RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 CENPXA8MT69 81 aa10.91□□□□□ -0.66
SHKBP1-217ENST00000598558 UPK1BO75841 260 aa10.91□□□□□ -0.66
SHKBP1-217ENST00000598558 ATG12O94817 140 aa10.91□□□□□ -0.66
SHKBP1-217ENST00000598558 VAMP1P23763 118 aa10.91□□□□□ -0.66
SHKBP1-217ENST00000598558 EXOSC2Q13868 293 aaKnown RBP10.91□□□□□ -0.66
SHKBP1-217ENST00000598558 NMSQ5H8A3 153 aa10.91□□□□□ -0.66
SHKBP1-217ENST00000598558 FAM223AQ8IWN6 122 aa10.91□□□□□ -0.66
SHKBP1-217ENST00000598558 OR2C3Q8N628 320 aa10.91□□□□□ -0.66
SHKBP1-217ENST00000598558 DPF1Q92782 380 aa10.91□□□□□ -0.66
SHKBP1-217ENST00000598558 CCDC140Q96MF4 163 aa10.91□□□□□ -0.66
SHKBP1-217ENST00000598558 F11RQ9Y624 299 aaKnown RBP10.91□□□□□ -0.66
SHKBP1-217ENST00000598558 MEGF8Q7Z7M0 2845 aa10.91□□□□□ -0.66
SHKBP1-217ENST00000598558 IGHV3-21A0A0B4J1V1 117 aa10.9□□□□□ -0.66
SHKBP1-217ENST00000598558 A0A0B4J2A0 478 aa10.9□□□□□ -0.66
SHKBP1-217ENST00000598558 C9orf170A2RU37 121 aa10.9□□□□□ -0.66
SHKBP1-217ENST00000598558 BMPR1BO00238 502 aa10.9□□□□□ -0.66
SHKBP1-217ENST00000598558 PRB2P02812 416 aaPredicted RBP10.9□□□□□ -0.66
SHKBP1-217ENST00000598558 DEFA4P12838 97 aa10.9□□□□□ -0.66
SHKBP1-217ENST00000598558 HOXD3P31249 432 aaPredicted RBP10.9□□□□□ -0.66
SHKBP1-217ENST00000598558 KRTAP10-11P60412 298 aa10.9□□□□□ -0.66
SHKBP1-217ENST00000598558 KPRPQ5T749 579 aaPredicted RBP10.9□□□□□ -0.66
SHKBP1-217ENST00000598558 THOC7Q6I9Y2 204 aaKnown RBP10.9□□□□□ -0.66
SHKBP1-217ENST00000598558 SLC25A24Q6NUK1 477 aa10.9□□□□□ -0.66
SHKBP1-217ENST00000598558 FAM219AQ8IW50 185 aa10.9□□□□□ -0.66
SHKBP1-217ENST00000598558 LGI3Q8N145 548 aa10.9□□□□□ -0.66
SHKBP1-217ENST00000598558 LRTM2Q8N967 370 aa10.9□□□□□ -0.66
SHKBP1-217ENST00000598558 RNASE11Q8TAA1 199 aaKnown RBP10.9□□□□□ -0.66
SHKBP1-217ENST00000598558 RCC1LQ96I51 464 aaKnown RBP10.9□□□□□ -0.66
SHKBP1-217ENST00000598558 WDR12Q9GZL7 423 aaKnown RBP10.9□□□□□ -0.66
SHKBP1-217ENST00000598558 CTNNBIP1Q9NSA3 81 aaPredicted RBP10.9□□□□□ -0.66
SHKBP1-217ENST00000598558 PEF1Q9UBV8 284 aaKnown RBP10.9□□□□□ -0.66
SHKBP1-217ENST00000598558 SHPKQ9UHJ6 478 aa10.9□□□□□ -0.66
SHKBP1-217ENST00000598558 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.89□□□□□ -0.67
SHKBP1-217ENST00000598558 PPP5D1E7EU14 171 aa10.89□□□□□ -0.67
SHKBP1-217ENST00000598558 NXPH3O95157 252 aa10.89□□□□□ -0.67
SHKBP1-217ENST00000598558 IFNA17P01571 189 aa10.89□□□□□ -0.67
SHKBP1-217ENST00000598558 HLA-AP01891 365 aaKnown RBP10.89□□□□□ -0.67
SHKBP1-217ENST00000598558 TCRBP04435 133 aa10.89□□□□□ -0.67
SHKBP1-217ENST00000598558 OR4E1P0C645 316 aa10.89□□□□□ -0.67
SHKBP1-217ENST00000598558 OR8U8P0C7N1 319 aa10.89□□□□□ -0.67
SHKBP1-217ENST00000598558 HIST1H1BP16401 226 aaKnown RBP10.89□□□□□ -0.67
SHKBP1-217ENST00000598558 MECP2P51608 486 aaKnown RBP10.89□□□□□ -0.67
SHKBP1-217ENST00000598558 ASAH1Q13510 395 aa10.89□□□□□ -0.67
SHKBP1-217ENST00000598558 HSD17B13Q7Z5P4 300 aaPredicted RBP10.89□□□□□ -0.67
SHKBP1-217ENST00000598558 OR52B4Q8NGK2 314 aa10.89□□□□□ -0.67
SHKBP1-217ENST00000598558 RANGRFQ9HD47 186 aaPredicted RBP10.89□□□□□ -0.67
SHKBP1-217ENST00000598558 F8W735 103 aaPredicted RBP10.88□□□□□ -0.67
SHKBP1-217ENST00000598558 INS-IGF2F8WCM5 200 aa10.88□□□□□ -0.67
SHKBP1-217ENST00000598558 K7EIM0 57 aa10.88□□□□□ -0.67
SHKBP1-217ENST00000598558 ANXA3P12429 323 aa10.88□□□□□ -0.67
SHKBP1-217ENST00000598558 DEFA6Q01524 100 aa10.88□□□□□ -0.67
SHKBP1-217ENST00000598558 DHRS2Q13268 280 aa10.88□□□□□ -0.67
SHKBP1-217ENST00000598558 KLF5Q13887 457 aaPredicted RBP10.88□□□□□ -0.67
SHKBP1-217ENST00000598558 CLEC19AQ6UXS0 136 aa10.88□□□□□ -0.67
SHKBP1-217ENST00000598558 ZNF502Q8TBZ5 544 aa10.88□□□□□ -0.67
SHKBP1-217ENST00000598558 ZNF414Q96IQ9 312 aa10.88□□□□□ -0.67
SHKBP1-217ENST00000598558 C20orf85Q9H1P6 137 aa10.88□□□□□ -0.67
SHKBP1-217ENST00000598558 PLEKHA3Q9HB20 300 aa10.88□□□□□ -0.67
SHKBP1-217ENST00000598558 NOTCH1P46531 2555 aa10.87□□□□□ -0.67
SHKBP1-217ENST00000598558 TRAV6A0A075B6T7 132 aa10.87□□□□□ -0.67
SHKBP1-217ENST00000598558 OVOL1O14753 267 aa10.87□□□□□ -0.67
SHKBP1-217ENST00000598558 PITX3O75364 302 aa10.87□□□□□ -0.67
SHKBP1-217ENST00000598558 ADAP1O75689 374 aa10.87□□□□□ -0.67
SHKBP1-217ENST00000598558 DHFRP00374 187 aa10.87□□□□□ -0.67
SHKBP1-217ENST00000598558 IGHV3-48P01763 117 aa10.87□□□□□ -0.67
SHKBP1-217ENST00000598558 HOXB5P09067 269 aa10.87□□□□□ -0.67
SHKBP1-217ENST00000598558 SULT1A3P0DMM9 295 aa10.87□□□□□ -0.67
SHKBP1-217ENST00000598558 SULT1A4P0DMN0 295 aa10.87□□□□□ -0.67
SHKBP1-217ENST00000598558 RNASE2P10153 161 aaKnown RBP10.87□□□□□ -0.67
SHKBP1-217ENST00000598558 SPCS3P61009 180 aa10.87□□□□□ -0.67
SHKBP1-217ENST00000598558 UBE2MP61081 183 aaKnown RBP10.87□□□□□ -0.67
SHKBP1-217ENST00000598558 PDLIM3Q53GG5 364 aaPredicted RBP10.87□□□□□ -0.67
SHKBP1-217ENST00000598558 PVRIGQ6DKI7 326 aa10.87□□□□□ -0.67
SHKBP1-217ENST00000598558 IL34Q6ZMJ4 242 aa10.87□□□□□ -0.67
SHKBP1-217ENST00000598558 LYG2Q86SG7 212 aa10.87□□□□□ -0.67
SHKBP1-217ENST00000598558 OR1P1Q8NH06 330 aa10.87□□□□□ -0.67
SHKBP1-217ENST00000598558 OR52E5Q8NH55 327 aa10.87□□□□□ -0.67
SHKBP1-217ENST00000598558 TMEM170AQ8WVE7 144 aa10.87□□□□□ -0.67
SHKBP1-217ENST00000598558 ZC4H2Q9NQZ6 224 aa10.87□□□□□ -0.67
SHKBP1-217ENST00000598558 NOTCH3Q9UM47 2321 aa10.87□□□□□ -0.67
SHKBP1-217ENST00000598558 MPTX1A8MV57 137 aa10.86□□□□□ -0.67
SHKBP1-217ENST00000598558 SEC14L6B5MCN3 397 aa10.86□□□□□ -0.67
SHKBP1-217ENST00000598558 I3L2K1 104 aa10.86□□□□□ -0.67
SHKBP1-217ENST00000598558 OR2C1O95371 312 aa10.86□□□□□ -0.67
SHKBP1-217ENST00000598558 CLEC3BP05452 202 aa10.86□□□□□ -0.67
SHKBP1-217ENST00000598558 SYNJ2BPP57105 145 aa10.86□□□□□ -0.67
SHKBP1-217ENST00000598558 SRPXP78539 464 aa10.86□□□□□ -0.67
SHKBP1-217ENST00000598558 SMCO1Q147U7 214 aa10.86□□□□□ -0.67
SHKBP1-217ENST00000598558 MLANAQ16655 118 aa10.86□□□□□ -0.67
SHKBP1-217ENST00000598558 BSXQ3C1V8 233 aa10.86□□□□□ -0.67
SHKBP1-217ENST00000598558 GGNBP1Q5YKI7 109 aa10.86□□□□□ -0.67
SHKBP1-217ENST00000598558 ZNF114Q8NC26 417 aa10.86□□□□□ -0.67
SHKBP1-217ENST00000598558 SCARB1Q8WTV0 552 aa10.86□□□□□ -0.67
SHKBP1-217ENST00000598558 EEF1AKMT3Q96AZ1 226 aa10.86□□□□□ -0.67
SHKBP1-217ENST00000598558 SEC22CQ9BRL7 303 aa10.86□□□□□ -0.67
SHKBP1-217ENST00000598558 NUDT15Q9NV35 164 aa10.86□□□□□ -0.67
SHKBP1-217ENST00000598558 DNAH3Q8TD57 4116 aa10.86□□□□□ -0.67
SHKBP1-217ENST00000598558 A0A1B0GU03 582 aa10.85□□□□□ -0.67
SHKBP1-217ENST00000598558 FAM240BA0A1B0GVZ2 78 aa10.85□□□□□ -0.67
SHKBP1-217ENST00000598558 WIPF1O43516 503 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms