RNA–Protein interactions for RNA: ENST00000250448.2

FOXA1-201, Transcript of forkhead box A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene FOXA1, Length 2,862 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1-201ENST00000250448 NEUROG1Q92886 237 aa13.9□□□□□ -0.18
FOXA1-201ENST00000250448 EAF1Q96JC9 268 aaPredicted RBP13.9□□□□□ -0.18
FOXA1-201ENST00000250448 SEPSECSQ9HD40 501 aaKnown RBP13.9□□□□□ -0.18
FOXA1-201ENST00000250448 FCN1O00602 326 aa13.89□□□□□ -0.19
FOXA1-201ENST00000250448 IER3P46695 156 aa13.89□□□□□ -0.19
FOXA1-201ENST00000250448 TMEM183BQ1AE95 376 aa13.89□□□□□ -0.19
FOXA1-201ENST00000250448 TDRG1Q3Y452 100 aa13.89□□□□□ -0.19
FOXA1-201ENST00000250448 ARSJQ5FYB0 599 aaPredicted RBP13.89□□□□□ -0.19
FOXA1-201ENST00000250448 BAGE3Q86Y29 109 aa13.89□□□□□ -0.19
FOXA1-201ENST00000250448 BAGE2Q86Y30 109 aa13.89□□□□□ -0.19
FOXA1-201ENST00000250448 MIEN1Q9BRT3 115 aa13.89□□□□□ -0.19
FOXA1-201ENST00000250448 IGHV3-13P01766 116 aa13.89□□□□□ -0.19
FOXA1-201ENST00000250448 FAM90A1Q86YD7 464 aa13.89□□□□□ -0.19
FOXA1-201ENST00000250448 OR5AU1Q8NGC0 362 aa13.89□□□□□ -0.19
FOXA1-201ENST00000250448 LRRC29Q8WV35 223 aa13.89□□□□□ -0.19
FOXA1-201ENST00000250448 SNURFLB1AK76 121 aa13.89□□□□□ -0.19
FOXA1-201ENST00000250448 F2Z2F3 143 aa13.89□□□□□ -0.19
FOXA1-201ENST00000250448 TEPPQ6URK8 271 aa13.89□□□□□ -0.19
FOXA1-201ENST00000250448 MMD2Q8IY49 270 aa13.89□□□□□ -0.19
FOXA1-201ENST00000250448 OR2V2Q96R30 315 aa13.89□□□□□ -0.19
FOXA1-201ENST00000250448 S1PR3Q99500 378 aa13.89□□□□□ -0.19
FOXA1-201ENST00000250448 RALYQ9UKM9 306 aaKnown RBP13.89□□□□□ -0.19
FOXA1-201ENST00000250448 SPTAN1Q13813 2472 aaKnown RBP13.88□□□□□ -0.19
FOXA1-201ENST00000250448 FOXH1O75593 365 aa13.88□□□□□ -0.19
FOXA1-201ENST00000250448 PRDX2P32119 198 aa13.88□□□□□ -0.19
FOXA1-201ENST00000250448 UQCRFS1P47985 274 aa13.88□□□□□ -0.19
FOXA1-201ENST00000250448 Q0VG73 95 aa13.88□□□□□ -0.19
FOXA1-201ENST00000250448 SLC24A4Q8NFF2 622 aa13.88□□□□□ -0.19
FOXA1-201ENST00000250448 SAMD10Q9BYL1 202 aa13.88□□□□□ -0.19
FOXA1-201ENST00000250448 PAM16Q9Y3D7 125 aa13.88□□□□□ -0.19
FOXA1-201ENST00000250448 FRMD6-AS1P0C7T7 363 aa13.88□□□□□ -0.19
FOXA1-201ENST00000250448 FAM216AQ8WUB2 273 aa13.88□□□□□ -0.19
FOXA1-201ENST00000250448 VAMP8Q9BV40 100 aa13.88□□□□□ -0.19
FOXA1-201ENST00000250448 IFI27L2Q9H2X8 130 aa13.88□□□□□ -0.19
FOXA1-201ENST00000250448 V9GYV3 84 aa13.88□□□□□ -0.19
FOXA1-201ENST00000250448 TRBV9A0A0B4J1U6 114 aa13.87□□□□□ -0.19
FOXA1-201ENST00000250448 LINC00614P0C842 121 aa13.87□□□□□ -0.19
FOXA1-201ENST00000250448 IRF2P14316 349 aa13.87□□□□□ -0.19
FOXA1-201ENST00000250448 COL8A2P25067 703 aa13.87□□□□□ -0.19
FOXA1-201ENST00000250448 NPY1RP25929 384 aa13.87□□□□□ -0.19
FOXA1-201ENST00000250448 KIR2DS2P43631 304 aa13.87□□□□□ -0.19
FOXA1-201ENST00000250448 C3orf36Q3SXR2 165 aa13.87□□□□□ -0.19
FOXA1-201ENST00000250448 FAM201AQ5SY85 155 aa13.87□□□□□ -0.19
FOXA1-201ENST00000250448 OR4P4Q8NGL7 312 aa13.87□□□□□ -0.19
FOXA1-201ENST00000250448 VN1R17PQ8TDU5 208 aa13.87□□□□□ -0.19
FOXA1-201ENST00000250448 TUBG2Q9NRH3 451 aa13.87□□□□□ -0.19
FOXA1-201ENST00000250448 EPG5Q9HCE0 2579 aa13.87□□□□□ -0.19
FOXA1-201ENST00000250448 DCHS2Q6V1P9 2916 aa13.87□□□□□ -0.19
FOXA1-201ENST00000250448 C15orf61A6NNL5 157 aa13.87□□□□□ -0.19
FOXA1-201ENST00000250448 IGHV3-7P01780 117 aa13.87□□□□□ -0.19
FOXA1-201ENST00000250448 AREGP15514 252 aa13.87□□□□□ -0.19
FOXA1-201ENST00000250448 CHRNB4P30926 498 aa13.87□□□□□ -0.19
FOXA1-201ENST00000250448 MOGAT3Q86VF5 341 aa13.87□□□□□ -0.19
FOXA1-201ENST00000250448 ITLN1Q8WWA0 313 aa13.87□□□□□ -0.19
FOXA1-201ENST00000250448 IGLV3-9A0A075B6K5 115 aa13.86□□□□□ -0.19
FOXA1-201ENST00000250448 ITGB1BP1O14713 200 aa13.86□□□□□ -0.19
FOXA1-201ENST00000250448 RAB31Q13636 194 aa13.86□□□□□ -0.19
FOXA1-201ENST00000250448 WDR73Q6P4I2 378 aa13.86□□□□□ -0.19
FOXA1-201ENST00000250448 OR8I2Q8N0Y5 310 aa13.86□□□□□ -0.19
FOXA1-201ENST00000250448 IGHV3OR15-7A0A075B7D8 119 aa13.86□□□□□ -0.19
FOXA1-201ENST00000250448 A6NNC1 897 aa13.86□□□□□ -0.19
FOXA1-201ENST00000250448 GOSR1O95249 250 aa13.86□□□□□ -0.19
FOXA1-201ENST00000250448 COMPP49747 757 aaPredicted RBP13.86□□□□□ -0.19
FOXA1-201ENST00000250448 OR5I1Q13606 314 aa13.86□□□□□ -0.19
FOXA1-201ENST00000250448 OR4S2Q8NH73 311 aa13.86□□□□□ -0.19
FOXA1-201ENST00000250448 ZNF134P52741 427 aa13.85□□□□□ -0.19
FOXA1-201ENST00000250448 ADIPOQQ15848 244 aa13.85□□□□□ -0.19
FOXA1-201ENST00000250448 CENPWQ5EE01 88 aa13.85□□□□□ -0.19
FOXA1-201ENST00000250448 DDB2Q92466 427 aa13.85□□□□□ -0.19
FOXA1-201ENST00000250448 GNB1LQ9BYB4 327 aa13.85□□□□□ -0.19
FOXA1-201ENST00000250448 PLAUP00749 431 aa13.85□□□□□ -0.19
FOXA1-201ENST00000250448 IGFBP2P18065 325 aa13.85□□□□□ -0.19
FOXA1-201ENST00000250448 LOXL3P58215 753 aa13.85□□□□□ -0.19
FOXA1-201ENST00000250448 MIR17HGQ75NE6 70 aa13.85□□□□□ -0.19
FOXA1-201ENST00000250448 C1orf174Q8IYL3 243 aa13.85□□□□□ -0.19
FOXA1-201ENST00000250448 HRNRQ86YZ3 2850 aaPredicted RBP13.85□□□□□ -0.19
FOXA1-201ENST00000250448 IGKV1D-17A0A075B6S4 117 aa13.85□□□□□ -0.19
FOXA1-201ENST00000250448 TMEM238C9JI98 176 aa13.85□□□□□ -0.19
FOXA1-201ENST00000250448 GNG4P50150 75 aa13.85□□□□□ -0.19
FOXA1-201ENST00000250448 PRR20EP86478 221 aa13.85□□□□□ -0.19
FOXA1-201ENST00000250448 PRR20CP86479 221 aa13.85□□□□□ -0.19
FOXA1-201ENST00000250448 PRR20DP86480 221 aa13.85□□□□□ -0.19
FOXA1-201ENST00000250448 PRR20BP86481 221 aa13.85□□□□□ -0.19
FOXA1-201ENST00000250448 PRR20AP86496 221 aa13.85□□□□□ -0.19
FOXA1-201ENST00000250448 GNB4Q9HAV0 340 aa13.85□□□□□ -0.19
FOXA1-201ENST00000250448 FBXL7Q9UJT9 491 aa13.85□□□□□ -0.19
FOXA1-201ENST00000250448 ARL2-SNX15V9GYD0 113 aa13.85□□□□□ -0.19
FOXA1-201ENST00000250448 F2RL2O00254 374 aa13.84□□□□□ -0.19
FOXA1-201ENST00000250448 MGST3O14880 152 aa13.84□□□□□ -0.19
FOXA1-201ENST00000250448 CA2P00918 260 aa13.84□□□□□ -0.19
FOXA1-201ENST00000250448 IGHV1-46P01743 117 aa13.84□□□□□ -0.19
FOXA1-201ENST00000250448 CCL8P80075 99 aa13.84□□□□□ -0.19
FOXA1-201ENST00000250448 SIGLECL1Q8N7X8 197 aa13.84□□□□□ -0.19
FOXA1-201ENST00000250448 ENY2Q9NPA8 101 aa13.84□□□□□ -0.19
FOXA1-201ENST00000250448 SLC25A10Q9UBX3 287 aaPredicted RBP13.84□□□□□ -0.19
FOXA1-201ENST00000250448 FOXA2Q9Y261 457 aaPredicted RBP13.84□□□□□ -0.19
FOXA1-201ENST00000250448 RNF114Q9Y508 228 aa13.84□□□□□ -0.19
FOXA1-201ENST00000250448 ACTL6BO94805 426 aa13.84□□□□□ -0.19
FOXA1-201ENST00000250448 SELENOVP59797 346 aa13.84□□□□□ -0.19
FOXA1-201ENST00000250448 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 1281 ms