RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 DEFA3P59666 94 aa14.01□□□□□ -0.17
CLN3-239ENST00000628023 PRCDQ00LT1 54 aa14.01□□□□□ -0.17
CLN3-239ENST00000628023 ATP5G2Q06055 141 aa14.01□□□□□ -0.17
CLN3-239ENST00000628023 WT1-ASQ06250 92 aa14.01□□□□□ -0.17
CLN3-239ENST00000628023 ANKRD55Q3KP44 614 aa14.01□□□□□ -0.17
CLN3-239ENST00000628023 SPINK9Q5DT21 86 aa14.01□□□□□ -0.17
CLN3-239ENST00000628023 ETV3LQ6ZN32 361 aa14.01□□□□□ -0.17
CLN3-239ENST00000628023 LYZL2Q7Z4W2 148 aa14.01□□□□□ -0.17
CLN3-239ENST00000628023 NECAP1Q8NC96 275 aa14.01□□□□□ -0.17
CLN3-239ENST00000628023 OR11H1Q8NG94 326 aa14.01□□□□□ -0.17
CLN3-239ENST00000628023 DPF1Q92782 380 aa14.01□□□□□ -0.17
CLN3-239ENST00000628023 ENY2Q9NPA8 101 aa14.01□□□□□ -0.17
CLN3-239ENST00000628023 CTNNBIP1Q9NSA3 81 aaPredicted RBP14.01□□□□□ -0.17
CLN3-239ENST00000628023 NUDT15Q9NV35 164 aa14.01□□□□□ -0.17
CLN3-239ENST00000628023 DUXBA0A1W2PPF3 345 aa14□□□□□ -0.17
CLN3-239ENST00000628023 C9orf170A2RU37 121 aa14□□□□□ -0.17
CLN3-239ENST00000628023 I3L521 148 aa14□□□□□ -0.17
CLN3-239ENST00000628023 SULT1A3P0DMM9 295 aa14□□□□□ -0.17
CLN3-239ENST00000628023 SULT1A4P0DMN0 295 aa14□□□□□ -0.17
CLN3-239ENST00000628023 HIST1H1BP16401 226 aaKnown RBP14□□□□□ -0.17
CLN3-239ENST00000628023 RUNX1Q01196 453 aa14□□□□□ -0.17
CLN3-239ENST00000628023 OR1N2Q8NGR9 330 aa14□□□□□ -0.17
CLN3-239ENST00000628023 COQ8AQ8NI60 647 aa14□□□□□ -0.17
CLN3-239ENST00000628023 FBXL7Q9UJT9 491 aa14□□□□□ -0.17
CLN3-239ENST00000628023 TRBV9A0A0B4J1U6 114 aa13.99□□□□□ -0.17
CLN3-239ENST00000628023 PRB2P02812 416 aaPredicted RBP13.99□□□□□ -0.17
CLN3-239ENST00000628023 ERHP84090 104 aaKnown RBP13.99□□□□□ -0.17
CLN3-239ENST00000628023 ZNF616Q08AN1 781 aa13.99□□□□□ -0.17
CLN3-239ENST00000628023 DHRS2Q13268 280 aa13.99□□□□□ -0.17
CLN3-239ENST00000628023 EXOSC2Q13868 293 aaKnown RBP13.99□□□□□ -0.17
CLN3-239ENST00000628023 C15orf32Q32M92 178 aa13.99□□□□□ -0.17
CLN3-239ENST00000628023 OXLD1Q5BKU9 147 aa13.99□□□□□ -0.17
CLN3-239ENST00000628023 Q6ZRM9 215 aa13.99□□□□□ -0.17
CLN3-239ENST00000628023 LYG2Q86SG7 212 aa13.99□□□□□ -0.17
CLN3-239ENST00000628023 MRAPQ8TCY5 172 aa13.99□□□□□ -0.17
CLN3-239ENST00000628023 P2RX4Q99571 388 aa13.99□□□□□ -0.17
CLN3-239ENST00000628023 THYN1Q9P016 225 aa13.99□□□□□ -0.17
CLN3-239ENST00000628023 ANKRD34BA5PLL1 514 aa13.98□□□□□ -0.17
CLN3-239ENST00000628023 LINC01619G3V211 115 aa13.98□□□□□ -0.17
CLN3-239ENST00000628023 NXPH3O95157 252 aa13.98□□□□□ -0.17
CLN3-239ENST00000628023 H2AFB2P0C5Z0 115 aa13.98□□□□□ -0.17
CLN3-239ENST00000628023 OR8U8P0C7N1 319 aa13.98□□□□□ -0.17
CLN3-239ENST00000628023 IFITM3Q01628 133 aa13.98□□□□□ -0.17
CLN3-239ENST00000628023 SMCO1Q147U7 214 aa13.98□□□□□ -0.17
CLN3-239ENST00000628023 NMSQ5H8A3 153 aa13.98□□□□□ -0.17
CLN3-239ENST00000628023 SLC25A24Q6NUK1 477 aa13.98□□□□□ -0.17
CLN3-239ENST00000628023 LINC00482Q8N8I6 264 aa13.98□□□□□ -0.17
CLN3-239ENST00000628023 LRTM2Q8N967 370 aa13.98□□□□□ -0.17
CLN3-239ENST00000628023 CACFD1Q9UGQ2 172 aa13.98□□□□□ -0.17
CLN3-239ENST00000628023 F11RQ9Y624 299 aaKnown RBP13.98□□□□□ -0.17
CLN3-239ENST00000628023 IGLV11-55A0A075B6I3 123 aa13.97□□□□□ -0.17
CLN3-239ENST00000628023 IGHV4OR15-8A0A075B7B6 117 aa13.97□□□□□ -0.17
CLN3-239ENST00000628023 A0A087WW49 117 aa13.97□□□□□ -0.17
CLN3-239ENST00000628023 HSPB1P04792 205 aaKnown RBP13.97□□□□□ -0.17
CLN3-239ENST00000628023 HOXB5P09067 269 aa13.97□□□□□ -0.17
CLN3-239ENST00000628023 SPCS3P61009 180 aa13.97□□□□□ -0.17
CLN3-239ENST00000628023 OR2C3Q8N628 320 aa13.97□□□□□ -0.17
CLN3-239ENST00000628023 OR1L6Q8NGR2 347 aa13.97□□□□□ -0.17
CLN3-239ENST00000628023 OR1S1Q8NH92 325 aa13.97□□□□□ -0.17
CLN3-239ENST00000628023 FANCD2OSQ96PS1 177 aa13.97□□□□□ -0.17
CLN3-239ENST00000628023 TMED3Q9Y3Q3 217 aa13.97□□□□□ -0.17
CLN3-239ENST00000628023 CEBPZOSA8MTT3 80 aa13.96□□□□□ -0.17
CLN3-239ENST00000628023 NDUFB8O95169 186 aa13.96□□□□□ -0.17
CLN3-239ENST00000628023 DUS4LO95620 317 aaKnown RBP13.96□□□□□ -0.17
CLN3-239ENST00000628023 SNCAP37840 140 aa13.96□□□□□ -0.17
CLN3-239ENST00000628023 FHL3Q13643 280 aa13.96□□□□□ -0.17
CLN3-239ENST00000628023 ZNF343Q6P1L6 599 aa13.96□□□□□ -0.17
CLN3-239ENST00000628023 OR52B4Q8NGK2 314 aa13.96□□□□□ -0.17
CLN3-239ENST00000628023 OR52E5Q8NH55 327 aa13.96□□□□□ -0.17
CLN3-239ENST00000628023 EEF1AKMT3Q96AZ1 226 aa13.96□□□□□ -0.17
CLN3-239ENST00000628023 RANGRFQ9HD47 186 aaPredicted RBP13.96□□□□□ -0.17
CLN3-239ENST00000628023 PEF1Q9UBV8 284 aaKnown RBP13.96□□□□□ -0.17
CLN3-239ENST00000628023 A0A1B0GU03 582 aa13.95□□□□□ -0.18
CLN3-239ENST00000628023 IGHV3-23P01764 117 aa13.95□□□□□ -0.18
CLN3-239ENST00000628023 OR1P1Q8NH06 330 aa13.95□□□□□ -0.18
CLN3-239ENST00000628023 CXorf58Q96LI9 332 aa13.95□□□□□ -0.18
CLN3-239ENST00000628023 S4R3C0 116 aa13.95□□□□□ -0.18
CLN3-239ENST00000628023 IFNA21P01568 189 aa13.94□□□□□ -0.18
CLN3-239ENST00000628023 ZP3P21754 424 aa13.94□□□□□ -0.18
CLN3-239ENST00000628023 SUB1P53999 127 aaKnown RBP eCLIP13.94□□□□□ -0.18
CLN3-239ENST00000628023 SLURP1P55000 103 aa13.94□□□□□ -0.18
CLN3-239ENST00000628023 AARDQ4LEZ3 155 aa13.94□□□□□ -0.18
CLN3-239ENST00000628023 FAM209BQ5JX69 171 aa13.94□□□□□ -0.18
CLN3-239ENST00000628023 NRARPQ7Z6K4 114 aa13.94□□□□□ -0.18
CLN3-239ENST00000628023 ZNF114Q8NC26 417 aa13.94□□□□□ -0.18
CLN3-239ENST00000628023 MISP3Q96FF7 219 aa13.94□□□□□ -0.18
CLN3-239ENST00000628023 RCC1LQ96I51 464 aaKnown RBP13.94□□□□□ -0.18
CLN3-239ENST00000628023 HEYLQ9NQ87 328 aaPredicted RBP13.94□□□□□ -0.18
CLN3-239ENST00000628023 DMRT1Q9Y5R6 373 aa13.94□□□□□ -0.18
CLN3-239ENST00000628023 MFSD2BA6NFX1 497 aa13.93□□□□□ -0.18
CLN3-239ENST00000628023 TRBV12-3P01733 135 aa13.93□□□□□ -0.18
CLN3-239ENST00000628023 TNFRSF9Q07011 255 aa13.93□□□□□ -0.18
CLN3-239ENST00000628023 KLK9Q2XQG4 91 aa13.93□□□□□ -0.18
CLN3-239ENST00000628023 GGNBP1Q5YKI7 109 aa13.93□□□□□ -0.18
CLN3-239ENST00000628023 PLET1Q6UQ28 207 aa13.93□□□□□ -0.18
CLN3-239ENST00000628023 WFDC9Q8NEX5 89 aa13.93□□□□□ -0.18
CLN3-239ENST00000628023 SEC22CQ9BRL7 303 aa13.93□□□□□ -0.18
CLN3-239ENST00000628023 MCRIP2Q9BUT9 160 aaKnown RBP13.93□□□□□ -0.18
CLN3-239ENST00000628023 AURKAIP1Q9NWT8 199 aaPredicted RBP13.93□□□□□ -0.18
CLN3-239ENST00000628023 KLK9Q9UKQ9 250 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms