RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 H0Y8X5 98 aa5.17□□□□□ -1.58
SCN1A-212ENST00000636194 FAM90A15PP0C7V4 464 aa5.17□□□□□ -1.58
SCN1A-212ENST00000636194 FAM90A14PP0C7W9 464 aa5.17□□□□□ -1.58
SCN1A-212ENST00000636194 PNLIPP16233 465 aa5.17□□□□□ -1.58
SCN1A-212ENST00000636194 BCDIN3DQ7Z5W3 292 aaKnown RBP5.17□□□□□ -1.58
SCN1A-212ENST00000636194 NEU4Q8WWR8 484 aaPredicted RBP5.17□□□□□ -1.58
SCN1A-212ENST00000636194 C5orf30Q96GV9 206 aa5.17□□□□□ -1.58
SCN1A-212ENST00000636194 LINC00615Q96LM1 132 aaPredicted RBP5.17□□□□□ -1.58
SCN1A-212ENST00000636194 PAPPA2Q9BXP8 1791 aa5.17□□□□□ -1.58
SCN1A-212ENST00000636194 TRAV25A0A0B4J276 109 aa5.17□□□□□ -1.58
SCN1A-212ENST00000636194 NDUFB4O95168 129 aa5.17□□□□□ -1.58
SCN1A-212ENST00000636194 ETHE1O95571 254 aa5.17□□□□□ -1.58
SCN1A-212ENST00000636194 PPBPP02775 128 aa5.17□□□□□ -1.58
SCN1A-212ENST00000636194 C1QTNF9P0C862 333 aa5.17□□□□□ -1.58
SCN1A-212ENST00000636194 TM4SF4P48230 202 aa5.17□□□□□ -1.58
SCN1A-212ENST00000636194 CCL8P80075 99 aa5.17□□□□□ -1.58
SCN1A-212ENST00000636194 C17orf99Q6UX52 265 aa5.17□□□□□ -1.58
SCN1A-212ENST00000636194 Q6ZSR9 355 aa5.17□□□□□ -1.58
SCN1A-212ENST00000636194 OR9G1Q8NH87 305 aa5.17□□□□□ -1.58
SCN1A-212ENST00000636194 OSR1Q8TAX0 266 aaPredicted RBP5.17□□□□□ -1.58
SCN1A-212ENST00000636194 GATA6Q92908 595 aa5.17□□□□□ -1.58
SCN1A-212ENST00000636194 PQLC2LA1A4F0 135 aa5.17□□□□□ -1.58
SCN1A-212ENST00000636194 PTP4A3O75365 173 aa5.17□□□□□ -1.58
SCN1A-212ENST00000636194 THBDP07204 575 aa5.17□□□□□ -1.58
SCN1A-212ENST00000636194 SRIP30626 198 aa5.17□□□□□ -1.58
SCN1A-212ENST00000636194 ERCC8Q13216 396 aa5.17□□□□□ -1.58
SCN1A-212ENST00000636194 FXYD3Q14802 87 aa5.17□□□□□ -1.58
SCN1A-212ENST00000636194 ZIC4Q8N9L1 334 aa5.17□□□□□ -1.58
SCN1A-212ENST00000636194 SMRP1Q8NCR6 262 aa5.17□□□□□ -1.58
SCN1A-212ENST00000636194 SSBP3Q9BWW4 388 aaPredicted RBP5.17□□□□□ -1.58
SCN1A-212ENST00000636194 SLIRPQ9GZT3 109 aaKnown RBP5.17□□□□□ -1.58
SCN1A-212ENST00000636194 ZMAT4Q9H898 229 aa5.17□□□□□ -1.58
SCN1A-212ENST00000636194 DLL3Q9NYJ7 618 aa5.17□□□□□ -1.58
SCN1A-212ENST00000636194 TINAGQ9UJW2 476 aa5.17□□□□□ -1.58
SCN1A-212ENST00000636194 C2CD3Q4AC94 2353 aa5.17□□□□□ -1.58
SCN1A-212ENST00000636194 PAPPAQ13219 1627 aa5.17□□□□□ -1.58
SCN1A-212ENST00000636194 CXorf51AA0A1B0GTR3 108 aa5.17□□□□□ -1.58
SCN1A-212ENST00000636194 GAGE12JA6NER3 117 aa5.17□□□□□ -1.58
SCN1A-212ENST00000636194 METTL12A8MUP2 240 aa5.17□□□□□ -1.58
SCN1A-212ENST00000636194 IGFBP2P18065 325 aa5.17□□□□□ -1.58
SCN1A-212ENST00000636194 GAGE1Q13065 139 aa5.17□□□□□ -1.58
SCN1A-212ENST00000636194 GAGE4Q13068 117 aa5.17□□□□□ -1.58
SCN1A-212ENST00000636194 GAGE5Q13069 117 aa5.17□□□□□ -1.58
SCN1A-212ENST00000636194 GAGE6Q13070 117 aa5.17□□□□□ -1.58
SCN1A-212ENST00000636194 IRF3Q14653 427 aa5.17□□□□□ -1.58
SCN1A-212ENST00000636194 C3orf56Q8N813 242 aa5.17□□□□□ -1.58
SCN1A-212ENST00000636194 TMEM174Q8WUU8 243 aa5.17□□□□□ -1.58
SCN1A-212ENST00000636194 ERG28Q9UKR5 140 aa5.17□□□□□ -1.58
SCN1A-212ENST00000636194 MYO9AB2RTY4 2548 aa5.17□□□□□ -1.58
SCN1A-212ENST00000636194 TMEM202A6NGA9 273 aa5.17□□□□□ -1.58
SCN1A-212ENST00000636194 ZNF98A6NK75 572 aa5.17□□□□□ -1.58
SCN1A-212ENST00000636194 AGAP20933 346 aa5.17□□□□□ -1.58
SCN1A-212ENST00000636194 C14orf132Q9NPU4 83 aa5.17□□□□□ -1.58
SCN1A-212ENST00000636194 CRLF1O75462 422 aa5.16□□□□□ -1.58
SCN1A-212ENST00000636194 MPV17P39210 176 aa5.16□□□□□ -1.58
SCN1A-212ENST00000636194 WDR38Q5JTN6 314 aa5.16□□□□□ -1.58
SCN1A-212ENST00000636194 MS4A3Q96HJ5 214 aa5.16□□□□□ -1.58
SCN1A-212ENST00000636194 C17orf77Q96MU5 243 aa5.16□□□□□ -1.58
SCN1A-212ENST00000636194 UBL5Q9BZL1 73 aa5.16□□□□□ -1.58
SCN1A-212ENST00000636194 OTORQ9NRC9 128 aa5.16□□□□□ -1.58
SCN1A-212ENST00000636194 TICRRQ7Z2Z1 1910 aa5.16□□□□□ -1.58
SCN1A-212ENST00000636194 SPTY2D1-AS1A0A0U1RR47 76 aa5.16□□□□□ -1.58
SCN1A-212ENST00000636194 IL20Q9NYY1 176 aa5.16□□□□□ -1.58
SCN1A-212ENST00000636194 TRAV24A0A0B4J272 114 aa5.16□□□□□ -1.58
SCN1A-212ENST00000636194 TM4SF5O14894 197 aa5.16□□□□□ -1.58
SCN1A-212ENST00000636194 C6orf226Q5I0X4 101 aa5.16□□□□□ -1.58
SCN1A-212ENST00000636194 WFDC9Q8NEX5 89 aa5.16□□□□□ -1.58
SCN1A-212ENST00000636194 ZNF479Q96JC4 524 aa5.16□□□□□ -1.58
SCN1A-212ENST00000636194 AURKAIP1Q9NWT8 199 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-212ENST00000636194 KDM3BQ7LBC6 1761 aa5.16□□□□□ -1.58
SCN1A-212ENST00000636194 F2Z2F3 143 aa5.16□□□□□ -1.58
SCN1A-212ENST00000636194 SOCS3O14543 225 aa5.16□□□□□ -1.58
SCN1A-212ENST00000636194 CD160O95971 181 aa5.16□□□□□ -1.58
SCN1A-212ENST00000636194 FAM214BQ7L5A3 538 aa5.16□□□□□ -1.58
SCN1A-212ENST00000636194 CYB561D1Q8N8Q1 229 aa5.16□□□□□ -1.58
SCN1A-212ENST00000636194 RPP21Q9H633 154 aaKnown RBP5.16□□□□□ -1.58
SCN1A-212ENST00000636194 EPDR1Q9UM22 224 aa5.16□□□□□ -1.58
SCN1A-212ENST00000636194 ZNF257Q9Y2Q1 563 aa5.16□□□□□ -1.58
SCN1A-212ENST00000636194 LCTP09848 1927 aa5.16□□□□□ -1.58
SCN1A-212ENST00000636194 MARCH11A6NNE9 402 aa5.16□□□□□ -1.58
SCN1A-212ENST00000636194 RPL36A-HNRNPH2H7BZ11 118 aa5.16□□□□□ -1.58
SCN1A-212ENST00000636194 HYAL3O43820 417 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-212ENST00000636194 TSPO2Q5TGU0 170 aa5.16□□□□□ -1.58
SCN1A-212ENST00000636194 ATOH7Q8N100 152 aa5.16□□□□□ -1.58
SCN1A-212ENST00000636194 ZNF488Q96MN9 340 aa5.16□□□□□ -1.58
SCN1A-212ENST00000636194 SMIM2Q9BVW6 85 aa5.16□□□□□ -1.58
SCN1A-212ENST00000636194 A0A0A6YYD5 115 aa5.16□□□□□ -1.58
SCN1A-212ENST00000636194 DDA1Q9BW61 102 aa5.16□□□□□ -1.58
SCN1A-212ENST00000636194 CFHR5Q9BXR6 569 aa5.16□□□□□ -1.58
SCN1A-212ENST00000636194 KCNE3Q9Y6H6 103 aa5.16□□□□□ -1.58
SCN1A-212ENST00000636194 IGHV1-69-2A0A0G2JMI3 117 aa5.16□□□□□ -1.58
SCN1A-212ENST00000636194 ZFPL1O95159 310 aa5.16□□□□□ -1.58
SCN1A-212ENST00000636194 DSCR9P59020 149 aa5.16□□□□□ -1.58
SCN1A-212ENST00000636194 EWSR1Q01844 656 aaKnown RBP eCLIP5.16□□□□□ -1.58
SCN1A-212ENST00000636194 DMRTA1Q5VZB9 504 aa5.16□□□□□ -1.58
SCN1A-212ENST00000636194 LINC00305Q7Z4B0 112 aa5.16□□□□□ -1.58
SCN1A-212ENST00000636194 PRR14Q9BWN1 585 aa5.16□□□□□ -1.58
SCN1A-212ENST00000636194 A0A0U1RQV5 110 aa5.15□□□□□ -1.58
SCN1A-212ENST00000636194 MRPL55Q7Z7F7 128 aaKnown RBP5.15□□□□□ -1.58
SCN1A-212ENST00000636194 RHOVQ96L33 236 aa5.15□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 95.6 ms