RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 SONP18583 2426 aaKnown RBP15.95■□□□□ 0.14
CLN3-250ENST00000636839 PRSS46E5RG02 174 aa15.95■□□□□ 0.14
CLN3-250ENST00000636839 CX3CL1P78423 397 aa15.95■□□□□ 0.14
CLN3-250ENST00000636839 ZNF767PQ75MW2 155 aa15.95■□□□□ 0.14
CLN3-250ENST00000636839 SSMEM1Q8WWF3 244 aa15.95■□□□□ 0.14
CLN3-250ENST00000636839 UBQLN2Q9UHD9 624 aa15.95■□□□□ 0.14
CLN3-250ENST00000636839 MAS1LP35410 378 aa15.94■□□□□ 0.14
CLN3-250ENST00000636839 SNCAP37840 140 aa15.94■□□□□ 0.14
CLN3-250ENST00000636839 HBG1P69891 147 aa15.94■□□□□ 0.14
CLN3-250ENST00000636839 HBG2P69892 147 aa15.94■□□□□ 0.14
CLN3-250ENST00000636839 LRRC75BQ2VPJ9 315 aa15.94■□□□□ 0.14
CLN3-250ENST00000636839 BSXQ3C1V8 233 aa15.94■□□□□ 0.14
CLN3-250ENST00000636839 STPG2Q8N412 459 aa15.94■□□□□ 0.14
CLN3-250ENST00000636839 HSPB9Q9BQS6 159 aa15.94■□□□□ 0.14
CLN3-250ENST00000636839 ARV1Q9H2C2 271 aa15.94■□□□□ 0.14
CLN3-250ENST00000636839 FBXO7Q9Y3I1 522 aa15.94■□□□□ 0.14
CLN3-250ENST00000636839 BORCS7-ASMTA0A0B4J1R7 106 aa15.94■□□□□ 0.14
CLN3-250ENST00000636839 LINC01548A6NM66 108 aa15.94■□□□□ 0.14
CLN3-250ENST00000636839 HTR2BP41595 481 aa15.94■□□□□ 0.14
CLN3-250ENST00000636839 P2RX4Q99571 388 aa15.94■□□□□ 0.14
CLN3-250ENST00000636839 FLNBO75369 2602 aaKnown RBP15.93■□□□□ 0.14
CLN3-250ENST00000636839 UBE2L5PA0A1B0GUS4 154 aa15.93■□□□□ 0.14
CLN3-250ENST00000636839 A0A1W2PN81 502 aa15.93■□□□□ 0.14
CLN3-250ENST00000636839 CHRNA7P36544 502 aa15.93■□□□□ 0.14
CLN3-250ENST00000636839 MFAP2P55001 183 aa15.93■□□□□ 0.14
CLN3-250ENST00000636839 RPP30P78346 268 aaKnown RBP15.93■□□□□ 0.14
CLN3-250ENST00000636839 ERHP84090 104 aaKnown RBP15.93■□□□□ 0.14
CLN3-250ENST00000636839 SCARB1Q8WTV0 552 aa15.93■□□□□ 0.14
CLN3-250ENST00000636839 SLC25A33Q9BSK2 321 aa15.93■□□□□ 0.14
CLN3-250ENST00000636839 IGHV7-81A0A0B4J1V7 117 aa15.92■□□□□ 0.14
CLN3-250ENST00000636839 AMY1AP04745 511 aa15.92■□□□□ 0.14
CLN3-250ENST00000636839 RBM14Q96PK6 669 aaKnown RBP15.92■□□□□ 0.14
CLN3-250ENST00000636839 SMR3AQ99954 134 aa15.92■□□□□ 0.14
CLN3-250ENST00000636839 GINS3Q9BRX5 216 aa15.92■□□□□ 0.14
CLN3-250ENST00000636839 SLC25A32Q9H2D1 315 aa15.92■□□□□ 0.14
CLN3-250ENST00000636839 TNFRSF19Q9NS68 423 aa15.92■□□□□ 0.14
CLN3-250ENST00000636839 INS-IGF2F8WCM5 200 aa15.92■□□□□ 0.14
CLN3-250ENST00000636839 IGHV4-59P01825 116 aa15.92■□□□□ 0.14
CLN3-250ENST00000636839 ATP6V0CP27449 155 aa15.92■□□□□ 0.14
CLN3-250ENST00000636839 ZNF562Q6V9R5 426 aa15.92■□□□□ 0.14
CLN3-250ENST00000636839 ZNF48Q96MX3 618 aaPredicted RBP15.92■□□□□ 0.14
CLN3-250ENST00000636839 C1RLQ9NZP8 487 aa15.92■□□□□ 0.14
CLN3-250ENST00000636839 LY86O95711 162 aa15.91■□□□□ 0.14
CLN3-250ENST00000636839 IGHV3-48P01763 117 aa15.91■□□□□ 0.14
CLN3-250ENST00000636839 RAB11AP62491 216 aa15.91■□□□□ 0.14
CLN3-250ENST00000636839 ZNF266Q14584 549 aa15.91■□□□□ 0.14
CLN3-250ENST00000636839 C2orf83Q53S99 150 aa15.91■□□□□ 0.14
CLN3-250ENST00000636839 C5orf56Q8N8D9 126 aa15.91■□□□□ 0.14
CLN3-250ENST00000636839 RASL11BQ9BPW5 248 aa15.91■□□□□ 0.14
CLN3-250ENST00000636839 RSG1Q9BU20 258 aa15.91■□□□□ 0.14
CLN3-250ENST00000636839 DMRT1Q9Y5R6 373 aa15.91■□□□□ 0.14
CLN3-250ENST00000636839 A6NDX4 124 aa15.9■□□□□ 0.14
CLN3-250ENST00000636839 DFFBO76075 338 aa15.9■□□□□ 0.14
CLN3-250ENST00000636839 EGR2P11161 476 aaPredicted RBP15.9■□□□□ 0.14
CLN3-250ENST00000636839 ARSJQ5FYB0 599 aaPredicted RBP15.9■□□□□ 0.14
CLN3-250ENST00000636839 ASPHD1Q5U4P2 390 aa15.9■□□□□ 0.14
CLN3-250ENST00000636839 ABHD5Q8WTS1 349 aa15.9■□□□□ 0.14
CLN3-250ENST00000636839 PINX1Q96BK5 328 aaKnown RBP15.9■□□□□ 0.14
CLN3-250ENST00000636839 RPS10-NUDT3A0A1W2PQS6 291 aa15.9■□□□□ 0.14
CLN3-250ENST00000636839 ARPC1AQ92747 370 aa15.9■□□□□ 0.14
CLN3-250ENST00000636839 PHYHIPLQ96FC7 376 aa15.9■□□□□ 0.14
CLN3-250ENST00000636839 UQCC1Q9NVA1 299 aa15.9■□□□□ 0.14
CLN3-250ENST00000636839 SMCO3A2RU48 225 aa15.89■□□□□ 0.13
CLN3-250ENST00000636839 PRH1P02810 166 aa15.89■□□□□ 0.13
CLN3-250ENST00000636839 SPP1P10451 314 aa15.89■□□□□ 0.13
CLN3-250ENST00000636839 SLC25A24Q6NUK1 477 aa15.89■□□□□ 0.13
CLN3-250ENST00000636839 SLC7A5P1Q8MH63 180 aa15.89■□□□□ 0.13
CLN3-250ENST00000636839 TMEM147Q9BVK8 224 aa15.89■□□□□ 0.13
CLN3-250ENST00000636839 IFNA5P01569 189 aa15.89■□□□□ 0.13
CLN3-250ENST00000636839 FAM157CP0CG43 387 aa15.89■□□□□ 0.13
CLN3-250ENST00000636839 BPIFB3P59826 476 aa15.89■□□□□ 0.13
CLN3-250ENST00000636839 WDR61Q9GZS3 305 aaKnown RBP15.89■□□□□ 0.13
CLN3-250ENST00000636839 IGHV3-21A0A0B4J1V1 117 aa15.88■□□□□ 0.13
CLN3-250ENST00000636839 TEX46H3BTG2 121 aa15.88■□□□□ 0.13
CLN3-250ENST00000636839 HLA-DRB1P01911 266 aa15.88■□□□□ 0.13
CLN3-250ENST00000636839 EIF5AP63241 154 aaKnown RBP15.88■□□□□ 0.13
CLN3-250ENST00000636839 VWC2Q2TAL6 325 aa15.88■□□□□ 0.13
CLN3-250ENST00000636839 SPNS3Q6ZMD2 512 aa15.88■□□□□ 0.13
CLN3-250ENST00000636839 LFNGQ8NES3 379 aa15.88■□□□□ 0.13
CLN3-250ENST00000636839 FNDC4Q9H6D8 234 aaPredicted RBP15.88■□□□□ 0.13
CLN3-250ENST00000636839 YAE1D1Q9NRH1 226 aa15.88■□□□□ 0.13
CLN3-250ENST00000636839 MOB4Q9Y3A3 225 aa15.88■□□□□ 0.13
CLN3-250ENST00000636839 CD5LO43866 347 aa15.87■□□□□ 0.13
CLN3-250ENST00000636839 NMBP08949 121 aa15.87■□□□□ 0.13
CLN3-250ENST00000636839 IER3P46695 156 aa15.87■□□□□ 0.13
CLN3-250ENST00000636839 FHITP49789 147 aa15.87■□□□□ 0.13
CLN3-250ENST00000636839 Q6ZS46 218 aa15.87■□□□□ 0.13
CLN3-250ENST00000636839 OR2T6Q8NHC8 308 aa15.87■□□□□ 0.13
CLN3-250ENST00000636839 BLCAPP62952 87 aa15.87■□□□□ 0.13
CLN3-250ENST00000636839 ATP6V1FQ16864 119 aa15.87■□□□□ 0.13
CLN3-250ENST00000636839 C9orf139Q6ZV77 190 aa15.87■□□□□ 0.13
CLN3-250ENST00000636839 SCGB1C1Q8TD33 95 aa15.87■□□□□ 0.13
CLN3-250ENST00000636839 TAF15Q92804 592 aaKnown RBP eCLIP15.87■□□□□ 0.13
CLN3-250ENST00000636839 WNT10AQ9GZT5 417 aa15.87■□□□□ 0.13
CLN3-250ENST00000636839 PARP11Q9NR21 331 aa15.87■□□□□ 0.13
CLN3-250ENST00000636839 MRPL36Q9P0J6 103 aaKnown RBP15.87■□□□□ 0.13
CLN3-250ENST00000636839 MDKP21741 143 aaPredicted RBP15.86■□□□□ 0.13
CLN3-250ENST00000636839 FGF7P21781 194 aa15.86■□□□□ 0.13
CLN3-250ENST00000636839 TREML4Q6UXN2 200 aa15.86■□□□□ 0.13
CLN3-250ENST00000636839 TMEM182Q6ZP80 229 aaPredicted RBP15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms