RNA–Protein interactions for RNA: ENST00000602716.5

PPFIA3-207, Transcript of PTPRF interacting protein alpha 3, humanhuman

TSL 1 (best)

Gene PPFIA3, Length 2,020 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPFIA3-207ENST00000602716 TMEM249Q2WGJ8 235 aa13.96□□□□□ -0.17
PPFIA3-207ENST00000602716 SLC35E3Q7Z769 313 aa13.96□□□□□ -0.17
PPFIA3-207ENST00000602716 PIP4P2Q8N4L2 257 aa13.96□□□□□ -0.17
PPFIA3-207ENST00000602716 NANPQ8TBE9 248 aa13.96□□□□□ -0.17
PPFIA3-207ENST00000602716 SCGB1C1Q8TD33 95 aa13.96□□□□□ -0.17
PPFIA3-207ENST00000602716 TVP23CQ96ET8 276 aa13.96□□□□□ -0.17
PPFIA3-207ENST00000602716 NIPSNAP3BQ9BS92 247 aa13.96□□□□□ -0.17
PPFIA3-207ENST00000602716 PSMG3Q9BT73 122 aaPredicted RBP13.96□□□□□ -0.17
PPFIA3-207ENST00000602716 RSG1Q9BU20 258 aa13.96□□□□□ -0.17
PPFIA3-207ENST00000602716 RPRMQ9NS64 109 aa13.96□□□□□ -0.17
PPFIA3-207ENST00000602716 TRAV3A0A0B4J244 114 aa13.95□□□□□ -0.18
PPFIA3-207ENST00000602716 S100A9P06702 114 aaKnown RBP13.95□□□□□ -0.18
PPFIA3-207ENST00000602716 METTL15P1P0C7V9 234 aa13.95□□□□□ -0.18
PPFIA3-207ENST00000602716 NQO2P16083 231 aa13.95□□□□□ -0.18
PPFIA3-207ENST00000602716 SLC16A13Q7RTY0 426 aa13.95□□□□□ -0.18
PPFIA3-207ENST00000602716 LINC01356Q8N9X3 169 aa13.95□□□□□ -0.18
PPFIA3-207ENST00000602716 TCEAL7Q9BRU2 100 aa13.95□□□□□ -0.18
PPFIA3-207ENST00000602716 DPM3Q9P2X0 92 aa13.95□□□□□ -0.18
PPFIA3-207ENST00000602716 MMP24Q9Y5R2 645 aa13.95□□□□□ -0.18
PPFIA3-207ENST00000602716 TIMM23O14925 209 aa13.95□□□□□ -0.18
PPFIA3-207ENST00000602716 IGHV4-38-2P0DP08 117 aa13.95□□□□□ -0.18
PPFIA3-207ENST00000602716 SAA4P35542 130 aa13.95□□□□□ -0.18
PPFIA3-207ENST00000602716 MOB3BQ86TA1 216 aa13.95□□□□□ -0.18
PPFIA3-207ENST00000602716 LINC00469Q8N7U9 141 aa13.95□□□□□ -0.18
PPFIA3-207ENST00000602716 SOX21Q9Y651 276 aaPredicted RBP13.95□□□□□ -0.18
PPFIA3-207ENST00000602716 APOA2P02652 100 aa13.94□□□□□ -0.18
PPFIA3-207ENST00000602716 CD24P25063 80 aa13.94□□□□□ -0.18
PPFIA3-207ENST00000602716 UBE2E1P51965 193 aa13.94□□□□□ -0.18
PPFIA3-207ENST00000602716 HBG1P69891 147 aa13.94□□□□□ -0.18
PPFIA3-207ENST00000602716 HBG2P69892 147 aa13.94□□□□□ -0.18
PPFIA3-207ENST00000602716 ZNF726P1Q15940 193 aa13.94□□□□□ -0.18
PPFIA3-207ENST00000602716 SSX2Q16385 188 aa13.94□□□□□ -0.18
PPFIA3-207ENST00000602716 RTL8BQ17RB0 113 aa13.94□□□□□ -0.18
PPFIA3-207ENST00000602716 LRRC75BQ2VPJ9 315 aa13.94□□□□□ -0.18
PPFIA3-207ENST00000602716 BRD3OSQ6XYD6 125 aa13.94□□□□□ -0.18
PPFIA3-207ENST00000602716 MBD3L1Q8WWY6 194 aa13.94□□□□□ -0.18
PPFIA3-207ENST00000602716 C7orf69Q9H7B7 122 aa13.94□□□□□ -0.18
PPFIA3-207ENST00000602716 VSIRQ9H7M9 311 aa13.94□□□□□ -0.18
PPFIA3-207ENST00000602716 TMEM140Q9NV12 185 aa13.94□□□□□ -0.18
PPFIA3-207ENST00000602716 GNG13Q9P2W3 67 aa13.94□□□□□ -0.18
PPFIA3-207ENST00000602716 ITPR3Q14573 2671 aa13.93□□□□□ -0.18
PPFIA3-207ENST00000602716 CXorf65A6NEN9 183 aa13.93□□□□□ -0.18
PPFIA3-207ENST00000602716 ELOBQ15370 118 aa13.93□□□□□ -0.18
PPFIA3-207ENST00000602716 CFHR4Q92496 578 aa13.93□□□□□ -0.18
PPFIA3-207ENST00000602716 RHOVQ96L33 236 aa13.93□□□□□ -0.18
PPFIA3-207ENST00000602716 HARBI1Q96MB7 349 aa13.93□□□□□ -0.18
PPFIA3-207ENST00000602716 PARD6GQ9BYG4 376 aaPredicted RBP13.93□□□□□ -0.18
PPFIA3-207ENST00000602716 WASHC3Q9Y3C0 194 aa13.93□□□□□ -0.18
PPFIA3-207ENST00000602716 TRAV20A0A0B4J274 112 aa13.93□□□□□ -0.18
PPFIA3-207ENST00000602716 TGFAP01135 160 aa13.93□□□□□ -0.18
PPFIA3-207ENST00000602716 BCL2P10415 239 aa13.93□□□□□ -0.18
PPFIA3-207ENST00000602716 MYOD1P15172 320 aa13.93□□□□□ -0.18
PPFIA3-207ENST00000602716 CNTFRP26992 372 aa13.93□□□□□ -0.18
PPFIA3-207ENST00000602716 RPS10P46783 165 aaKnown RBP13.93□□□□□ -0.18
PPFIA3-207ENST00000602716 KLF17Q5JT82 389 aaPredicted RBP13.93□□□□□ -0.18
PPFIA3-207ENST00000602716 Q8WTZ3 238 aa13.93□□□□□ -0.18
PPFIA3-207ENST00000602716 CREBBPQ92793 2442 aa13.92□□□□□ -0.18
PPFIA3-207ENST00000602716 FAM90A26D6RGX4 464 aa13.92□□□□□ -0.18
PPFIA3-207ENST00000602716 NPFFO15130 113 aa13.92□□□□□ -0.18
PPFIA3-207ENST00000602716 CLN5O75503 358 aa13.92□□□□□ -0.18
PPFIA3-207ENST00000602716 SAA1P0DJI8 122 aaPredicted RBP13.92□□□□□ -0.18
PPFIA3-207ENST00000602716 SERF2P84101 59 aa13.92□□□□□ -0.18
PPFIA3-207ENST00000602716 TMEM177Q53S58 311 aa13.92□□□□□ -0.18
PPFIA3-207ENST00000602716 FAM90A2PQ658T7 463 aa13.92□□□□□ -0.18
PPFIA3-207ENST00000602716 OR4A47Q6IF82 309 aa13.92□□□□□ -0.18
PPFIA3-207ENST00000602716 ZNF343Q6P1L6 599 aa13.92□□□□□ -0.18
PPFIA3-207ENST00000602716 SSX7Q7RTT5 188 aa13.92□□□□□ -0.18
PPFIA3-207ENST00000602716 H2BFWTQ7Z2G1 175 aa13.92□□□□□ -0.18
PPFIA3-207ENST00000602716 PDPNQ86YL7 162 aa13.92□□□□□ -0.18
PPFIA3-207ENST00000602716 RCC1LQ96I51 464 aaKnown RBP13.92□□□□□ -0.18
PPFIA3-207ENST00000602716 FOXC2Q99958 501 aa13.92□□□□□ -0.18
PPFIA3-207ENST00000602716 TPSG1Q9NRR2 321 aa13.92□□□□□ -0.18
PPFIA3-207ENST00000602716 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.92□□□□□ -0.181e-6■■■■■ 36.7
PPFIA3-207ENST00000602716 IGLV2-23P01705 113 aa13.91□□□□□ -0.18
PPFIA3-207ENST00000602716 CXCL1P09341 107 aa13.91□□□□□ -0.18
PPFIA3-207ENST00000602716 SPINK9Q5DT21 86 aa13.91□□□□□ -0.18
PPFIA3-207ENST00000602716 LILRB2Q8N423 598 aa13.91□□□□□ -0.18
PPFIA3-207ENST00000602716 IGHV1-69DA0A0B4J2H0 117 aa13.91□□□□□ -0.18
PPFIA3-207ENST00000602716 B4DEV8 164 aa13.91□□□□□ -0.18
PPFIA3-207ENST00000602716 SMAD7O15105 426 aaKnown RBP13.91□□□□□ -0.18
PPFIA3-207ENST00000602716 IGHV1-69P01742 117 aa13.91□□□□□ -0.18
PPFIA3-207ENST00000602716 LGALS4P56470 323 aa13.91□□□□□ -0.18
PPFIA3-207ENST00000602716 ERVK-16P61578 105 aa13.91□□□□□ -0.18
PPFIA3-207ENST00000602716 SPANXN5Q5MJ07 72 aa13.91□□□□□ -0.18
PPFIA3-207ENST00000602716 LCN15Q6UWW0 184 aa13.91□□□□□ -0.18
PPFIA3-207ENST00000602716 FLYWCH2Q96CP2 140 aaKnown RBP13.91□□□□□ -0.18
PPFIA3-207ENST00000602716 OR4C12Q96R67 309 aa13.91□□□□□ -0.18
PPFIA3-207ENST00000602716 QTRT1Q9BXR0 403 aaKnown RBP13.91□□□□□ -0.18
PPFIA3-207ENST00000602716 WDR61Q9GZS3 305 aaKnown RBP13.91□□□□□ -0.18
PPFIA3-207ENST00000602716 ZFP92A6NM28 416 aa13.9□□□□□ -0.18
PPFIA3-207ENST00000602716 VENTXO95231 258 aa13.9□□□□□ -0.18
PPFIA3-207ENST00000602716 CEACAM3P40198 252 aa13.9□□□□□ -0.18
PPFIA3-207ENST00000602716 RAB11AP62491 216 aa13.9□□□□□ -0.18
PPFIA3-207ENST00000602716 RELBQ01201 579 aa13.9□□□□□ -0.18
PPFIA3-207ENST00000602716 KIAA0141Q14154 515 aaPredicted RBP13.9□□□□□ -0.18
PPFIA3-207ENST00000602716 POU2AF1Q16633 256 aa13.9□□□□□ -0.18
PPFIA3-207ENST00000602716 TMEM41BQ5BJD5 291 aa13.9□□□□□ -0.18
PPFIA3-207ENST00000602716 MINOS1Q5TGZ0 78 aa13.9□□□□□ -0.18
PPFIA3-207ENST00000602716 MINOS1-NBL1R4GNA1 71 aa13.9□□□□□ -0.18
PPFIA3-207ENST00000602716 TNFRSF9Q07011 255 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms