RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 H0YJW9 148 aa17.31■□□□□ 0.36
LIME1-210ENST00000621325 UPK2O00526 184 aa17.31■□□□□ 0.36
LIME1-210ENST00000621325 SAA1P0DJI8 122 aaPredicted RBP17.31■□□□□ 0.36
LIME1-210ENST00000621325 TMEM204Q9BSN7 226 aa17.31■□□□□ 0.36
LIME1-210ENST00000621325 GCSAMLQ5JQS6 135 aa17.3■□□□□ 0.36
LIME1-210ENST00000621325 HRNRQ86YZ3 2850 aaPredicted RBP17.3■□□□□ 0.36
LIME1-210ENST00000621325 H3BQ15 152 aa17.3■□□□□ 0.36
LIME1-210ENST00000621325 TREML4Q6UXN2 200 aa17.3■□□□□ 0.36
LIME1-210ENST00000621325 OR5AN1Q8NGI8 311 aa17.3■□□□□ 0.36
LIME1-210ENST00000621325 PRORYQ9H606 182 aa17.3■□□□□ 0.36
LIME1-210ENST00000621325 CA2P00918 260 aa17.29■□□□□ 0.36
LIME1-210ENST00000621325 IGHV1-8P0DP01 117 aa17.29■□□□□ 0.36
LIME1-210ENST00000621325 GAGE1Q13065 139 aa17.29■□□□□ 0.36
LIME1-210ENST00000621325 CLEC2AQ6UVW9 174 aa17.29■□□□□ 0.36
LIME1-210ENST00000621325 SLC24A4Q8NFF2 622 aa17.29■□□□□ 0.36
LIME1-210ENST00000621325 GZMBP10144 247 aa17.29■□□□□ 0.36
LIME1-210ENST00000621325 PRNDQ9UKY0 176 aa17.29■□□□□ 0.36
LIME1-210ENST00000621325 NPY1RP25929 384 aa17.28■□□□□ 0.36
LIME1-210ENST00000621325 RAB11AP62491 216 aa17.28■□□□□ 0.36
LIME1-210ENST00000621325 ZNF841Q6ZN19 808 aa17.28■□□□□ 0.36
LIME1-210ENST00000621325 ST6GALNAC6Q969X2 333 aa17.28■□□□□ 0.36
LIME1-210ENST00000621325 C1orf159Q96HA4 380 aa17.28■□□□□ 0.36
LIME1-210ENST00000621325 HARBI1Q96MB7 349 aa17.28■□□□□ 0.36
LIME1-210ENST00000621325 KBTBD11O94819 623 aa17.28■□□□□ 0.36
LIME1-210ENST00000621325 APOA2P02652 100 aa17.28■□□□□ 0.36
LIME1-210ENST00000621325 ZNF343Q6P1L6 599 aa17.28■□□□□ 0.36
LIME1-210ENST00000621325 ZNF596Q8TC21 504 aa17.28■□□□□ 0.36
LIME1-210ENST00000621325 HIST1H2BLQ99880 126 aa17.28■□□□□ 0.36
LIME1-210ENST00000621325 NABP2Q9BQ15 211 aa17.28■□□□□ 0.36
LIME1-210ENST00000621325 ENY2Q9NPA8 101 aa17.28■□□□□ 0.36
LIME1-210ENST00000621325 CBLN4Q9NTU7 201 aa17.28■□□□□ 0.36
LIME1-210ENST00000621325 CTXND1A0A1B0GTU2 59 aa17.27■□□□□ 0.36
LIME1-210ENST00000621325 C17orf112F2Z3M2 114 aa17.27■□□□□ 0.36
LIME1-210ENST00000621325 CXCL1P09341 107 aa17.27■□□□□ 0.36
LIME1-210ENST00000621325 RBX1P62877 108 aa17.27■□□□□ 0.36
LIME1-210ENST00000621325 RHEBQ15382 184 aa17.27■□□□□ 0.36
LIME1-210ENST00000621325 ARSJQ5FYB0 599 aaPredicted RBP17.27■□□□□ 0.36
LIME1-210ENST00000621325 LINC00311Q8N616 119 aa17.27■□□□□ 0.36
LIME1-210ENST00000621325 MGST2Q99735 147 aa17.27■□□□□ 0.36
LIME1-210ENST00000621325 RALYQ9UKM9 306 aaKnown RBP17.27■□□□□ 0.36
LIME1-210ENST00000621325 ELOA3CA0A087WX78 387 aaPredicted RBP17.27■□□□□ 0.35
LIME1-210ENST00000621325 TEX50A0A1B0GTY4 177 aa17.27■□□□□ 0.35
LIME1-210ENST00000621325 M0R143 59 aa17.27■□□□□ 0.35
LIME1-210ENST00000621325 OR9G1Q8NH87 305 aa17.27■□□□□ 0.35
LIME1-210ENST00000621325 GATAD1Q8WUU5 269 aa17.27■□□□□ 0.35
LIME1-210ENST00000621325 RAB39BQ96DA2 213 aa17.27■□□□□ 0.35
LIME1-210ENST00000621325 ZNF727A8MUV8 499 aa17.26■□□□□ 0.35
LIME1-210ENST00000621325 PRCDQ00LT1 54 aa17.26■□□□□ 0.35
LIME1-210ENST00000621325 FAM90A2PQ658T7 463 aa17.26■□□□□ 0.35
LIME1-210ENST00000621325 OSR1Q8TAX0 266 aaPredicted RBP17.26■□□□□ 0.35
LIME1-210ENST00000621325 BET1LQ9NYM9 111 aa17.26■□□□□ 0.35
LIME1-210ENST00000621325 DLK1P80370 383 aa17.26■□□□□ 0.35
LIME1-210ENST00000621325 C8orf31Q8N9H6 132 aa17.26■□□□□ 0.35
LIME1-210ENST00000621325 TMEM186Q96B77 213 aa17.26■□□□□ 0.35
LIME1-210ENST00000621325 ACTR3CQ9C0K3 210 aaPredicted RBP17.26■□□□□ 0.35
LIME1-210ENST00000621325 PLEKHA3Q9HB20 300 aa17.26■□□□□ 0.35
LIME1-210ENST00000621325 ZNF257Q9Y2Q1 563 aa17.26■□□□□ 0.35
LIME1-210ENST00000621325 TRGC2P03986 189 aa17.25■□□□□ 0.35
LIME1-210ENST00000621325 PPOXP50336 477 aa17.25■□□□□ 0.35
LIME1-210ENST00000621325 JOSD1Q15040 202 aaPredicted RBP17.25■□□□□ 0.35
LIME1-210ENST00000621325 OR10W1Q8NGF6 305 aa17.25■□□□□ 0.35
LIME1-210ENST00000621325 FLYWCH2Q96CP2 140 aaKnown RBP17.25■□□□□ 0.35
LIME1-210ENST00000621325 TMEM133Q9H2Q1 129 aa17.25■□□□□ 0.35
LIME1-210ENST00000621325 VAX2Q9UIW0 290 aa17.25■□□□□ 0.35
LIME1-210ENST00000621325 ZNF705GA8MUZ8 300 aaPredicted RBP17.25■□□□□ 0.35
LIME1-210ENST00000621325 TMEM177Q53S58 311 aa17.25■□□□□ 0.35
LIME1-210ENST00000621325 MIC13Q5XKP0 118 aa17.25■□□□□ 0.35
LIME1-210ENST00000621325 Q8WTZ3 238 aa17.24■□□□□ 0.35
LIME1-210ENST00000621325 FAM122AQ96E09 287 aa17.24■□□□□ 0.35
LIME1-210ENST00000621325 RITA1Q96K30 269 aa17.24■□□□□ 0.35
LIME1-210ENST00000621325 GGTLC1Q9BX51 225 aa17.24■□□□□ 0.35
LIME1-210ENST00000621325 PATZ1Q9HBE1 687 aaKnown RBP17.24■□□□□ 0.35
LIME1-210ENST00000621325 URGCP-MRPS24S4R325 110 aa17.24■□□□□ 0.35
LIME1-210ENST00000621325 PKD1L2Q7Z442 2459 aa17.24■□□□□ 0.35
LIME1-210ENST00000621325 ACOT6Q3I5F7 207 aaPredicted RBP17.23■□□□□ 0.35
LIME1-210ENST00000621325 RNASE8Q8TDE3 154 aaKnown RBP17.23■□□□□ 0.35
LIME1-210ENST00000621325 SSMEM1Q8WWF3 244 aa17.23■□□□□ 0.35
LIME1-210ENST00000621325 LSM4Q9Y4Z0 139 aaKnown RBP17.23■□□□□ 0.35
LIME1-210ENST00000621325 TACC2O95359 2948 aa17.23■□□□□ 0.35
LIME1-210ENST00000621325 IGHV3-72A0A0B4J1Y9 119 aa17.23■□□□□ 0.35
LIME1-210ENST00000621325 E7EUB6 86 aa17.23■□□□□ 0.35
LIME1-210ENST00000621325 ZNF137PP52743 207 aa17.23■□□□□ 0.35
LIME1-210ENST00000621325 MOB3BQ86TA1 216 aa17.23■□□□□ 0.35
LIME1-210ENST00000621325 NIPSNAP3BQ9BS92 247 aa17.23■□□□□ 0.35
LIME1-210ENST00000621325 CYB5BO43169 146 aa17.22■□□□□ 0.35
LIME1-210ENST00000621325 TRGC1P0CF51 173 aa17.22■□□□□ 0.35
LIME1-210ENST00000621325 CDC34P49427 236 aaPredicted RBP17.22■□□□□ 0.35
LIME1-210ENST00000621325 OR4C13Q8NGP0 309 aa17.22■□□□□ 0.35
LIME1-210ENST00000621325 DLL1O00548 723 aa17.22■□□□□ 0.35
LIME1-210ENST00000621325 MPDU1O75352 247 aa17.22■□□□□ 0.35
LIME1-210ENST00000621325 IFNA1P01562 189 aa17.22■□□□□ 0.35
LIME1-210ENST00000621325 FAM71F2Q6NXP2 309 aa17.22■□□□□ 0.35
LIME1-210ENST00000621325 ABHD5Q8WTS1 349 aa17.22■□□□□ 0.35
LIME1-210ENST00000621325 NPVFQ9HCQ7 196 aa17.22■□□□□ 0.35
LIME1-210ENST00000621325 PXMP4Q9Y6I8 212 aa17.22■□□□□ 0.35
LIME1-210ENST00000621325 A0A1W2PPR1 153 aa17.21■□□□□ 0.35
LIME1-210ENST00000621325 TCF21O43680 179 aa17.21■□□□□ 0.35
LIME1-210ENST00000621325 IGLV2-23P01705 113 aa17.21■□□□□ 0.35
LIME1-210ENST00000621325 TAGLN2P37802 199 aaKnown RBP17.21■□□□□ 0.35
LIME1-210ENST00000621325 OPRK1P41145 380 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms