RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 KRTAP1-1Q07627 177 aa14.63□□□□□ -0.07
CLN3-254ENST00000637050 ZNF562Q6V9R5 426 aa14.63□□□□□ -0.07
CLN3-254ENST00000637050 BCL6BQ8N143 479 aaPredicted RBP14.63□□□□□ -0.07
CLN3-254ENST00000637050 RBM14Q96PK6 669 aaKnown RBP14.63□□□□□ -0.07
CLN3-254ENST00000637050 SRSF8Q9BRL6 282 aaKnown RBP14.63□□□□□ -0.07
CLN3-254ENST00000637050 ZMAT5Q9UDW3 170 aaKnown RBP14.63□□□□□ -0.07
CLN3-254ENST00000637050 CSMD1Q96PZ7 3565 aa14.62□□□□□ -0.07
CLN3-254ENST00000637050 CNIH1O95406 144 aa14.62□□□□□ -0.07
CLN3-254ENST00000637050 HLA-DRB1P01911 266 aa14.62□□□□□ -0.07
CLN3-254ENST00000637050 IFNA4P05014 189 aa14.62□□□□□ -0.07
CLN3-254ENST00000637050 FXYD3Q14802 87 aa14.62□□□□□ -0.07
CLN3-254ENST00000637050 VWC2Q2TAL6 325 aa14.62□□□□□ -0.07
CLN3-254ENST00000637050 HSD17B13Q7Z5P4 300 aaPredicted RBP14.62□□□□□ -0.07
CLN3-254ENST00000637050 TMEM147Q9BVK8 224 aa14.62□□□□□ -0.07
CLN3-254ENST00000637050 ITPR3Q14573 2671 aa14.62□□□□□ -0.07
CLN3-254ENST00000637050 CREBBPQ92793 2442 aa14.62□□□□□ -0.07
CLN3-254ENST00000637050 H3BUX3 64 aa14.61□□□□□ -0.07
CLN3-254ENST00000637050 IFNA5P01569 189 aa14.61□□□□□ -0.07
CLN3-254ENST00000637050 CX3CL1P78423 397 aa14.61□□□□□ -0.07
CLN3-254ENST00000637050 TUSC1Q2TAM9 212 aa14.61□□□□□ -0.07
CLN3-254ENST00000637050 DEFB112Q30KQ8 113 aa14.61□□□□□ -0.07
CLN3-254ENST00000637050 ZNF114Q8NC26 417 aa14.61□□□□□ -0.07
CLN3-254ENST00000637050 TMED6Q8WW62 240 aa14.61□□□□□ -0.07
CLN3-254ENST00000637050 RASL11BQ9BPW5 248 aa14.61□□□□□ -0.07
CLN3-254ENST00000637050 SLC25A33Q9BSK2 321 aa14.61□□□□□ -0.07
CLN3-254ENST00000637050 GGACTQ9BVM4 153 aa14.61□□□□□ -0.07
CLN3-254ENST00000637050 PARD6GQ9BYG4 376 aaPredicted RBP14.61□□□□□ -0.07
CLN3-254ENST00000637050 CELSR1Q9NYQ6 3014 aa14.61□□□□□ -0.07
CLN3-254ENST00000637050 MDFIC2A0A1B0GVS7 189 aa14.61□□□□□ -0.07
CLN3-254ENST00000637050 A6NDX4 124 aa14.61□□□□□ -0.07
CLN3-254ENST00000637050 AREGP15514 252 aa14.61□□□□□ -0.07
CLN3-254ENST00000637050 EIF5AL1Q6IS14 154 aaKnown RBP14.61□□□□□ -0.07
CLN3-254ENST00000637050 TMEM219Q86XT9 240 aa14.61□□□□□ -0.07
CLN3-254ENST00000637050 C5orf56Q8N8D9 126 aa14.61□□□□□ -0.07
CLN3-254ENST00000637050 HSD17B11Q8NBQ5 300 aa14.61□□□□□ -0.07
CLN3-254ENST00000637050 P2RX4Q99571 388 aa14.61□□□□□ -0.07
CLN3-254ENST00000637050 UQCC1Q9NVA1 299 aa14.61□□□□□ -0.07
CLN3-254ENST00000637050 MOB4Q9Y3A3 225 aa14.61□□□□□ -0.07
CLN3-254ENST00000637050 ZANQ9Y493 2812 aa14.6□□□□□ -0.07
CLN3-254ENST00000637050 FGF16O43320 207 aa14.6□□□□□ -0.07
CLN3-254ENST00000637050 CD5LO43866 347 aa14.6□□□□□ -0.07
CLN3-254ENST00000637050 SPP1P10451 314 aa14.6□□□□□ -0.07
CLN3-254ENST00000637050 SUB1P53999 127 aaKnown RBP eCLIP14.6□□□□□ -0.07
CLN3-254ENST00000637050 DLK1P80370 383 aa14.6□□□□□ -0.07
CLN3-254ENST00000637050 TEX29Q8N6K0 151 aa14.6□□□□□ -0.07
CLN3-254ENST00000637050 SSMEM1Q8WWF3 244 aa14.6□□□□□ -0.07
CLN3-254ENST00000637050 ABCA1O95477 2261 aa14.6□□□□□ -0.07
CLN3-254ENST00000637050 PLXNB1O43157 2135 aa14.6□□□□□ -0.07
CLN3-254ENST00000637050 IGHV7-81A0A0B4J1V7 117 aa14.59□□□□□ -0.07
CLN3-254ENST00000637050 FBXO24O75426 580 aa14.59□□□□□ -0.07
CLN3-254ENST00000637050 REG1AP05451 166 aa14.59□□□□□ -0.07
CLN3-254ENST00000637050 SEC11BP0C7V7 166 aa14.59□□□□□ -0.07
CLN3-254ENST00000637050 ATP6V0CP27449 155 aa14.59□□□□□ -0.07
CLN3-254ENST00000637050 NDPQ00604 133 aa14.59□□□□□ -0.07
CLN3-254ENST00000637050 FAM74A1Q5RGS3 127 aa14.59□□□□□ -0.07
CLN3-254ENST00000637050 PVRIGQ6DKI7 326 aa14.59□□□□□ -0.07
CLN3-254ENST00000637050 C22orf15Q8WYQ4 148 aa14.59□□□□□ -0.07
CLN3-254ENST00000637050 ARPC1AQ92747 370 aa14.59□□□□□ -0.07
CLN3-254ENST00000637050 WDR61Q9GZS3 305 aaKnown RBP14.59□□□□□ -0.07
CLN3-254ENST00000637050 CCDC168Q8NDH2 2452 aa14.59□□□□□ -0.07
CLN3-254ENST00000637050 SVEP1Q4LDE5 3571 aa14.59□□□□□ -0.07
CLN3-254ENST00000637050 UBE2L5PA0A1B0GUS4 154 aa14.58□□□□□ -0.07
CLN3-254ENST00000637050 APELAP0DMC3 54 aa14.58□□□□□ -0.07
CLN3-254ENST00000637050 MDKP21741 143 aaPredicted RBP14.58□□□□□ -0.07
CLN3-254ENST00000637050 SCGB1C1Q8TD33 95 aa14.58□□□□□ -0.07
CLN3-254ENST00000637050 GNPNAT1Q96EK6 184 aaPredicted RBP14.58□□□□□ -0.07
CLN3-254ENST00000637050 SH3BGRL3Q9H299 93 aa14.58□□□□□ -0.07
CLN3-254ENST00000637050 PITPNC1Q9UKF7 332 aa14.58□□□□□ -0.07
CLN3-254ENST00000637050 RPS10-NUDT3A0A1W2PQS6 291 aa14.58□□□□□ -0.08
CLN3-254ENST00000637050 AMY1AP04745 511 aa14.58□□□□□ -0.08
CLN3-254ENST00000637050 SLC25A24Q6NUK1 477 aa14.58□□□□□ -0.08
CLN3-254ENST00000637050 RNASEH2CQ8TDP1 164 aaKnown RBP14.58□□□□□ -0.08
CLN3-254ENST00000637050 FAM103A1Q9BTL3 118 aaKnown RBP14.58□□□□□ -0.08
CLN3-254ENST00000637050 SLC25A32Q9H2D1 315 aa14.58□□□□□ -0.08
CLN3-254ENST00000637050 FNDC10F2Z333 226 aa14.57□□□□□ -0.08
CLN3-254ENST00000637050 EGR2P11161 476 aaPredicted RBP14.57□□□□□ -0.08
CLN3-254ENST00000637050 IER3P46695 156 aa14.57□□□□□ -0.08
CLN3-254ENST00000637050 RUNX1Q01196 453 aa14.57□□□□□ -0.08
CLN3-254ENST00000637050 LY6EQ16553 131 aa14.57□□□□□ -0.08
CLN3-254ENST00000637050 ARSJQ5FYB0 599 aaPredicted RBP14.57□□□□□ -0.08
CLN3-254ENST00000637050 CLLU1Q5K131 121 aa14.57□□□□□ -0.08
CLN3-254ENST00000637050 FAM122CQ6P4D5 195 aa14.57□□□□□ -0.08
CLN3-254ENST00000637050 OR1P1Q8NH06 330 aa14.57□□□□□ -0.08
CLN3-254ENST00000637050 ABHD5Q8WTS1 349 aa14.57□□□□□ -0.08
CLN3-254ENST00000637050 TAF15Q92804 592 aaKnown RBP eCLIP14.57□□□□□ -0.08
CLN3-254ENST00000637050 HSPB9Q9BQS6 159 aa14.57□□□□□ -0.08
CLN3-254ENST00000637050 PRDM13Q9H4Q3 707 aa14.57□□□□□ -0.08
CLN3-254ENST00000637050 PLA2G2EQ9NZK7 142 aa14.57□□□□□ -0.08
CLN3-254ENST00000637050 FBXO7Q9Y3I1 522 aa14.57□□□□□ -0.08
CLN3-254ENST00000637050 F11RQ9Y624 299 aaKnown RBP14.57□□□□□ -0.08
CLN3-254ENST00000637050 FAM157CP0CG43 387 aa14.56□□□□□ -0.08
CLN3-254ENST00000637050 MFAP2P55001 183 aa14.56□□□□□ -0.08
CLN3-254ENST00000637050 RAB14P61106 215 aa14.56□□□□□ -0.08
CLN3-254ENST00000637050 ASPHD1Q5U4P2 390 aa14.56□□□□□ -0.08
CLN3-254ENST00000637050 C16orf82Q7Z2V1 217 aa14.56□□□□□ -0.08
CLN3-254ENST00000637050 WDR83OSQ9Y284 106 aa14.56□□□□□ -0.08
CLN3-254ENST00000637050 RFNGQ9Y644 331 aa14.56□□□□□ -0.08
CLN3-254ENST00000637050 IGHV4-59P01825 116 aa14.55□□□□□ -0.08
CLN3-254ENST00000637050 NMBP08949 121 aa14.55□□□□□ -0.08
CLN3-254ENST00000637050 GPX4P36969 197 aaPredicted RBP14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms