RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 KLK9Q9UKQ9 250 aa12.8□□□□□ -0.36
CCDC28A-202ENST00000611852 NBEAL1Q6ZS30 2694 aa12.8□□□□□ -0.36
CCDC28A-202ENST00000611852 TRAV6A0A075B6T7 132 aa12.79□□□□□ -0.36
CCDC28A-202ENST00000611852 ST8SIA3O43173 380 aa12.79□□□□□ -0.36
CCDC28A-202ENST00000611852 DEFA4P12838 97 aa12.79□□□□□ -0.36
CCDC28A-202ENST00000611852 ANXA7P20073 488 aaKnown RBP12.79□□□□□ -0.36
CCDC28A-202ENST00000611852 TATDN3Q17R31 274 aa12.79□□□□□ -0.36
CCDC28A-202ENST00000611852 AARDQ4LEZ3 155 aa12.79□□□□□ -0.36
CCDC28A-202ENST00000611852 LRTM2Q8N967 370 aa12.79□□□□□ -0.36
CCDC28A-202ENST00000611852 NOTCH3Q9UM47 2321 aa12.79□□□□□ -0.36
CCDC28A-202ENST00000611852 IGLV11-55A0A075B6I3 123 aa12.78□□□□□ -0.36
CCDC28A-202ENST00000611852 C9orf170A2RU37 121 aa12.78□□□□□ -0.36
CCDC28A-202ENST00000611852 OR2J3O76001 311 aa12.78□□□□□ -0.36
CCDC28A-202ENST00000611852 H2AFB2P0C5Z0 115 aa12.78□□□□□ -0.36
CCDC28A-202ENST00000611852 OR4E1P0C645 316 aa12.78□□□□□ -0.36
CCDC28A-202ENST00000611852 ZNF616Q08AN1 781 aa12.78□□□□□ -0.36
CCDC28A-202ENST00000611852 NMSQ5H8A3 153 aa12.78□□□□□ -0.36
CCDC28A-202ENST00000611852 OR1N2Q8NGR9 330 aa12.78□□□□□ -0.36
CCDC28A-202ENST00000611852 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.78□□□□□ -0.36
CCDC28A-202ENST00000611852 CACNG5Q9UF02 275 aa12.78□□□□□ -0.36
CCDC28A-202ENST00000611852 FBXL7Q9UJT9 491 aa12.78□□□□□ -0.36
CCDC28A-202ENST00000611852 DMRT1Q9Y5R6 373 aa12.78□□□□□ -0.36
CCDC28A-202ENST00000611852 PIGBOS1A0A0B4J2F0 54 aa12.78□□□□□ -0.36
CCDC28A-202ENST00000611852 DUXBA0A1W2PPF3 345 aa12.78□□□□□ -0.36
CCDC28A-202ENST00000611852 IFNA17P01571 189 aa12.78□□□□□ -0.36
CCDC28A-202ENST00000611852 HLA-AP01891 365 aaKnown RBP12.78□□□□□ -0.36
CCDC28A-202ENST00000611852 HIST1H1BP16401 226 aaKnown RBP12.78□□□□□ -0.36
CCDC28A-202ENST00000611852 CD33P20138 364 aa12.78□□□□□ -0.36
CCDC28A-202ENST00000611852 MECP2P51608 486 aaKnown RBP12.78□□□□□ -0.36
CCDC28A-202ENST00000611852 RAB25P57735 213 aa12.78□□□□□ -0.36
CCDC28A-202ENST00000611852 ATP5G2Q06055 141 aa12.78□□□□□ -0.36
CCDC28A-202ENST00000611852 DHRS2Q13268 280 aa12.78□□□□□ -0.36
CCDC28A-202ENST00000611852 C15orf32Q32M92 178 aa12.78□□□□□ -0.36
CCDC28A-202ENST00000611852 SPINK9Q5DT21 86 aa12.78□□□□□ -0.36
CCDC28A-202ENST00000611852 ZNF343Q6P1L6 599 aa12.78□□□□□ -0.36
CCDC28A-202ENST00000611852 PPP1R14BQ96C90 147 aa12.78□□□□□ -0.36
CCDC28A-202ENST00000611852 PDCD10Q9BUL8 212 aa12.78□□□□□ -0.36
CCDC28A-202ENST00000611852 IGHV4OR15-8A0A075B7B6 117 aa12.77□□□□□ -0.37
CCDC28A-202ENST00000611852 A0A087WW49 117 aa12.77□□□□□ -0.37
CCDC28A-202ENST00000611852 NDUFB8O95169 186 aa12.77□□□□□ -0.37
CCDC28A-202ENST00000611852 LYG2Q86SG7 212 aa12.77□□□□□ -0.37
CCDC28A-202ENST00000611852 OR2C3Q8N628 320 aa12.77□□□□□ -0.37
CCDC28A-202ENST00000611852 DPF1Q92782 380 aa12.77□□□□□ -0.37
CCDC28A-202ENST00000611852 PLEKHA3Q9HB20 300 aa12.77□□□□□ -0.37
CCDC28A-202ENST00000611852 F11RQ9Y624 299 aaKnown RBP12.77□□□□□ -0.37
CCDC28A-202ENST00000611852 FBN3Q75N90 2809 aa12.76□□□□□ -0.37
CCDC28A-202ENST00000611852 INS-IGF2F8WCM5 200 aa12.76□□□□□ -0.37
CCDC28A-202ENST00000611852 LINC01619G3V211 115 aa12.76□□□□□ -0.37
CCDC28A-202ENST00000611852 PRAF2O60831 178 aa12.76□□□□□ -0.37
CCDC28A-202ENST00000611852 HSPB1P04792 205 aaKnown RBP12.76□□□□□ -0.37
CCDC28A-202ENST00000611852 OR8U8P0C7N1 319 aa12.76□□□□□ -0.37
CCDC28A-202ENST00000611852 SULT1A3P0DMM9 295 aa12.76□□□□□ -0.37
CCDC28A-202ENST00000611852 SULT1A4P0DMN0 295 aa12.76□□□□□ -0.37
CCDC28A-202ENST00000611852 MFAP2P55001 183 aa12.76□□□□□ -0.37
CCDC28A-202ENST00000611852 EXOSC2Q13868 293 aaKnown RBP12.76□□□□□ -0.37
CCDC28A-202ENST00000611852 C4orf46Q504U0 113 aa12.76□□□□□ -0.37
CCDC28A-202ENST00000611852 OR52E5Q8NH55 327 aa12.76□□□□□ -0.37
CCDC28A-202ENST00000611852 ALG5Q9Y673 324 aa12.76□□□□□ -0.37
CCDC28A-202ENST00000611852 ANKRD34BA5PLL1 514 aa12.75□□□□□ -0.37
CCDC28A-202ENST00000611852 DUS4LO95620 317 aaKnown RBP12.75□□□□□ -0.37
CCDC28A-202ENST00000611852 SPCS3P61009 180 aa12.75□□□□□ -0.37
CCDC28A-202ENST00000611852 SMCO1Q147U7 214 aa12.75□□□□□ -0.37
CCDC28A-202ENST00000611852 PDLIM3Q53GG5 364 aaPredicted RBP12.75□□□□□ -0.37
CCDC28A-202ENST00000611852 ZNF114Q8NC26 417 aa12.75□□□□□ -0.37
CCDC28A-202ENST00000611852 CHAC2Q8WUX2 184 aa12.75□□□□□ -0.37
CCDC28A-202ENST00000611852 RANGRFQ9HD47 186 aaPredicted RBP12.75□□□□□ -0.37
CCDC28A-202ENST00000611852 PEF1Q9UBV8 284 aaKnown RBP12.75□□□□□ -0.37
CCDC28A-202ENST00000611852 A0A1B0GU03 582 aa12.74□□□□□ -0.37
CCDC28A-202ENST00000611852 CYB5BO43169 146 aa12.74□□□□□ -0.37
CCDC28A-202ENST00000611852 TRBV12-3P01733 135 aa12.74□□□□□ -0.37
CCDC28A-202ENST00000611852 ERHP84090 104 aaKnown RBP12.74□□□□□ -0.37
CCDC28A-202ENST00000611852 SLC25A24Q6NUK1 477 aa12.74□□□□□ -0.37
CCDC28A-202ENST00000611852 AKAP14Q86UN6 197 aa12.74□□□□□ -0.37
CCDC28A-202ENST00000611852 OR1P1Q8NH06 330 aa12.74□□□□□ -0.37
CCDC28A-202ENST00000611852 THYN1Q9P016 225 aa12.74□□□□□ -0.37
CCDC28A-202ENST00000611852 TMED3Q9Y3Q3 217 aa12.74□□□□□ -0.37
CCDC28A-202ENST00000611852 CMYA5Q8N3K9 4069 aa12.74□□□□□ -0.37
CCDC28A-202ENST00000611852 C7orf66A4D0T2 115 aa12.73□□□□□ -0.37
CCDC28A-202ENST00000611852 MFSD2BA6NFX1 497 aa12.73□□□□□ -0.37
CCDC28A-202ENST00000611852 HOXA1P49639 335 aaPredicted RBP12.73□□□□□ -0.37
CCDC28A-202ENST00000611852 SLURP1P55000 103 aa12.73□□□□□ -0.37
CCDC28A-202ENST00000611852 OR52B4Q8NGK2 314 aa12.73□□□□□ -0.37
CCDC28A-202ENST00000611852 OR1L6Q8NGR2 347 aa12.73□□□□□ -0.37
CCDC28A-202ENST00000611852 COQ8AQ8NI60 647 aa12.73□□□□□ -0.37
CCDC28A-202ENST00000611852 RCC1LQ96I51 464 aaKnown RBP12.73□□□□□ -0.37
CCDC28A-202ENST00000611852 NEURL2Q9BR09 285 aa12.73□□□□□ -0.37
CCDC28A-202ENST00000611852 CACFD1Q9UGQ2 172 aa12.73□□□□□ -0.37
CCDC28A-202ENST00000611852 S4R3C0 116 aa12.73□□□□□ -0.37
CCDC28A-202ENST00000611852 NOTCH1P46531 2555 aa12.73□□□□□ -0.37
CCDC28A-202ENST00000611852 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.72□□□□□ -0.37
CCDC28A-202ENST00000611852 NXPH3O95157 252 aa12.72□□□□□ -0.37
CCDC28A-202ENST00000611852 HOXB5P09067 269 aa12.72□□□□□ -0.37
CCDC28A-202ENST00000611852 SLC25A6P12236 298 aa12.72□□□□□ -0.37
CCDC28A-202ENST00000611852 IGLL1P15814 213 aa12.72□□□□□ -0.37
CCDC28A-202ENST00000611852 HOXD3P31249 432 aaPredicted RBP12.72□□□□□ -0.37
CCDC28A-202ENST00000611852 OXLD1Q5BKU9 147 aa12.72□□□□□ -0.37
CCDC28A-202ENST00000611852 SAMD5Q5TGI4 173 aa12.72□□□□□ -0.37
CCDC28A-202ENST00000611852 DLX4Q92988 240 aaPredicted RBP12.72□□□□□ -0.37
CCDC28A-202ENST00000611852 CXorf58Q96LI9 332 aa12.72□□□□□ -0.37
CCDC28A-202ENST00000611852 CCDC140Q96MF4 163 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms