RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 ADGRG4Q8IZF6 3080 aa12.63□□□□□ -0.39
UPF1-204ENST00000596842 A8MXE2 369 aa12.63□□□□□ -0.39
UPF1-204ENST00000596842 ITGB1BP1O14713 200 aa12.63□□□□□ -0.39
UPF1-204ENST00000596842 SERF1AO75920 110 aa12.63□□□□□ -0.39
UPF1-204ENST00000596842 Q8TCH9 128 aa12.63□□□□□ -0.39
UPF1-204ENST00000596842 CRYBB3P26998 211 aa12.62□□□□□ -0.39
UPF1-204ENST00000596842 MLANAQ16655 118 aa12.62□□□□□ -0.39
UPF1-204ENST00000596842 ACSF3Q4G176 576 aaPredicted RBP12.62□□□□□ -0.39
UPF1-204ENST00000596842 NAA38Q9BRA0 125 aaKnown RBP12.62□□□□□ -0.39
UPF1-204ENST00000596842 KCNIP2Q9NS61 270 aa12.62□□□□□ -0.39
UPF1-204ENST00000596842 ELOVL5Q9NYP7 299 aa12.62□□□□□ -0.39
UPF1-204ENST00000596842 NAT8BQ9UHF3 227 aa12.62□□□□□ -0.39
UPF1-204ENST00000596842 M0R1B8 84 aa12.62□□□□□ -0.39
UPF1-204ENST00000596842 IL6RP08887 468 aaPredicted RBP12.62□□□□□ -0.39
UPF1-204ENST00000596842 DUX4L9Q6RFH8 374 aaPredicted RBP12.62□□□□□ -0.39
UPF1-204ENST00000596842 RNASEH2CQ8TDP1 164 aaKnown RBP12.62□□□□□ -0.39
UPF1-204ENST00000596842 RNASE7Q9H1E1 156 aaKnown RBP12.62□□□□□ -0.39
UPF1-204ENST00000596842 ATMQ13315 3056 aa12.62□□□□□ -0.39
UPF1-204ENST00000596842 CXorf1O96002 111 aa12.62□□□□□ -0.39
UPF1-204ENST00000596842 CDKN1AP38936 164 aa12.62□□□□□ -0.39
UPF1-204ENST00000596842 MIR17HGQ75NE6 70 aa12.62□□□□□ -0.39
UPF1-204ENST00000596842 SLC35D1Q9NTN3 355 aa12.62□□□□□ -0.39
UPF1-204ENST00000596842 C21orf140B9A014 251 aa12.61□□□□□ -0.39
UPF1-204ENST00000596842 TOX4O94842 621 aa12.61□□□□□ -0.39
UPF1-204ENST00000596842 NPY1RP25929 384 aa12.61□□□□□ -0.39
UPF1-204ENST00000596842 MORN2Q502X0 79 aa12.61□□□□□ -0.39
UPF1-204ENST00000596842 GTF2H5Q6ZYL4 71 aa12.61□□□□□ -0.39
UPF1-204ENST00000596842 CENPVQ7Z7K6 275 aaPredicted RBP12.61□□□□□ -0.39
UPF1-204ENST00000596842 C9orf106Q8NAJ2 232 aa12.61□□□□□ -0.39
UPF1-204ENST00000596842 MDS2Q8NDY4 140 aa12.61□□□□□ -0.39
UPF1-204ENST00000596842 NDUFS8O00217 210 aa12.61□□□□□ -0.39
UPF1-204ENST00000596842 GCHFRP30047 84 aa12.61□□□□□ -0.39
UPF1-204ENST00000596842 UBE2V1Q13404 147 aa12.61□□□□□ -0.39
UPF1-204ENST00000596842 PQLC2Q6ZP29 291 aa12.61□□□□□ -0.39
UPF1-204ENST00000596842 FAM19A2Q8N3H0 131 aa12.61□□□□□ -0.39
UPF1-204ENST00000596842 KLHDC1Q8N7A1 406 aa12.61□□□□□ -0.39
UPF1-204ENST00000596842 NAV3Q8IVL0 2385 aa12.61□□□□□ -0.39
UPF1-204ENST00000596842 NKX6-3A6NJ46 265 aa12.61□□□□□ -0.39
UPF1-204ENST00000596842 SNAI2O43623 268 aa12.61□□□□□ -0.39
UPF1-204ENST00000596842 CA1P00915 261 aaPredicted RBP12.61□□□□□ -0.39
UPF1-204ENST00000596842 P0C879 139 aa12.61□□□□□ -0.39
UPF1-204ENST00000596842 UQCRFS1P47985 274 aa12.61□□□□□ -0.39
UPF1-204ENST00000596842 RAB31Q13636 194 aa12.61□□□□□ -0.39
UPF1-204ENST00000596842 KRTCAP3Q53RY4 240 aa12.61□□□□□ -0.39
UPF1-204ENST00000596842 INO80CQ6PI98 192 aaPredicted RBP12.61□□□□□ -0.39
UPF1-204ENST00000596842 OR2V2Q96R30 315 aa12.61□□□□□ -0.39
UPF1-204ENST00000596842 TET2Q6N021 2002 aaPredicted RBP12.61□□□□□ -0.39
UPF1-204ENST00000596842 GFRA3O60609 400 aa12.6□□□□□ -0.39
UPF1-204ENST00000596842 CA2P00918 260 aa12.6□□□□□ -0.39
UPF1-204ENST00000596842 EFNB3Q15768 340 aa12.6□□□□□ -0.39
UPF1-204ENST00000596842 TEPPQ6URK8 271 aa12.6□□□□□ -0.39
UPF1-204ENST00000596842 SGK494Q96LW2 274 aa12.6□□□□□ -0.39
UPF1-204ENST00000596842 NPVFQ9HCQ7 196 aa12.6□□□□□ -0.39
UPF1-204ENST00000596842 COLQQ9Y215 455 aaPredicted RBP12.6□□□□□ -0.39
UPF1-204ENST00000596842 LCN2P80188 198 aa12.6□□□□□ -0.39
UPF1-204ENST00000596842 Q6ZT83 130 aa12.6□□□□□ -0.39
UPF1-204ENST00000596842 TMEM106BQ9NUM4 274 aa12.6□□□□□ -0.39
UPF1-204ENST00000596842 UQCR10Q9UDW1 63 aa12.6□□□□□ -0.39
UPF1-204ENST00000596842 ZNF253O75346 499 aa12.6□□□□□ -0.39
UPF1-204ENST00000596842 SMAGPQ0VAQ4 97 aa12.6□□□□□ -0.39
UPF1-204ENST00000596842 GAGE1Q13065 139 aa12.6□□□□□ -0.39
UPF1-204ENST00000596842 TCTEX1D1Q8N7M0 179 aa12.6□□□□□ -0.39
UPF1-204ENST00000596842 SLC24A4Q8NFF2 622 aa12.6□□□□□ -0.39
UPF1-204ENST00000596842 CLUHP3Q96NS8 147 aa12.6□□□□□ -0.39
UPF1-204ENST00000596842 IGKV1D-17A0A075B6S4 117 aa12.59□□□□□ -0.39
UPF1-204ENST00000596842 ADH4P08319 380 aa12.59□□□□□ -0.39
UPF1-204ENST00000596842 PPOXP50336 477 aa12.59□□□□□ -0.39
UPF1-204ENST00000596842 RPL15P61313 204 aaKnown RBP12.59□□□□□ -0.39
UPF1-204ENST00000596842 LHFPL4Q7Z7J7 247 aa12.59□□□□□ -0.39
UPF1-204ENST00000596842 FDCSPQ8NFU4 85 aa12.59□□□□□ -0.39
UPF1-204ENST00000596842 MED13LQ71F56 2210 aa12.59□□□□□ -0.39
UPF1-204ENST00000596842 AHRRA9YTQ3 701 aa12.59□□□□□ -0.39
UPF1-204ENST00000596842 STAG3L2P0CL84 134 aa12.59□□□□□ -0.39
UPF1-204ENST00000596842 STAG3L3P0CL85 134 aa12.59□□□□□ -0.39
UPF1-204ENST00000596842 REG1BP48304 166 aa12.59□□□□□ -0.39
UPF1-204ENST00000596842 GNG4P50150 75 aa12.59□□□□□ -0.39
UPF1-204ENST00000596842 RHOBP62745 196 aa12.59□□□□□ -0.39
UPF1-204ENST00000596842 Q8N7P7 452 aa12.59□□□□□ -0.39
UPF1-204ENST00000596842 SNRNP40Q96DI7 357 aaKnown RBP12.59□□□□□ -0.39
UPF1-204ENST00000596842 SSBP3Q9BWW4 388 aaPredicted RBP12.59□□□□□ -0.39
UPF1-204ENST00000596842 TANC2Q9HCD6 1990 aa12.59□□□□□ -0.39
UPF1-204ENST00000596842 K7EN84 100 aa12.59□□□□□ -0.39
UPF1-204ENST00000596842 C1orf229Q6ZS94 237 aaPredicted RBP12.59□□□□□ -0.39
UPF1-204ENST00000596842 MMD2Q8IY49 270 aa12.59□□□□□ -0.39
UPF1-204ENST00000596842 TECRQ9NZ01 308 aaKnown RBP12.59□□□□□ -0.39
UPF1-204ENST00000596842 RELBQ01201 579 aa12.58□□□□□ -0.4
UPF1-204ENST00000596842 COA6Q5JTJ3 125 aaKnown RBP12.58□□□□□ -0.4
UPF1-204ENST00000596842 AMMECR1LQ6DCA0 310 aa12.58□□□□□ -0.4
UPF1-204ENST00000596842 PRB4P10163 310 aaPredicted RBP12.58□□□□□ -0.4
UPF1-204ENST00000596842 TDGF1P13385 188 aa12.58□□□□□ -0.4
UPF1-204ENST00000596842 OPRK1P41145 380 aa12.58□□□□□ -0.4
UPF1-204ENST00000596842 CENPWQ5EE01 88 aa12.58□□□□□ -0.4
UPF1-204ENST00000596842 PPP1R35Q8TAP8 253 aa12.58□□□□□ -0.4
UPF1-204ENST00000596842 HELTA6NFD8 242 aa12.58□□□□□ -0.4
UPF1-204ENST00000596842 J3QW42 95 aa12.58□□□□□ -0.4
UPF1-204ENST00000596842 APELAP0DMC3 54 aa12.58□□□□□ -0.4
UPF1-204ENST00000596842 CDKN1BP46527 198 aa12.58□□□□□ -0.4
UPF1-204ENST00000596842 Q6ZWC4 215 aa12.58□□□□□ -0.4
UPF1-204ENST00000596842 CALYQ9NYX4 217 aa12.58□□□□□ -0.4
UPF1-204ENST00000596842 DMXL1Q9Y485 3027 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms