RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 ENSAO43768 121 aaKnown RBP12.66□□□□□ -0.38
CLN3-251ENST00000636853 IFNA1P01562 189 aa12.66□□□□□ -0.38
CLN3-251ENST00000636853 CDC34P49427 236 aaPredicted RBP12.66□□□□□ -0.38
CLN3-251ENST00000636853 NDUFA6P56556 154 aa12.66□□□□□ -0.38
CLN3-251ENST00000636853 RPL8P62917 257 aaKnown RBP12.66□□□□□ -0.38
CLN3-251ENST00000636853 C9orf152Q5JTZ5 239 aa12.66□□□□□ -0.38
CLN3-251ENST00000636853 FAM90A2PQ658T7 463 aa12.66□□□□□ -0.38
CLN3-251ENST00000636853 SLC35E3Q7Z769 313 aa12.66□□□□□ -0.38
CLN3-251ENST00000636853 OR5B3Q8NH48 314 aa12.66□□□□□ -0.38
CLN3-251ENST00000636853 SSMEM1Q8WWF3 244 aa12.66□□□□□ -0.38
CLN3-251ENST00000636853 COMMD5Q9GZQ3 224 aa12.66□□□□□ -0.38
CLN3-251ENST00000636853 PXMP4Q9Y6I8 212 aa12.66□□□□□ -0.38
CLN3-251ENST00000636853 IGLV2-23P01705 113 aa12.65□□□□□ -0.38
CLN3-251ENST00000636853 COX7A1P24310 79 aa12.65□□□□□ -0.38
CLN3-251ENST00000636853 OPRK1P41145 380 aa12.65□□□□□ -0.38
CLN3-251ENST00000636853 REC114Q7Z4M0 266 aa12.65□□□□□ -0.38
CLN3-251ENST00000636853 NEIL1Q96FI4 390 aaPredicted RBP12.65□□□□□ -0.38
CLN3-251ENST00000636853 LSM4Q9Y4Z0 139 aaKnown RBP12.65□□□□□ -0.38
CLN3-251ENST00000636853 IGLV1-47P01700 117 aa12.65□□□□□ -0.38
CLN3-251ENST00000636853 PAX1P15863 534 aa12.65□□□□□ -0.38
CLN3-251ENST00000636853 IL3RAP26951 378 aa12.65□□□□□ -0.38
CLN3-251ENST00000636853 PKIAP61925 76 aa12.65□□□□□ -0.38
CLN3-251ENST00000636853 C10orf55Q5SWW7 151 aa12.65□□□□□ -0.38
CLN3-251ENST00000636853 MOB3BQ86TA1 216 aa12.65□□□□□ -0.38
CLN3-251ENST00000636853 ITLN2Q8WWU7 325 aaPredicted RBP12.65□□□□□ -0.38
CLN3-251ENST00000636853 C14orf144Q96I85 54 aa12.65□□□□□ -0.38
CLN3-251ENST00000636853 NIPSNAP3BQ9BS92 247 aa12.65□□□□□ -0.38
CLN3-251ENST00000636853 PCGF1Q9BSM1 259 aa12.65□□□□□ -0.38
CLN3-251ENST00000636853 TMEM242Q9NWH2 141 aa12.65□□□□□ -0.38
CLN3-251ENST00000636853 C22orf46C9J442 243 aa12.64□□□□□ -0.39
CLN3-251ENST00000636853 PPP1R2P9O14990 202 aa12.64□□□□□ -0.39
CLN3-251ENST00000636853 SLC25A17O43808 307 aa12.64□□□□□ -0.39
CLN3-251ENST00000636853 USF1P22415 310 aaPredicted RBP12.64□□□□□ -0.39
CLN3-251ENST00000636853 TAGLN2P37802 199 aaKnown RBP12.64□□□□□ -0.39
CLN3-251ENST00000636853 HLA-DRB5Q30154 266 aa12.64□□□□□ -0.39
CLN3-251ENST00000636853 TEPPQ6URK8 271 aa12.64□□□□□ -0.39
CLN3-251ENST00000636853 HIST3H2BBQ8N257 126 aa12.64□□□□□ -0.39
CLN3-251ENST00000636853 TMEM167AQ8TBQ9 72 aa12.64□□□□□ -0.39
CLN3-251ENST00000636853 RAB1CQ92928 201 aa12.64□□□□□ -0.39
CLN3-251ENST00000636853 TVP23CQ96ET8 276 aa12.64□□□□□ -0.39
CLN3-251ENST00000636853 TIMD4Q96H15 378 aa12.64□□□□□ -0.39
CLN3-251ENST00000636853 CLEC7AQ9BXN2 247 aa12.64□□□□□ -0.39
CLN3-251ENST00000636853 TPSG1Q9NRR2 321 aa12.64□□□□□ -0.39
CLN3-251ENST00000636853 NDUFA4L2Q9NRX3 87 aa12.64□□□□□ -0.39
CLN3-251ENST00000636853 ONECUT1Q9UBC0 465 aa12.64□□□□□ -0.39
CLN3-251ENST00000636853 TACC2O95359 2948 aa12.64□□□□□ -0.39
CLN3-251ENST00000636853 HIST1H2BKO60814 126 aa12.64□□□□□ -0.39
CLN3-251ENST00000636853 HIST1H2BJP06899 126 aa12.64□□□□□ -0.39
CLN3-251ENST00000636853 RNASE2P10153 161 aaKnown RBP12.64□□□□□ -0.39
CLN3-251ENST00000636853 HIST1H2BOP23527 126 aa12.64□□□□□ -0.39
CLN3-251ENST00000636853 HIST1H2BBP33778 126 aa12.64□□□□□ -0.39
CLN3-251ENST00000636853 PRRX1P54821 245 aa12.64□□□□□ -0.39
CLN3-251ENST00000636853 HIST1H2BDP58876 126 aa12.64□□□□□ -0.39
CLN3-251ENST00000636853 HIST1H2BCP62807 126 aa12.64□□□□□ -0.39
CLN3-251ENST00000636853 PMS2P11Q13670 270 aa12.64□□□□□ -0.39
CLN3-251ENST00000636853 MLANAQ16655 118 aa12.64□□□□□ -0.39
CLN3-251ENST00000636853 HIST2H2BEQ16778 126 aa12.64□□□□□ -0.39
CLN3-251ENST00000636853 ZNF674Q2M3X9 581 aa12.64□□□□□ -0.39
CLN3-251ENST00000636853 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.64□□□□□ -0.39
CLN3-251ENST00000636853 OR1L8Q8NGR8 309 aa12.64□□□□□ -0.39
CLN3-251ENST00000636853 Q8WTZ3 238 aa12.64□□□□□ -0.39
CLN3-251ENST00000636853 HIST1H2BHQ93079 126 aa12.64□□□□□ -0.39
CLN3-251ENST00000636853 HIST1H2BNQ99877 126 aa12.64□□□□□ -0.39
CLN3-251ENST00000636853 HIST1H2BMQ99879 126 aa12.64□□□□□ -0.39
CLN3-251ENST00000636853 ZNF430Q9H8G1 570 aaPredicted RBP12.64□□□□□ -0.39
CLN3-251ENST00000636853 PKD1L2Q7Z442 2459 aa12.64□□□□□ -0.39
CLN3-251ENST00000636853 PLXNB1O43157 2135 aa12.64□□□□□ -0.39
CLN3-251ENST00000636853 ZNF727A8MUV8 499 aa12.63□□□□□ -0.39
CLN3-251ENST00000636853 MC5RP33032 325 aa12.63□□□□□ -0.39
CLN3-251ENST00000636853 MEF2BQ02080 365 aaPredicted RBP12.63□□□□□ -0.39
CLN3-251ENST00000636853 C4orf17Q53FE4 359 aa12.63□□□□□ -0.39
CLN3-251ENST00000636853 VSTM2AQ8TAG5 236 aa12.63□□□□□ -0.39
CLN3-251ENST00000636853 NEU4Q8WWR8 484 aaPredicted RBP12.63□□□□□ -0.39
CLN3-251ENST00000636853 TNFRSF14Q92956 283 aa12.63□□□□□ -0.39
CLN3-251ENST00000636853 P2RX4Q99571 388 aa12.63□□□□□ -0.39
CLN3-251ENST00000636853 A0A1W2PPV4 95 aa12.63□□□□□ -0.39
CLN3-251ENST00000636853 CGB1A6NKQ9 187 aa12.63□□□□□ -0.39
CLN3-251ENST00000636853 BUB1B-PAK6H3BSN5 160 aa12.63□□□□□ -0.39
CLN3-251ENST00000636853 IGFBP2P18065 325 aa12.63□□□□□ -0.39
CLN3-251ENST00000636853 CDKN1AP38936 164 aa12.63□□□□□ -0.39
CLN3-251ENST00000636853 PSMB3P49720 205 aa12.63□□□□□ -0.39
CLN3-251ENST00000636853 C2orf83Q53S99 150 aa12.63□□□□□ -0.39
CLN3-251ENST00000636853 OR5R1Q8NH85 324 aa12.63□□□□□ -0.39
CLN3-251ENST00000636853 C8orf46Q8TAG6 207 aa12.63□□□□□ -0.39
CLN3-251ENST00000636853 CACNA1AO00555 2505 aa12.62□□□□□ -0.39
CLN3-251ENST00000636853 RND2P52198 227 aa12.62□□□□□ -0.39
CLN3-251ENST00000636853 BSXQ3C1V8 233 aa12.62□□□□□ -0.39
CLN3-251ENST00000636853 DTX2Q86UW9 622 aa12.62□□□□□ -0.39
CLN3-251ENST00000636853 OR10D4PQ8NGN7 298 aa12.62□□□□□ -0.39
CLN3-251ENST00000636853 OR4A5Q8NH83 315 aa12.62□□□□□ -0.39
CLN3-251ENST00000636853 C19orf84I3L1E1 186 aa12.62□□□□□ -0.39
CLN3-251ENST00000636853 PAGE4O60829 102 aa12.62□□□□□ -0.39
CLN3-251ENST00000636853 NDUFS7O75251 213 aa12.62□□□□□ -0.39
CLN3-251ENST00000636853 LIPFP07098 398 aa12.62□□□□□ -0.39
CLN3-251ENST00000636853 CXCL1P09341 107 aa12.62□□□□□ -0.39
CLN3-251ENST00000636853 CNTFRP26992 372 aa12.62□□□□□ -0.39
CLN3-251ENST00000636853 PNRC1Q12796 327 aaPredicted RBP12.62□□□□□ -0.39
CLN3-251ENST00000636853 PNKDQ8N490 385 aa12.62□□□□□ -0.39
CLN3-251ENST00000636853 STPG3Q8N7X2 389 aa12.62□□□□□ -0.39
CLN3-251ENST00000636853 LY6G5BQ8NDX9 201 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 75.4 ms