RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 ZNF580Q9UK33 172 aa6.84□□□□□ -1.31
TRIM28-214ENST00000600840 TCRBV4S1A1TA0A5B7 111 aa6.83□□□□□ -1.32
TRIM28-214ENST00000600840 KRBOX1C9JBD0 128 aa6.83□□□□□ -1.32
TRIM28-214ENST00000600840 BCL2L11O43521 198 aa6.83□□□□□ -1.32
TRIM28-214ENST00000600840 VDAC1P21796 283 aa6.83□□□□□ -1.32
TRIM28-214ENST00000600840 PPIFP30405 207 aaKnown RBP6.83□□□□□ -1.32
TRIM28-214ENST00000600840 CFHR3Q02985 330 aa6.83□□□□□ -1.32
TRIM28-214ENST00000600840 IL15RAQ13261 267 aa6.83□□□□□ -1.32
TRIM28-214ENST00000600840 KLK9Q2XQG4 91 aa6.83□□□□□ -1.32
TRIM28-214ENST00000600840 VMA21Q3ZAQ7 101 aa6.83□□□□□ -1.32
TRIM28-214ENST00000600840 DEFB121Q5J5C9 76 aa6.83□□□□□ -1.32
TRIM28-214ENST00000600840 C9orf152Q5JTZ5 239 aa6.83□□□□□ -1.32
TRIM28-214ENST00000600840 TMEM268Q5VZI3 342 aa6.83□□□□□ -1.32
TRIM28-214ENST00000600840 EIF5AL1Q6IS14 154 aaKnown RBP6.83□□□□□ -1.32
TRIM28-214ENST00000600840 ETV3LQ6ZN32 361 aa6.83□□□□□ -1.32
TRIM28-214ENST00000600840 SSX9Q7RTT3 188 aa6.83□□□□□ -1.32
TRIM28-214ENST00000600840 HSD17B13Q7Z5P4 300 aaPredicted RBP6.83□□□□□ -1.32
TRIM28-214ENST00000600840 ZNF329Q86UD4 541 aa6.83□□□□□ -1.32
TRIM28-214ENST00000600840 COMMD7Q86VX2 200 aa6.83□□□□□ -1.32
TRIM28-214ENST00000600840 LGI3Q8N145 548 aa6.83□□□□□ -1.32
TRIM28-214ENST00000600840 VSTM2AQ8TAG5 236 aa6.83□□□□□ -1.32
TRIM28-214ENST00000600840 NOL4LQ96MY1 436 aaPredicted RBP6.83□□□□□ -1.32
TRIM28-214ENST00000600840 CITED4Q96RK1 184 aa6.83□□□□□ -1.32
TRIM28-214ENST00000600840 RASL11BQ9BPW5 248 aa6.83□□□□□ -1.32
TRIM28-214ENST00000600840 AIFM2Q9BRQ8 373 aa6.83□□□□□ -1.32
TRIM28-214ENST00000600840 TMEM14BQ9NUH8 114 aa6.83□□□□□ -1.32
TRIM28-214ENST00000600840 LINC00527Q9UJ94 153 aa6.83□□□□□ -1.32
TRIM28-214ENST00000600840 KLK9Q9UKQ9 250 aa6.83□□□□□ -1.32
TRIM28-214ENST00000600840 TNFSF18Q9UNG2 199 aa6.83□□□□□ -1.32
TRIM28-214ENST00000600840 TEX50A0A1B0GTY4 177 aa6.82□□□□□ -1.32
TRIM28-214ENST00000600840 DUXBA0A1W2PPF3 345 aa6.82□□□□□ -1.32
TRIM28-214ENST00000600840 WI2-2373I1.2A0A1W2PRP0 233 aa6.82□□□□□ -1.32
TRIM28-214ENST00000600840 MPTX1A8MV57 137 aa6.82□□□□□ -1.32
TRIM28-214ENST00000600840 TEX22C9J3V5 150 aa6.82□□□□□ -1.32
TRIM28-214ENST00000600840 TAAR5O14804 337 aa6.82□□□□□ -1.32
TRIM28-214ENST00000600840 ADAP1O75689 374 aa6.82□□□□□ -1.32
TRIM28-214ENST00000600840 CA2P00918 260 aa6.82□□□□□ -1.32
TRIM28-214ENST00000600840 SLC25A6P12236 298 aa6.82□□□□□ -1.32
TRIM28-214ENST00000600840 CD33P20138 364 aa6.82□□□□□ -1.32
TRIM28-214ENST00000600840 VAMP1P23763 118 aa6.82□□□□□ -1.32
TRIM28-214ENST00000600840 PSMB6P28072 239 aa6.82□□□□□ -1.32
TRIM28-214ENST00000600840 OR2B8PP59922 312 aa6.82□□□□□ -1.32
TRIM28-214ENST00000600840 SRPXP78539 464 aa6.82□□□□□ -1.32
TRIM28-214ENST00000600840 C10orf55Q5SWW7 151 aa6.82□□□□□ -1.32
TRIM28-214ENST00000600840 ZNF429Q86V71 674 aa6.82□□□□□ -1.32
TRIM28-214ENST00000600840 ZNF695Q8IW36 515 aa6.82□□□□□ -1.32
TRIM28-214ENST00000600840 FAM219AQ8IW50 185 aa6.82□□□□□ -1.32
TRIM28-214ENST00000600840 FOXRED2Q8IWF2 684 aa6.82□□□□□ -1.32
TRIM28-214ENST00000600840 MMD2Q8IY49 270 aa6.82□□□□□ -1.32
TRIM28-214ENST00000600840 STOML3Q8TAV4 291 aa6.82□□□□□ -1.32
TRIM28-214ENST00000600840 CASTOR1Q8WTX7 329 aa6.82□□□□□ -1.32
TRIM28-214ENST00000600840 CLCC1Q96S66 551 aa6.82□□□□□ -1.32
TRIM28-214ENST00000600840 NDUFA4L2Q9NRX3 87 aa6.82□□□□□ -1.32
TRIM28-214ENST00000600840 COA4Q9NYJ1 87 aa6.82□□□□□ -1.32
TRIM28-214ENST00000600840 KIAA1456Q9P272 454 aa6.82□□□□□ -1.32
TRIM28-214ENST00000600840 FOXA2Q9Y261 457 aaPredicted RBP6.82□□□□□ -1.32
TRIM28-214ENST00000600840 NSG2Q9Y328 171 aa6.82□□□□□ -1.32
TRIM28-214ENST00000600840 TNCP24821 2201 aa6.81□□□□□ -1.32
TRIM28-214ENST00000600840 COL7A1Q02388 2944 aa6.81□□□□□ -1.32
TRIM28-214ENST00000600840 C5orf51A6NDU8 294 aa6.81□□□□□ -1.32
TRIM28-214ENST00000600840 C15orf61A6NNL5 157 aa6.81□□□□□ -1.32
TRIM28-214ENST00000600840 INS-IGF2F8WCM5 200 aa6.81□□□□□ -1.32
TRIM28-214ENST00000600840 ATP6V0E1O15342 81 aa6.81□□□□□ -1.32
TRIM28-214ENST00000600840 SOX15O60248 233 aa6.81□□□□□ -1.32
TRIM28-214ENST00000600840 IFNA21P01568 189 aa6.81□□□□□ -1.32
TRIM28-214ENST00000600840 PF4V1P10720 104 aa6.81□□□□□ -1.32
TRIM28-214ENST00000600840 LYL1P12980 280 aa6.81□□□□□ -1.32
TRIM28-214ENST00000600840 HOXD3P31249 432 aaPredicted RBP6.81□□□□□ -1.32
TRIM28-214ENST00000600840 MAS1LP35410 378 aa6.81□□□□□ -1.32
TRIM28-214ENST00000600840 RPL8P62917 257 aaKnown RBP6.81□□□□□ -1.32
TRIM28-214ENST00000600840 CD69Q07108 199 aa6.81□□□□□ -1.32
TRIM28-214ENST00000600840 FXYD3Q14802 87 aa6.81□□□□□ -1.32
TRIM28-214ENST00000600840 GGNBP1Q5YKI7 109 aa6.81□□□□□ -1.32
TRIM28-214ENST00000600840 DMBX1Q8NFW5 382 aa6.81□□□□□ -1.32
TRIM28-214ENST00000600840 PPP1R1CQ8WVI7 109 aa6.81□□□□□ -1.32
TRIM28-214ENST00000600840 WDR89Q96FK6 387 aaPredicted RBP6.81□□□□□ -1.32
TRIM28-214ENST00000600840 OR10C1Q96KK4 312 aa6.81□□□□□ -1.32
TRIM28-214ENST00000600840 C2orf50Q96LR7 162 aa6.81□□□□□ -1.32
TRIM28-214ENST00000600840 ARPC5LQ9BPX5 153 aa6.81□□□□□ -1.32
TRIM28-214ENST00000600840 ZNF257Q9Y2Q1 563 aa6.81□□□□□ -1.32
TRIM28-214ENST00000600840 TMED3Q9Y3Q3 217 aa6.81□□□□□ -1.32
TRIM28-214ENST00000600840 TSSC4Q9Y5U2 329 aaPredicted RBP6.81□□□□□ -1.32
TRIM28-214ENST00000600840 DNAH9Q9NYC9 4486 aa6.8□□□□□ -1.32
TRIM28-214ENST00000600840 TRAV14DV4A0A0A6YYC5 116 aa6.8□□□□□ -1.32
TRIM28-214ENST00000600840 A0A1B0GU03 582 aa6.8□□□□□ -1.32
TRIM28-214ENST00000600840 IGLC7A0M8Q6 106 aa6.8□□□□□ -1.32
TRIM28-214ENST00000600840 RNF222A6NCQ9 220 aa6.8□□□□□ -1.32
TRIM28-214ENST00000600840 MSGN1A6NI15 193 aa6.8□□□□□ -1.32
TRIM28-214ENST00000600840 G3V318 75 aa6.8□□□□□ -1.32
TRIM28-214ENST00000600840 TEX46H3BTG2 121 aa6.8□□□□□ -1.32
TRIM28-214ENST00000600840 ATG12O94817 140 aa6.8□□□□□ -1.32
TRIM28-214ENST00000600840 BRI3O95415 125 aa6.8□□□□□ -1.32
TRIM28-214ENST00000600840 SIX6O95475 246 aa6.8□□□□□ -1.32
TRIM28-214ENST00000600840 IGLV1-40P01703 118 aa6.8□□□□□ -1.32
TRIM28-214ENST00000600840 PF4P02776 101 aa6.8□□□□□ -1.32
TRIM28-214ENST00000600840 RLN2P04090 185 aa6.8□□□□□ -1.32
TRIM28-214ENST00000600840 CRYGCP07315 174 aa6.8□□□□□ -1.32
TRIM28-214ENST00000600840 HOXB5P09067 269 aa6.8□□□□□ -1.32
TRIM28-214ENST00000600840 TPT1P13693 172 aaKnown RBP6.8□□□□□ -1.32
TRIM28-214ENST00000600840 ZP3P21754 424 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms