RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 KLK15Q9H2R5 256 aa8.99□□□□□ -0.97
CD44-201ENST00000263398 PRDM13Q9H4Q3 707 aa8.99□□□□□ -0.97
CD44-201ENST00000263398 RPP21Q9H633 154 aaKnown RBP8.99□□□□□ -0.97
CD44-201ENST00000263398 MYO7BQ6PIF6 2116 aa8.99□□□□□ -0.97
CD44-201ENST00000263398 DIDO1Q9BTC0 2240 aaKnown RBP8.99□□□□□ -0.97
CD44-201ENST00000263398 SAA2-SAA4A0A096LPE2 208 aa8.99□□□□□ -0.97
CD44-201ENST00000263398 PRSS2P07478 247 aa8.99□□□□□ -0.97
CD44-201ENST00000263398 SAA2P0DJI9 122 aaPredicted RBP8.99□□□□□ -0.97
CD44-201ENST00000263398 BSPH1Q075Z2 132 aa8.99□□□□□ -0.97
CD44-201ENST00000263398 RTN4RL2Q86UN3 420 aa8.99□□□□□ -0.97
CD44-201ENST00000263398 CIARTQ8N365 385 aaPredicted RBP8.99□□□□□ -0.97
CD44-201ENST00000263398 PRELID3AQ96N28 172 aa8.99□□□□□ -0.97
CD44-201ENST00000263398 PIMREGQ9BSJ6 248 aa8.99□□□□□ -0.97
CD44-201ENST00000263398 IZUMO1RA6ND01 250 aa8.99□□□□□ -0.97
CD44-201ENST00000263398 OR11H12B2RN74 326 aa8.99□□□□□ -0.97
CD44-201ENST00000263398 C1QTNF9BB2RNN3 333 aa8.99□□□□□ -0.97
CD44-201ENST00000263398 RAMP3O60896 148 aa8.99□□□□□ -0.97
CD44-201ENST00000263398 DUTP33316 252 aaKnown RBP8.99□□□□□ -0.97
CD44-201ENST00000263398 OR11H1Q8NG94 326 aa8.99□□□□□ -0.97
CD44-201ENST00000263398 OR11H2Q8NH07 326 aa8.99□□□□□ -0.97
CD44-201ENST00000263398 FMC1Q96HJ9 113 aa8.99□□□□□ -0.97
CD44-201ENST00000263398 CYTL1Q9NRR1 136 aa8.99□□□□□ -0.97
CD44-201ENST00000263398 FOXA2Q9Y261 457 aaPredicted RBP8.99□□□□□ -0.97
CD44-201ENST00000263398 IGHV3OR16-13A0A075B7E8 117 aa8.98□□□□□ -0.97
CD44-201ENST00000263398 IGHV3-74A0A0B4J1X5 117 aa8.98□□□□□ -0.97
CD44-201ENST00000263398 A0A1B0GW15 77 aa8.98□□□□□ -0.97
CD44-201ENST00000263398 A0A1W2PRE2 83 aa8.98□□□□□ -0.97
CD44-201ENST00000263398 A1L4Q6 167 aa8.98□□□□□ -0.97
CD44-201ENST00000263398 NTN3O00634 580 aaPredicted RBP8.98□□□□□ -0.97
CD44-201ENST00000263398 HIST1H2BKO60814 126 aa8.98□□□□□ -0.97
CD44-201ENST00000263398 HIST1H2BJP06899 126 aa8.98□□□□□ -0.97
CD44-201ENST00000263398 C1QTNF9P0C862 333 aa8.98□□□□□ -0.97
CD44-201ENST00000263398 HIST1H2BOP23527 126 aa8.98□□□□□ -0.97
CD44-201ENST00000263398 HIST1H2BBP33778 126 aa8.98□□□□□ -0.97
CD44-201ENST00000263398 ATP5J2P56134 94 aa8.98□□□□□ -0.97
CD44-201ENST00000263398 HIST1H2BDP58876 126 aa8.98□□□□□ -0.97
CD44-201ENST00000263398 HIST1H2BCP62807 126 aa8.98□□□□□ -0.97
CD44-201ENST00000263398 HIST2H2BEQ16778 126 aa8.98□□□□□ -0.97
CD44-201ENST00000263398 PAPPA-AS1Q5QFB9 102 aa8.98□□□□□ -0.97
CD44-201ENST00000263398 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.98□□□□□ -0.97
CD44-201ENST00000263398 LEMD1Q68G75 181 aa8.98□□□□□ -0.97
CD44-201ENST00000263398 HIST1H2BHQ93079 126 aa8.98□□□□□ -0.97
CD44-201ENST00000263398 HIST1H2BNQ99877 126 aa8.98□□□□□ -0.97
CD44-201ENST00000263398 HIST1H2BMQ99879 126 aa8.98□□□□□ -0.97
CD44-201ENST00000263398 ZNF256Q9Y2P7 627 aaPredicted RBP8.98□□□□□ -0.97
CD44-201ENST00000263398 GBF1Q92538 1859 aa8.98□□□□□ -0.97
CD44-201ENST00000263398 CCL3L1P16619 93 aa8.98□□□□□ -0.97
CD44-201ENST00000263398 C19orf54Q5BKX5 351 aa8.98□□□□□ -0.97
CD44-201ENST00000263398 KLHDC3Q9BQ90 382 aa8.98□□□□□ -0.97
CD44-201ENST00000263398 RAXQ9Y2V3 346 aa8.98□□□□□ -0.97
CD44-201ENST00000263398 LINC00587B1AMM8 73 aa8.98□□□□□ -0.97
CD44-201ENST00000263398 PDLIM4P50479 330 aa8.98□□□□□ -0.97
CD44-201ENST00000263398 FAM159AQ6UWV7 190 aa8.98□□□□□ -0.97
CD44-201ENST00000263398 HEPN1Q6WQI6 88 aa8.98□□□□□ -0.97
CD44-201ENST00000263398 C14orf144Q96I85 54 aa8.98□□□□□ -0.97
CD44-201ENST00000263398 OSTCQ9NRP0 149 aa8.98□□□□□ -0.97
CD44-201ENST00000263398 FBXL7Q9UJT9 491 aa8.98□□□□□ -0.97
CD44-201ENST00000263398 F11RQ9Y624 299 aaKnown RBP8.98□□□□□ -0.97
CD44-201ENST00000263398 FAM90A9PA6NNJ1 464 aa8.98□□□□□ -0.97
CD44-201ENST00000263398 APOHP02749 345 aaPredicted RBP8.98□□□□□ -0.97
CD44-201ENST00000263398 KLRB1Q12918 225 aa8.98□□□□□ -0.97
CD44-201ENST00000263398 LY6EQ16553 131 aa8.98□□□□□ -0.97
CD44-201ENST00000263398 PSMG4Q5JS54 123 aa8.98□□□□□ -0.97
CD44-201ENST00000263398 AMMECR1LQ6DCA0 310 aa8.98□□□□□ -0.97
CD44-201ENST00000263398 NEU4Q8WWR8 484 aaPredicted RBP8.98□□□□□ -0.97
CD44-201ENST00000263398 SEMA5BQ9P283 1151 aa8.98□□□□□ -0.97
CD44-201ENST00000263398 HEATR1Q9H583 2144 aaKnown RBP8.97□□□□□ -0.97
CD44-201ENST00000263398 WDR87Q6ZQQ6 2873 aa8.97□□□□□ -0.97
CD44-201ENST00000263398 TRBV24-1A0A075B6N3 115 aa8.97□□□□□ -0.97
CD44-201ENST00000263398 HIGD1CA8MV81 97 aa8.97□□□□□ -0.97
CD44-201ENST00000263398 SERF1AO75920 110 aa8.97□□□□□ -0.97
CD44-201ENST00000263398 IGKV1D-33P01593 117 aa8.97□□□□□ -0.97
CD44-201ENST00000263398 IGKV1-33P01594 117 aa8.97□□□□□ -0.97
CD44-201ENST00000263398 HIST1H1AQ02539 215 aaPredicted RBP8.97□□□□□ -0.97
CD44-201ENST00000263398 TEX29Q8N6K0 151 aa8.97□□□□□ -0.97
CD44-201ENST00000263398 TMEM242Q9NWH2 141 aa8.97□□□□□ -0.97
CD44-201ENST00000263398 TRAV1-1A0A0B4J248 108 aa8.97□□□□□ -0.97
CD44-201ENST00000263398 IGKV3-15P01624 115 aa8.97□□□□□ -0.97
CD44-201ENST00000263398 LGALS3P17931 250 aaKnown RBP8.97□□□□□ -0.97
CD44-201ENST00000263398 CD69Q07108 199 aa8.97□□□□□ -0.97
CD44-201ENST00000263398 GGNQ86UU5 652 aa8.97□□□□□ -0.97
CD44-201ENST00000263398 PEF1Q9UBV8 284 aaKnown RBP8.97□□□□□ -0.97
CD44-201ENST00000263398 PINLYPA6NC86 204 aa8.97□□□□□ -0.97
CD44-201ENST00000263398 UBE2CO00762 179 aa8.97□□□□□ -0.97
CD44-201ENST00000263398 CEACAM1P13688 526 aa8.97□□□□□ -0.97
CD44-201ENST00000263398 Q9H3A6 140 aa8.97□□□□□ -0.97
CD44-201ENST00000263398 PHF3Q92576 2039 aaKnown RBP8.97□□□□□ -0.97
CD44-201ENST00000263398 COLCA2A8K830 154 aa8.97□□□□□ -0.97
CD44-201ENST00000263398 H7C2G1 150 aa8.97□□□□□ -0.97
CD44-201ENST00000263398 TRGV3P03979 118 aa8.97□□□□□ -0.97
CD44-201ENST00000263398 FOXG1P55316 489 aaPredicted RBP8.97□□□□□ -0.97
CD44-201ENST00000263398 SNRPD3P62318 126 aaKnown RBP8.97□□□□□ -0.97
CD44-201ENST00000263398 FAM19A2Q8N3H0 131 aa8.97□□□□□ -0.97
CD44-201ENST00000263398 IGKV1-27A0A075B6S5 117 aa8.96□□□□□ -0.97
CD44-201ENST00000263398 ATP5LO75964 103 aa8.96□□□□□ -0.97
CD44-201ENST00000263398 PPP1R17O96001 155 aa8.96□□□□□ -0.97
CD44-201ENST00000263398 COX6B1P14854 86 aa8.96□□□□□ -0.97
CD44-201ENST00000263398 PRCDQ00LT1 54 aa8.96□□□□□ -0.97
CD44-201ENST00000263398 JOSD1Q15040 202 aaPredicted RBP8.96□□□□□ -0.97
CD44-201ENST00000263398 ABHD17AQ96GS6 310 aa8.96□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms