RNA–Protein interactions for RNA: ENST00000263066.10

LDB3-201, Transcript of LIM domain binding 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDB3, Length 3,873 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-201ENST00000263066 TRAV17A0A0B4J275 112 aa7.04□□□□□ -1.28
LDB3-201ENST00000263066 PPIFP30405 207 aaKnown RBP7.04□□□□□ -1.28
LDB3-201ENST00000263066 CDAP32320 146 aa7.04□□□□□ -1.28
LDB3-201ENST00000263066 TIMP3P35625 211 aa7.04□□□□□ -1.28
LDB3-201ENST00000263066 C5orf64Q2M2E5 130 aa7.04□□□□□ -1.28
LDB3-201ENST00000263066 NRN1LQ496H8 165 aa7.04□□□□□ -1.28
LDB3-201ENST00000263066 OR10J3Q5JRS4 329 aa7.04□□□□□ -1.28
LDB3-201ENST00000263066 PQLC2Q6ZP29 291 aa7.04□□□□□ -1.28
LDB3-201ENST00000263066 RNF144BQ7Z419 303 aa7.04□□□□□ -1.28
LDB3-201ENST00000263066 SPACA3Q8IXA5 215 aa7.04□□□□□ -1.28
LDB3-201ENST00000263066 C3orf56Q8N813 242 aa7.04□□□□□ -1.28
LDB3-201ENST00000263066 PPP1R35Q8TAP8 253 aa7.04□□□□□ -1.28
LDB3-201ENST00000263066 TM4SF19Q96DZ7 209 aa7.04□□□□□ -1.28
LDB3-201ENST00000263066 AGMATQ9BSE5 352 aa7.04□□□□□ -1.28
LDB3-201ENST00000263066 TMEM140Q9NV12 185 aa7.04□□□□□ -1.28
LDB3-201ENST00000263066 F2RL2O00254 374 aa7.04□□□□□ -1.28
LDB3-201ENST00000263066 CCL2P13500 99 aa7.04□□□□□ -1.28
LDB3-201ENST00000263066 RPL31P62899 125 aaKnown RBP7.04□□□□□ -1.28
LDB3-201ENST00000263066 PSG4Q00888 419 aa7.04□□□□□ -1.28
LDB3-201ENST00000263066 PLP2Q04941 152 aa7.04□□□□□ -1.28
LDB3-201ENST00000263066 CATR1Q13166 79 aa7.04□□□□□ -1.28
LDB3-201ENST00000263066 ZNF141Q15928 474 aa7.04□□□□□ -1.28
LDB3-201ENST00000263066 ZNF562Q6V9R5 426 aa7.04□□□□□ -1.28
LDB3-201ENST00000263066 PPP1R32Q7Z5V6 425 aa7.04□□□□□ -1.28
LDB3-201ENST00000263066 PRSS3P2Q8NHM4 247 aa7.04□□□□□ -1.28
LDB3-201ENST00000263066 SSC4DQ8WTU2 575 aa7.04□□□□□ -1.28
LDB3-201ENST00000263066 LSM10Q969L4 123 aaKnown RBP7.04□□□□□ -1.28
LDB3-201ENST00000263066 GALMQ96C23 342 aa7.04□□□□□ -1.28
LDB3-201ENST00000263066 DAZAP1Q96EP5 407 aaKnown RBP7.04□□□□□ -1.28
LDB3-201ENST00000263066 VSTM2LQ96N03 204 aa7.04□□□□□ -1.28
LDB3-201ENST00000263066 RNASE7Q9H1E1 156 aaKnown RBP7.04□□□□□ -1.28
LDB3-201ENST00000263066 DLL3Q9NYJ7 618 aa7.04□□□□□ -1.28
LDB3-201ENST00000263066 KIAA1549Q9HCM3 1950 aa7.04□□□□□ -1.28
LDB3-201ENST00000263066 PIGBOS1A0A0B4J2F0 54 aa7.04□□□□□ -1.28
LDB3-201ENST00000263066 WIPF3A6NGB9 483 aa7.04□□□□□ -1.28
LDB3-201ENST00000263066 SNCGO76070 127 aa7.04□□□□□ -1.28
LDB3-201ENST00000263066 RFPL3SP0C7P2 107 aa7.04□□□□□ -1.28
LDB3-201ENST00000263066 EMP1P54849 157 aa7.04□□□□□ -1.28
LDB3-201ENST00000263066 YPEL3P61236 119 aaPredicted RBP7.04□□□□□ -1.28
LDB3-201ENST00000263066 GNB1P62873 340 aa7.04□□□□□ -1.28
LDB3-201ENST00000263066 ZNF726P1Q15940 193 aa7.04□□□□□ -1.28
LDB3-201ENST00000263066 GAGE13Q4V321 117 aa7.04□□□□□ -1.28
LDB3-201ENST00000263066 DOK3Q7L591 496 aa7.04□□□□□ -1.28
LDB3-201ENST00000263066 C1QL2Q7Z5L3 287 aa7.04□□□□□ -1.28
LDB3-201ENST00000263066 FLVCR1-AS1Q8TAF5 88 aa7.04□□□□□ -1.28
LDB3-201ENST00000263066 HES4Q9HCC6 221 aa7.04□□□□□ -1.28
LDB3-201ENST00000263066 USP9XQ93008 2570 aaPredicted RBP7.03□□□□□ -1.28
LDB3-201ENST00000263066 LYZL6O75951 148 aa7.03□□□□□ -1.28
LDB3-201ENST00000263066 BGLAPP02818 100 aa7.03□□□□□ -1.28
LDB3-201ENST00000263066 CRYBB3P26998 211 aa7.03□□□□□ -1.28
LDB3-201ENST00000263066 ZNF114Q8NC26 417 aa7.03□□□□□ -1.28
LDB3-201ENST00000263066 SPSB4Q96A44 273 aa7.03□□□□□ -1.28
LDB3-201ENST00000263066 INSIG2Q9Y5U4 225 aa7.03□□□□□ -1.28
LDB3-201ENST00000263066 TRAV36DV7A0A075B6V5 113 aa7.03□□□□□ -1.28
LDB3-201ENST00000263066 LY6G6EA0A0G2JKS1 128 aa7.03□□□□□ -1.28
LDB3-201ENST00000263066 A0A1W2PPM0 123 aa7.03□□□□□ -1.28
LDB3-201ENST00000263066 YPEL1O60688 119 aa7.03□□□□□ -1.28
LDB3-201ENST00000263066 IGFBP3P17936 291 aaPredicted RBP7.03□□□□□ -1.28
LDB3-201ENST00000263066 CA6P23280 308 aa7.03□□□□□ -1.28
LDB3-201ENST00000263066 RPL32P62910 135 aaKnown RBP7.03□□□□□ -1.28
LDB3-201ENST00000263066 LRRC75BQ2VPJ9 315 aa7.03□□□□□ -1.28
LDB3-201ENST00000263066 SPATA46Q5T0L3 261 aa7.03□□□□□ -1.28
LDB3-201ENST00000263066 MSI2Q96DH6 328 aaKnown RBP7.03□□□□□ -1.28
LDB3-201ENST00000263066 YPEL2Q96QA6 119 aa7.03□□□□□ -1.28
LDB3-201ENST00000263066 TMEM147Q9BVK8 224 aa7.03□□□□□ -1.28
LDB3-201ENST00000263066 FZR1Q9UM11 496 aa7.03□□□□□ -1.28
LDB3-201ENST00000263066 U3KQA8 63 aa7.03□□□□□ -1.28
LDB3-201ENST00000263066 PLXND1Q9Y4D7 1925 aa7.03□□□□□ -1.28
LDB3-201ENST00000263066 C3orf80F5H4A9 247 aa7.03□□□□□ -1.28
LDB3-201ENST00000263066 H3BRM9 83 aa7.03□□□□□ -1.28
LDB3-201ENST00000263066 FRMD6-AS1P0C7T7 363 aa7.03□□□□□ -1.28
LDB3-201ENST00000263066 SCGB1C2P0DMR2 95 aa7.03□□□□□ -1.28
LDB3-201ENST00000263066 IL11P20809 199 aa7.03□□□□□ -1.28
LDB3-201ENST00000263066 GATA3P23771 443 aa7.03□□□□□ -1.28
LDB3-201ENST00000263066 GNG3P63215 75 aa7.03□□□□□ -1.28
LDB3-201ENST00000263066 GAGE2BQ13066 116 aa7.03□□□□□ -1.28
LDB3-201ENST00000263066 WFDC2Q14508 124 aa7.03□□□□□ -1.28
LDB3-201ENST00000263066 GAGE2EQ4V326 116 aa7.03□□□□□ -1.28
LDB3-201ENST00000263066 IBA57Q5T440 356 aaKnown RBP7.03□□□□□ -1.28
LDB3-201ENST00000263066 OR10X1Q8NGY0 326 aa7.03□□□□□ -1.28
LDB3-201ENST00000263066 SSMEM1Q8WWF3 244 aa7.03□□□□□ -1.28
LDB3-201ENST00000263066 PIGCQ92535 297 aa7.03□□□□□ -1.28
LDB3-201ENST00000263066 C18orf12Q96KH6 178 aa7.03□□□□□ -1.28
LDB3-201ENST00000263066 GNB1LQ9BYB4 327 aa7.03□□□□□ -1.28
LDB3-201ENST00000263066 GAGE2DQ9UEU5 116 aa7.03□□□□□ -1.28
LDB3-201ENST00000263066 HECTD1Q9ULT8 2610 aa7.03□□□□□ -1.28
LDB3-201ENST00000263066 GAGE12JA6NER3 117 aa7.02□□□□□ -1.28
LDB3-201ENST00000263066 FRG2CA6NGY1 282 aa7.02□□□□□ -1.28
LDB3-201ENST00000263066 GAGE7O76087 117 aa7.02□□□□□ -1.28
LDB3-201ENST00000263066 NKX2-2O95096 273 aa7.02□□□□□ -1.28
LDB3-201ENST00000263066 GAGE12FP0CL80 117 aa7.02□□□□□ -1.28
LDB3-201ENST00000263066 GAGE12GP0CL81 117 aa7.02□□□□□ -1.28
LDB3-201ENST00000263066 GAGE12IP0CL82 117 aa7.02□□□□□ -1.28
LDB3-201ENST00000263066 B4GALT1P15291 398 aa7.02□□□□□ -1.28
LDB3-201ENST00000263066 RHOBP62745 196 aa7.02□□□□□ -1.28
LDB3-201ENST00000263066 GAGE4Q13068 117 aa7.02□□□□□ -1.28
LDB3-201ENST00000263066 TCTEX1D4Q5JR98 221 aa7.02□□□□□ -1.28
LDB3-201ENST00000263066 C1QTNF4Q9BXJ3 329 aa7.02□□□□□ -1.28
LDB3-201ENST00000263066 TXNIPQ9H3M7 391 aa7.02□□□□□ -1.28
LDB3-201ENST00000263066 TRAV5A0A0B4J249 113 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms