RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 ACOT7LQ6ZUV0 252 aa9.04□□□□□ -0.96
LINC00539-204ENST00000608957 ZNF429Q86V71 674 aa9.04□□□□□ -0.96
LINC00539-204ENST00000608957 STPG2Q8N412 459 aa9.04□□□□□ -0.96
LINC00539-204ENST00000608957 WFDC9Q8NEX5 89 aa9.04□□□□□ -0.96
LINC00539-204ENST00000608957 OR4A5Q8NH83 315 aa9.04□□□□□ -0.96
LINC00539-204ENST00000608957 AQP10Q96PS8 301 aa9.04□□□□□ -0.96
LINC00539-204ENST00000608957 RAB40CQ96S21 281 aa9.04□□□□□ -0.96
LINC00539-204ENST00000608957 TSNAXQ99598 290 aaKnown RBP9.04□□□□□ -0.96
LINC00539-204ENST00000608957 RNF5Q99942 180 aa9.04□□□□□ -0.96
LINC00539-204ENST00000608957 CACFD1Q9UGQ2 172 aa9.04□□□□□ -0.96
LINC00539-204ENST00000608957 PRNDQ9UKY0 176 aa9.04□□□□□ -0.96
LINC00539-204ENST00000608957 FOXA2Q9Y261 457 aaPredicted RBP9.04□□□□□ -0.96
LINC00539-204ENST00000608957 A0A0D9SG52 128 aa9.03□□□□□ -0.96
LINC00539-204ENST00000608957 MSGN1A6NI15 193 aa9.03□□□□□ -0.96
LINC00539-204ENST00000608957 SPDEFO95238 335 aa9.03□□□□□ -0.96
LINC00539-204ENST00000608957 IL6RP08887 468 aaPredicted RBP9.03□□□□□ -0.96
LINC00539-204ENST00000608957 IGLL1P15814 213 aa9.03□□□□□ -0.96
LINC00539-204ENST00000608957 P2RY1P47900 373 aa9.03□□□□□ -0.96
LINC00539-204ENST00000608957 AP2S1P53680 142 aaPredicted RBP9.03□□□□□ -0.96
LINC00539-204ENST00000608957 RPL23AP62750 156 aaKnown RBP9.03□□□□□ -0.96
LINC00539-204ENST00000608957 KHDC1LQ5JSQ8 128 aa9.03□□□□□ -0.96
LINC00539-204ENST00000608957 LCNL1Q6ZST4 164 aa9.03□□□□□ -0.96
LINC00539-204ENST00000608957 TMUB2Q71RG4 321 aa9.03□□□□□ -0.96
LINC00539-204ENST00000608957 KCNRGQ8N5I3 272 aa9.03□□□□□ -0.96
LINC00539-204ENST00000608957 OR52E5Q8NH55 327 aa9.03□□□□□ -0.96
LINC00539-204ENST00000608957 TMEM167AQ8TBQ9 72 aa9.03□□□□□ -0.96
LINC00539-204ENST00000608957 RBKSQ9H477 322 aa9.03□□□□□ -0.96
LINC00539-204ENST00000608957 TMEM14BQ9NUH8 114 aa9.03□□□□□ -0.96
LINC00539-204ENST00000608957 CEBPZOSA8MTT3 80 aa9.02□□□□□ -0.97
LINC00539-204ENST00000608957 SLC25A17O43808 307 aa9.02□□□□□ -0.97
LINC00539-204ENST00000608957 IFNA17P01571 189 aa9.02□□□□□ -0.97
LINC00539-204ENST00000608957 PF4V1P10720 104 aa9.02□□□□□ -0.97
LINC00539-204ENST00000608957 IAPPP10997 89 aa9.02□□□□□ -0.97
LINC00539-204ENST00000608957 RPL12P30050 165 aaKnown RBP9.02□□□□□ -0.97
LINC00539-204ENST00000608957 S100A11P31949 105 aa9.02□□□□□ -0.97
LINC00539-204ENST00000608957 SPCS3P61009 180 aa9.02□□□□□ -0.97
LINC00539-204ENST00000608957 CFHR3Q02985 330 aa9.02□□□□□ -0.97
LINC00539-204ENST00000608957 OR2C3Q8N628 320 aa9.02□□□□□ -0.97
LINC00539-204ENST00000608957 LINC00482Q8N8I6 264 aa9.02□□□□□ -0.97
LINC00539-204ENST00000608957 TEX45Q8NA69 505 aa9.02□□□□□ -0.97
LINC00539-204ENST00000608957 ARL6Q9H0F7 186 aa9.02□□□□□ -0.97
LINC00539-204ENST00000608957 ZC4H2Q9NQZ6 224 aa9.02□□□□□ -0.97
LINC00539-204ENST00000608957 LYRM2Q9NU23 88 aaPredicted RBP9.02□□□□□ -0.97
LINC00539-204ENST00000608957 FKBP11Q9NYL4 201 aa9.02□□□□□ -0.97
LINC00539-204ENST00000608957 WSB1Q9Y6I7 421 aa9.02□□□□□ -0.97
LINC00539-204ENST00000608957 AP4M1O00189 453 aa9.01□□□□□ -0.97
LINC00539-204ENST00000608957 BCL2L11O43521 198 aa9.01□□□□□ -0.97
LINC00539-204ENST00000608957 TSC22D2O75157 780 aa9.01□□□□□ -0.97
LINC00539-204ENST00000608957 TMEM50AO95807 157 aa9.01□□□□□ -0.97
LINC00539-204ENST00000608957 RPLP1P05386 114 aaKnown RBP9.01□□□□□ -0.97
LINC00539-204ENST00000608957 CRYGBP07316 175 aa9.01□□□□□ -0.97
LINC00539-204ENST00000608957 FGF2P09038 288 aa9.01□□□□□ -0.97
LINC00539-204ENST00000608957 CD33P20138 364 aa9.01□□□□□ -0.97
LINC00539-204ENST00000608957 CAV2P51636 162 aa9.01□□□□□ -0.97
LINC00539-204ENST00000608957 PAX9P55771 341 aa9.01□□□□□ -0.97
LINC00539-204ENST00000608957 TAS2R30P59541 319 aa9.01□□□□□ -0.97
LINC00539-204ENST00000608957 RPL8P62917 257 aaKnown RBP9.01□□□□□ -0.97
LINC00539-204ENST00000608957 EWSR1Q01844 656 aaKnown RBP eCLIP9.01□□□□□ -0.97
LINC00539-204ENST00000608957 OPCMLQ14982 345 aa9.01□□□□□ -0.97
LINC00539-204ENST00000608957 PSG5Q15238 335 aa9.01□□□□□ -0.97
LINC00539-204ENST00000608957 MMDQ15546 238 aa9.01□□□□□ -0.97
LINC00539-204ENST00000608957 SPINK9Q5DT21 86 aa9.01□□□□□ -0.97
LINC00539-204ENST00000608957 C8orf86Q6ZUL3 223 aa9.01□□□□□ -0.97
LINC00539-204ENST00000608957 OR8H1Q8NGG4 311 aa9.01□□□□□ -0.97
LINC00539-204ENST00000608957 DTD1Q8TEA8 209 aa9.01□□□□□ -0.97
LINC00539-204ENST00000608957 SMIM8Q96KF7 97 aa9.01□□□□□ -0.97
LINC00539-204ENST00000608957 CIB3Q96Q77 187 aaPredicted RBP9.01□□□□□ -0.97
LINC00539-204ENST00000608957 CLCC1Q96S66 551 aa9.01□□□□□ -0.97
LINC00539-204ENST00000608957 RASL11BQ9BPW5 248 aa9.01□□□□□ -0.97
LINC00539-204ENST00000608957 SLC25A31Q9H0C2 315 aa9.01□□□□□ -0.97
LINC00539-204ENST00000608957 TPSG1Q9NRR2 321 aa9.01□□□□□ -0.97
LINC00539-204ENST00000608957 METTL1Q9UBP6 276 aaKnown RBP9.01□□□□□ -0.97
LINC00539-204ENST00000608957 ZNF257Q9Y2Q1 563 aa9.01□□□□□ -0.97
LINC00539-204ENST00000608957 OR51B2Q9Y5P1 312 aa9.01□□□□□ -0.97
LINC00539-204ENST00000608957 KANTRA0A1W2PQU2 76 aa9□□□□□ -0.97
LINC00539-204ENST00000608957 IGSF23A1L1A6 192 aa9□□□□□ -0.97
LINC00539-204ENST00000608957 FAM24AA6NFZ4 105 aa9□□□□□ -0.97
LINC00539-204ENST00000608957 H3BP45 60 aa9□□□□□ -0.97
LINC00539-204ENST00000608957 NBR2O15453 112 aa9□□□□□ -0.97
LINC00539-204ENST00000608957 NDUFA3O95167 84 aa9□□□□□ -0.97
LINC00539-204ENST00000608957 LY86O95711 162 aa9□□□□□ -0.97
LINC00539-204ENST00000608957 PF4P02776 101 aa9□□□□□ -0.97
LINC00539-204ENST00000608957 HOXA1P49639 335 aaPredicted RBP9□□□□□ -0.97
LINC00539-204ENST00000608957 HSPE1P61604 102 aaKnown RBP9□□□□□ -0.97
LINC00539-204ENST00000608957 NDPQ00604 133 aa9□□□□□ -0.97
LINC00539-204ENST00000608957 PRCDQ00LT1 54 aa9□□□□□ -0.97
LINC00539-204ENST00000608957 MRPL41Q8IXM3 137 aaKnown RBP9□□□□□ -0.97
LINC00539-204ENST00000608957 MMD2Q8IY49 270 aa9□□□□□ -0.97
LINC00539-204ENST00000608957 TMEM252Q8N6L7 170 aa9□□□□□ -0.97
LINC00539-204ENST00000608957 NPBQ8NG41 125 aa9□□□□□ -0.97
LINC00539-204ENST00000608957 OR5B3Q8NH48 314 aa9□□□□□ -0.97
LINC00539-204ENST00000608957 DUX3Q96PT4 197 aa9□□□□□ -0.97
LINC00539-204ENST00000608957 ARPC5LQ9BPX5 153 aa9□□□□□ -0.97
LINC00539-204ENST00000608957 ZNF430Q9H8G1 570 aaPredicted RBP9□□□□□ -0.97
LINC00539-204ENST00000608957 PLEKHA3Q9HB20 300 aa9□□□□□ -0.97
LINC00539-204ENST00000608957 AURKAIP1Q9NWT8 199 aaPredicted RBP9□□□□□ -0.97
LINC00539-204ENST00000608957 PSENENQ9NZ42 101 aa9□□□□□ -0.97
LINC00539-204ENST00000608957 KIAA1456Q9P272 454 aa9□□□□□ -0.97
LINC00539-204ENST00000608957 TNCP24821 2201 aa9□□□□□ -0.97
LINC00539-204ENST00000608957 IGHV7-81A0A0B4J1V7 117 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms