□□□□ -0.52
CCDC88A-201ENST00000263630 MYMXA0A1B0GTQ4 84 aa11.78□□□□□ -0.52
CCDC88A-201ENST00000263630 Q96M66 194 aa11.78□□□□□ -0.52
CCDC88A-201ENST00000263630 ZNF721Q8TF20 911 aa11.77□□□□□ -0.52
CCDC88A-201ENST00000263630 TRAV14DV4A0A0A6YYC5 116 aa11.77□□□□□ -0.52
CCDC88A-201ENST00000263630 MUC21A0A0G2JKD1 596 aa11.77□□□□□ -0.52
CCDC88A-201ENST00000263630 MUC21A0A140T8X8 626 aa11.77□□□□□ -0.52
CCDC88A-201ENST00000263630 MUC21Q5SSG8 566 aa11.77□□□□□ -0.52
CCDC88A-201ENST00000263630 TMEM170AQ8WVE7 144 aa11.77□□□□□ -0.52
CCDC88A-201ENST00000263630 CARHSP1Q9Y2V2 147 aaKnown RBP11.77□□□□□ -0.52
CCDC88A-201ENST00000263630 NDUFC2O95298 119 aa11.77□□□□□ -0.52
CCDC88A-201ENST00000263630 NANOS3P60323 173 aaKnown RBP11.77□□□□□ -0.52
CCDC88A-201ENST00000263630 GFI1BQ5VTD9 330 aa11.77□□□□□ -0.52
CCDC88A-201ENST00000263630 IGFBP2P18065 325 aa11.77□□□□□ -0.53
CCDC88A-201ENST00000263630 A0A0U1RRA0 63 aa11.77□□□□□ -0.53
CCDC88A-201ENST00000263630 OVOL1O14753 267 aa11.77□□□□□ -0.53
CCDC88A-201ENST00000263630 NCR2O95944 276 aa11.77□□□□□ -0.53
CCDC88A-201ENST00000263630 ARFGEF1Q9Y6D6 1849 aa11.77□□□□□ -0.53
CCDC88A-201ENST00000263630 UMODP07911 640 aa11.77□□□□□ -0.53
CCDC88A-201ENST00000263630 EVI2AP22794 236 aa11.77□□□□□ -0.53
CCDC88A-201ENST00000263630 NPC2P61916 151 aa11.77□□□□□ -0.53
CCDC88A-201ENST00000263630 PRSS22Q9GZN4 317 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms