RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 KIR2DL5AQ8N109 375 aa9.2□□□□□ -0.94
CLN3-244ENST00000636147 OR1L4Q8NGR5 311 aa9.2□□□□□ -0.94
CLN3-244ENST00000636147 C11orf1Q9H5F2 150 aa9.2□□□□□ -0.94
CLN3-244ENST00000636147 SH3BGRL2Q9UJC5 107 aa9.2□□□□□ -0.94
CLN3-244ENST00000636147 ADAMTS9Q9P2N4 1935 aa9.2□□□□□ -0.94
CLN3-244ENST00000636147 CREBBPQ92793 2442 aa9.2□□□□□ -0.94
CLN3-244ENST00000636147 MYOD1P15172 320 aa9.2□□□□□ -0.94
CLN3-244ENST00000636147 MPV17P39210 176 aa9.2□□□□□ -0.94
CLN3-244ENST00000636147 FOXF2Q12947 444 aa9.2□□□□□ -0.94
CLN3-244ENST00000636147 SAPCD1Q5SSQ6 148 aa9.2□□□□□ -0.94
CLN3-244ENST00000636147 Q6ZS49 121 aa9.2□□□□□ -0.94
CLN3-244ENST00000636147 BPIFA4PQ86YQ2 179 aa9.2□□□□□ -0.94
CLN3-244ENST00000636147 MUC15Q8N387 334 aa9.2□□□□□ -0.94
CLN3-244ENST00000636147 MGST2Q99735 147 aa9.2□□□□□ -0.94
CLN3-244ENST00000636147 TMEM70Q9BUB7 260 aa9.2□□□□□ -0.94
CLN3-244ENST00000636147 ACACAQ13085 2346 aa9.2□□□□□ -0.94
CLN3-244ENST00000636147 TMSB15BA0A087X1C1 80 aa9.19□□□□□ -0.94
CLN3-244ENST00000636147 LOC389332A0A1B0GUA5 103 aa9.19□□□□□ -0.94
CLN3-244ENST00000636147 M0QZ24 198 aa9.19□□□□□ -0.94
CLN3-244ENST00000636147 C8orf88P0DMB2 117 aa9.19□□□□□ -0.94
CLN3-244ENST00000636147 FAM201AQ5SY85 155 aa9.19□□□□□ -0.94
CLN3-244ENST00000636147 C10orf113Q5VZT2 155 aa9.19□□□□□ -0.94
CLN3-244ENST00000636147 MED12LQ86YW9 2145 aa9.19□□□□□ -0.94
CLN3-244ENST00000636147 A0A1W2PRD5 423 aa9.19□□□□□ -0.94
CLN3-244ENST00000636147 A0A1W2PRF3 423 aa9.19□□□□□ -0.94
CLN3-244ENST00000636147 A0A1W2PRM7 423 aa9.19□□□□□ -0.94
CLN3-244ENST00000636147 PGPA6NDG6 321 aa9.19□□□□□ -0.94
CLN3-244ENST00000636147 KLF7O75840 302 aaPredicted RBP9.19□□□□□ -0.94
CLN3-244ENST00000636147 RPL15P61313 204 aaKnown RBP9.19□□□□□ -0.94
CLN3-244ENST00000636147 TPTE2P1Q5T6R2 138 aa9.19□□□□□ -0.94
CLN3-244ENST00000636147 GTF2H5Q6ZYL4 71 aa9.19□□□□□ -0.94
CLN3-244ENST00000636147 PPP1R32Q7Z5V6 425 aa9.19□□□□□ -0.94
CLN3-244ENST00000636147 LHFPL4Q7Z7J7 247 aa9.19□□□□□ -0.94
CLN3-244ENST00000636147 LINC00479Q96M42 142 aa9.19□□□□□ -0.94
CLN3-244ENST00000636147 ZNF703Q9H7S9 590 aaPredicted RBP9.19□□□□□ -0.94
CLN3-244ENST00000636147 TSPOP30536 169 aa9.19□□□□□ -0.94
CLN3-244ENST00000636147 CA7P43166 264 aa9.19□□□□□ -0.94
CLN3-244ENST00000636147 PRRX1P54821 245 aa9.19□□□□□ -0.94
CLN3-244ENST00000636147 TNXAQ16473 311 aa9.19□□□□□ -0.94
CLN3-244ENST00000636147 MPV17L2Q567V2 206 aa9.19□□□□□ -0.94
CLN3-244ENST00000636147 TMEM178AQ8NBL3 297 aa9.19□□□□□ -0.94
CLN3-244ENST00000636147 CLEC7AQ9BXN2 247 aa9.19□□□□□ -0.94
CLN3-244ENST00000636147 GNB1LQ9BYB4 327 aa9.19□□□□□ -0.94
CLN3-244ENST00000636147 FGF23Q9GZV9 251 aaPredicted RBP9.19□□□□□ -0.94
CLN3-244ENST00000636147 COMPP49747 757 aaPredicted RBP9.18□□□□□ -0.94
CLN3-244ENST00000636147 LHX2P50458 406 aa9.18□□□□□ -0.94
CLN3-244ENST00000636147 LOXL4Q96JB6 756 aa9.18□□□□□ -0.94
CLN3-244ENST00000636147 HARBI1Q96MB7 349 aa9.18□□□□□ -0.94
CLN3-244ENST00000636147 NAA38Q9BRA0 125 aaKnown RBP9.18□□□□□ -0.94
CLN3-244ENST00000636147 METRNQ9UJH8 293 aa9.18□□□□□ -0.94
CLN3-244ENST00000636147 CDC42EP3Q9UKI2 254 aa9.18□□□□□ -0.94
CLN3-244ENST00000636147 TRAV9-2A0A087WT02 112 aa9.18□□□□□ -0.94
CLN3-244ENST00000636147 A0A1W2PS18 150 aa9.18□□□□□ -0.94
CLN3-244ENST00000636147 SRSF7Q16629 238 aaKnown RBP eCLIP9.18□□□□□ -0.94
CLN3-244ENST00000636147 C12orf54Q6X4T0 127 aa9.18□□□□□ -0.94
CLN3-244ENST00000636147 TCF24Q7RTU0 167 aa9.18□□□□□ -0.94
CLN3-244ENST00000636147 SAP25Q8TEE9 199 aa9.18□□□□□ -0.94
CLN3-244ENST00000636147 FER1L6-AS2Q96M78 137 aa9.18□□□□□ -0.94
CLN3-244ENST00000636147 RCHY1Q96PM5 261 aa9.18□□□□□ -0.94
CLN3-244ENST00000636147 HIGD1CA8MV81 97 aa9.18□□□□□ -0.94
CLN3-244ENST00000636147 IGLC2P0DOY2 106 aa9.18□□□□□ -0.94
CLN3-244ENST00000636147 IGLC3P0DOY3 106 aa9.18□□□□□ -0.94
CLN3-244ENST00000636147 ARL3P36405 182 aa9.18□□□□□ -0.94
CLN3-244ENST00000636147 SCGB2A2Q13296 93 aa9.18□□□□□ -0.94
CLN3-244ENST00000636147 UBE2V1Q13404 147 aa9.18□□□□□ -0.94
CLN3-244ENST00000636147 SLC35E4Q6ICL7 350 aa9.18□□□□□ -0.94
CLN3-244ENST00000636147 Q6P435 159 aa9.18□□□□□ -0.94
CLN3-244ENST00000636147 NIT1Q86X76 327 aa9.18□□□□□ -0.94
CLN3-244ENST00000636147 DNASE2BQ8WZ79 361 aa9.18□□□□□ -0.94
CLN3-244ENST00000636147 YLPM1P49750 1951 aaKnown RBP9.17□□□□□ -0.94
CLN3-244ENST00000636147 TRAV5A0A0B4J249 113 aa9.17□□□□□ -0.94
CLN3-244ENST00000636147 ZNF503-AS2A6NEH8 195 aa9.17□□□□□ -0.94
CLN3-244ENST00000636147 CT45A10P0DMU9 189 aa9.17□□□□□ -0.94
CLN3-244ENST00000636147 LGALS4P56470 323 aa9.17□□□□□ -0.94
CLN3-244ENST00000636147 AMMECR1LQ6DCA0 310 aa9.17□□□□□ -0.94
CLN3-244ENST00000636147 MOB3BQ86TA1 216 aa9.17□□□□□ -0.94
CLN3-244ENST00000636147 MAFAQ8NHW3 353 aaPredicted RBP9.17□□□□□ -0.94
CLN3-244ENST00000636147 PRNDQ9UKY0 176 aa9.17□□□□□ -0.94
CLN3-244ENST00000636147 TRBV20OR9-2A0A075B6H5 130 aa9.17□□□□□ -0.94
CLN3-244ENST00000636147 PYYP10082 97 aa9.17□□□□□ -0.94
CLN3-244ENST00000636147 PPOXP50336 477 aa9.17□□□□□ -0.94
CLN3-244ENST00000636147 PDLIM4P50479 330 aa9.17□□□□□ -0.94
CLN3-244ENST00000636147 TMEM177Q53S58 311 aa9.17□□□□□ -0.94
CLN3-244ENST00000636147 VWA1Q6PCB0 445 aa9.17□□□□□ -0.94
CLN3-244ENST00000636147 OR9G1Q8NH87 305 aa9.17□□□□□ -0.94
CLN3-244ENST00000636147 RNASE8Q8TDE3 154 aaKnown RBP9.17□□□□□ -0.94
CLN3-244ENST00000636147 PROK2Q9HC23 129 aa9.17□□□□□ -0.94
CLN3-244ENST00000636147 CUL9Q8IWT3 2517 aa9.17□□□□□ -0.94
CLN3-244ENST00000636147 hDV102S1A0JD36 115 aa9.17□□□□□ -0.94
CLN3-244ENST00000636147 SH2D7A6NKC9 451 aaPredicted RBP9.17□□□□□ -0.94
CLN3-244ENST00000636147 PPIAL4DF5H284 164 aa9.17□□□□□ -0.94
CLN3-244ENST00000636147 TMPRSS2O15393 492 aa9.17□□□□□ -0.94
CLN3-244ENST00000636147 REG1AP05451 166 aa9.17□□□□□ -0.94
CLN3-244ENST00000636147 RIPPLY3P57055 190 aa9.17□□□□□ -0.94
CLN3-244ENST00000636147 MLANAQ16655 118 aa9.17□□□□□ -0.94
CLN3-244ENST00000636147 HCP5Q6MZN7 132 aa9.17□□□□□ -0.94
CLN3-244ENST00000636147 TEX43Q6ZNM6 134 aa9.17□□□□□ -0.94
CLN3-244ENST00000636147 NPIPB3Q92617 1050 aa9.17□□□□□ -0.94
CLN3-244ENST00000636147 A8MWL6 223 aa9.16□□□□□ -0.94
CLN3-244ENST00000636147 YPEL3P61236 119 aaPredicted RBP9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 94.4 ms