RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 MINOS1-NBL1R4GNA1 71 aa5.19□□□□□ -1.58
SCN1A-217ENST00000637988 NCOR1O75376 2440 aa5.19□□□□□ -1.58
SCN1A-217ENST00000637988 PEX11BO96011 259 aa5.19□□□□□ -1.58
SCN1A-217ENST00000637988 INSP01308 110 aa5.19□□□□□ -1.58
SCN1A-217ENST00000637988 HLA-DQA1P01909 254 aa5.19□□□□□ -1.58
SCN1A-217ENST00000637988 ARL14EPLP0DKL9 152 aa5.19□□□□□ -1.58
SCN1A-217ENST00000637988 TIMP3P35625 211 aa5.19□□□□□ -1.58
SCN1A-217ENST00000637988 FBLIM1Q8WUP2 373 aa5.19□□□□□ -1.58
SCN1A-217ENST00000637988 ADAMTS9Q9P2N4 1935 aa5.19□□□□□ -1.58
SCN1A-217ENST00000637988 TRBV7-1A0A0A6YYK4 115 aa5.19□□□□□ -1.58
SCN1A-217ENST00000637988 C7orf71A4D174 169 aa5.19□□□□□ -1.58
SCN1A-217ENST00000637988 CDC42EP2O14613 210 aa5.19□□□□□ -1.58
SCN1A-217ENST00000637988 GZMBP10144 247 aa5.19□□□□□ -1.58
SCN1A-217ENST00000637988 SNAI3Q3KNW1 292 aa5.19□□□□□ -1.58
SCN1A-217ENST00000637988 IGSF11Q5DX21 431 aa5.19□□□□□ -1.58
SCN1A-217ENST00000637988 LYZL2Q7Z4W2 148 aa5.19□□□□□ -1.58
SCN1A-217ENST00000637988 VMO1Q7Z5L0 202 aa5.19□□□□□ -1.58
SCN1A-217ENST00000637988 RNF182Q8N6D2 247 aa5.19□□□□□ -1.58
SCN1A-217ENST00000637988 MZB1Q8WU39 189 aa5.19□□□□□ -1.58
SCN1A-217ENST00000637988 ASCL2Q99929 193 aa5.19□□□□□ -1.58
SCN1A-217ENST00000637988 SIP14410 1827 aa5.19□□□□□ -1.58
SCN1A-217ENST00000637988 TRAV21A0A0B4J279 112 aa5.19□□□□□ -1.58
SCN1A-217ENST00000637988 SCTP09683 121 aa5.19□□□□□ -1.58
SCN1A-217ENST00000637988 SAA1P0DJI8 122 aaPredicted RBP5.19□□□□□ -1.58
SCN1A-217ENST00000637988 HIST1H2BAQ96A08 127 aa5.19□□□□□ -1.58
SCN1A-217ENST00000637988 USMG5Q96IX5 58 aa5.19□□□□□ -1.58
SCN1A-217ENST00000637988 TRAV41A0A0B4J266 112 aa5.18□□□□□ -1.58
SCN1A-217ENST00000637988 MSGN1A6NI15 193 aa5.18□□□□□ -1.58
SCN1A-217ENST00000637988 C15orf61A6NNL5 157 aa5.18□□□□□ -1.58
SCN1A-217ENST00000637988 IFI6P09912 130 aa5.18□□□□□ -1.58
SCN1A-217ENST00000637988 VKORC1L1Q8N0U8 176 aa5.18□□□□□ -1.58
SCN1A-217ENST00000637988 FGFRL1Q8N441 504 aa5.18□□□□□ -1.58
SCN1A-217ENST00000637988 TEX45Q8NA69 505 aa5.18□□□□□ -1.58
SCN1A-217ENST00000637988 PTPRFP10586 1907 aa5.18□□□□□ -1.58
SCN1A-217ENST00000637988 TNFRSF6BO95407 300 aa5.18□□□□□ -1.58
SCN1A-217ENST00000637988 RHOGP84095 191 aa5.18□□□□□ -1.58
SCN1A-217ENST00000637988 TNFRSF9Q07011 255 aa5.18□□□□□ -1.58
SCN1A-217ENST00000637988 TMEM133Q9H2Q1 129 aa5.18□□□□□ -1.58
SCN1A-217ENST00000637988 BEX4Q9NWD9 120 aaPredicted RBP5.18□□□□□ -1.58
SCN1A-217ENST00000637988 KIAA1671Q9BY89 1806 aa5.18□□□□□ -1.58
SCN1A-217ENST00000637988 KIAA1644Q3SXP7 199 aa5.18□□□□□ -1.58
SCN1A-217ENST00000637988 ZNF257Q9Y2Q1 563 aa5.18□□□□□ -1.58
SCN1A-217ENST00000637988 TMEM131Q92545 1883 aa5.18□□□□□ -1.58
SCN1A-217ENST00000637988 ICAM4Q14773 271 aa5.18□□□□□ -1.58
SCN1A-217ENST00000637988 TMEM136Q6ZRR5 245 aa5.18□□□□□ -1.58
SCN1A-217ENST00000637988 TNFRSF14Q92956 283 aa5.18□□□□□ -1.58
SCN1A-217ENST00000637988 SCGB3A1Q96QR1 104 aa5.18□□□□□ -1.58
SCN1A-217ENST00000637988 NPCDR1Q9BY65 106 aa5.18□□□□□ -1.58
SCN1A-217ENST00000637988 IGHV1-2P23083 117 aa5.18□□□□□ -1.58
SCN1A-217ENST00000637988 FAM3BP58499 235 aaPredicted RBP5.18□□□□□ -1.58
SCN1A-217ENST00000637988 SPSB4Q96A44 273 aa5.18□□□□□ -1.58
SCN1A-217ENST00000637988 ST20Q9HBF5 79 aa5.18□□□□□ -1.58
SCN1A-217ENST00000637988 C2orf16Q68DN1 1984 aa5.18□□□□□ -1.58
SCN1A-217ENST00000637988 HMSDA8MTL9 139 aa5.18□□□□□ -1.58
SCN1A-217ENST00000637988 PEX7O00628 323 aa5.18□□□□□ -1.58
SCN1A-217ENST00000637988 ZNF708P17019 499 aa5.18□□□□□ -1.58
SCN1A-217ENST00000637988 GLIPR1P48060 266 aa5.18□□□□□ -1.58
SCN1A-217ENST00000637988 DAD1P61803 113 aa5.18□□□□□ -1.58
SCN1A-217ENST00000637988 MGAT2Q10469 447 aa5.18□□□□□ -1.58
SCN1A-217ENST00000637988 PSMG4Q5JS54 123 aa5.18□□□□□ -1.58
SCN1A-217ENST00000637988 C10orf126Q8N4M7 172 aa5.18□□□□□ -1.58
SCN1A-217ENST00000637988 OR2K2Q8NGT1 345 aa5.18□□□□□ -1.58
SCN1A-217ENST00000637988 WDYHV1Q96HA8 205 aa5.18□□□□□ -1.58
SCN1A-217ENST00000637988 TMEM222Q9H0R3 208 aa5.18□□□□□ -1.58
SCN1A-217ENST00000637988 SMDT1Q9H4I9 107 aa5.18□□□□□ -1.58
SCN1A-217ENST00000637988 TBL2Q9Y4P3 447 aaKnown RBP5.18□□□□□ -1.58
SCN1A-217ENST00000637988 GVINP1Q7Z2Y8 2422 aa5.18□□□□□ -1.58
SCN1A-217ENST00000637988 TMEM158Q8WZ71 300 aa5.18□□□□□ -1.58
SCN1A-217ENST00000637988 DKK4Q9UBT3 224 aa5.18□□□□□ -1.58
SCN1A-217ENST00000637988 RIF1Q5UIP0 2472 aaKnown RBP5.18□□□□□ -1.58
SCN1A-217ENST00000637988 OVOL1O14753 267 aa5.17□□□□□ -1.58
SCN1A-217ENST00000637988 SS18Q15532 418 aa5.17□□□□□ -1.58
SCN1A-217ENST00000637988 NYNRINQ9P2P1 1898 aaKnown RBP5.17□□□□□ -1.58
SCN1A-217ENST00000637988 TRAV24A0A0B4J272 114 aa5.17□□□□□ -1.58
SCN1A-217ENST00000637988 IGHMP01871 453 aa5.17□□□□□ -1.58
SCN1A-217ENST00000637988 ZNF324BQ6AW86 544 aaPredicted RBP5.17□□□□□ -1.58
SCN1A-217ENST00000637988 Q6AWC8 147 aa5.17□□□□□ -1.58
SCN1A-217ENST00000637988 PIP4P2Q8N4L2 257 aa5.17□□□□□ -1.58
SCN1A-217ENST00000637988 IL17DQ8TAD2 202 aa5.17□□□□□ -1.58
SCN1A-217ENST00000637988 NPIPB3Q92617 1050 aa5.17□□□□□ -1.58
SCN1A-217ENST00000637988 FAM206AQ9NX38 181 aa5.17□□□□□ -1.58
SCN1A-217ENST00000637988 A0A1B0GW15 77 aa5.17□□□□□ -1.58
SCN1A-217ENST00000637988 RNF223E7ERA6 249 aa5.17□□□□□ -1.58
SCN1A-217ENST00000637988 MOSPD3O75425 235 aa5.17□□□□□ -1.58
SCN1A-217ENST00000637988 LEPROTL1O95214 131 aa5.17□□□□□ -1.58
SCN1A-217ENST00000637988 SNRPCP09234 159 aaKnown RBP5.17□□□□□ -1.58
SCN1A-217ENST00000637988 CA7P43166 264 aa5.17□□□□□ -1.58
SCN1A-217ENST00000637988 FOXB2Q5VYV0 432 aa5.17□□□□□ -1.58
SCN1A-217ENST00000637988 RCHY1Q96PM5 261 aa5.17□□□□□ -1.58
SCN1A-217ENST00000637988 PMCHL2Q9BQD1 86 aa5.17□□□□□ -1.58
SCN1A-217ENST00000637988 IGKV3D-20A0A0C4DH25 116 aa5.17□□□□□ -1.58
SCN1A-217ENST00000637988 MED19A0JLT2 244 aaPredicted RBP5.17□□□□□ -1.58
SCN1A-217ENST00000637988 IL11P20809 199 aa5.17□□□□□ -1.58
SCN1A-217ENST00000637988 FHITP49789 147 aa5.17□□□□□ -1.58
SCN1A-217ENST00000637988 PRCDQ00LT1 54 aa5.17□□□□□ -1.58
SCN1A-217ENST00000637988 C9orf106Q8NAJ2 232 aa5.17□□□□□ -1.58
SCN1A-217ENST00000637988 GLMPQ8WWB7 406 aa5.17□□□□□ -1.58
SCN1A-217ENST00000637988 J3QLI3 93 aa5.17□□□□□ -1.58
SCN1A-217ENST00000637988 UPK2O00526 184 aa5.17□□□□□ -1.58
SCN1A-217ENST00000637988 PSG1P11464 419 aa5.17□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms