RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 HLA-GP17693 338 aa8.16□□□□□ -1.1
LIG3-216ENST00000593099 LRRC75BQ2VPJ9 315 aa8.16□□□□□ -1.1
LIG3-216ENST00000593099 VKORC1L1Q8N0U8 176 aa8.16□□□□□ -1.1
LIG3-216ENST00000593099 OR4X1Q8NH49 305 aa8.16□□□□□ -1.1
LIG3-216ENST00000593099 FAM210BQ96KR6 192 aa8.16□□□□□ -1.1
LIG3-216ENST00000593099 OR4C12Q96R67 309 aa8.16□□□□□ -1.1
LIG3-216ENST00000593099 TBX15Q96SF7 602 aa8.16□□□□□ -1.1
LIG3-216ENST00000593099 ATP5SQ99766 215 aa8.16□□□□□ -1.1
LIG3-216ENST00000593099 H3BVH4 76 aa8.15□□□□□ -1.1
LIG3-216ENST00000593099 HIST1H1BP16401 226 aaKnown RBP8.15□□□□□ -1.1
LIG3-216ENST00000593099 SRD5A1P18405 259 aa8.15□□□□□ -1.1
LIG3-216ENST00000593099 ZNF90Q03938 601 aa8.15□□□□□ -1.1
LIG3-216ENST00000593099 LDLRAD2Q5SZI1 272 aa8.15□□□□□ -1.1
LIG3-216ENST00000593099 OR5B3Q8NH48 314 aa8.15□□□□□ -1.1
LIG3-216ENST00000593099 SSMEM1Q8WWF3 244 aa8.15□□□□□ -1.1
LIG3-216ENST00000593099 SPXQ9BT56 116 aa8.15□□□□□ -1.1
LIG3-216ENST00000593099 ANKRD11Q6UB99 2663 aaPredicted RBP8.15□□□□□ -1.1
LIG3-216ENST00000593099 IGKV3-7A0A075B6H7 116 aa8.15□□□□□ -1.1
LIG3-216ENST00000593099 SAA2-SAA4A0A096LPE2 208 aa8.15□□□□□ -1.1
LIG3-216ENST00000593099 IGHV2-26A0A0B4J1V2 119 aa8.15□□□□□ -1.1
LIG3-216ENST00000593099 LINC00862A6NCI5 91 aa8.15□□□□□ -1.1
LIG3-216ENST00000593099 NBR2O15453 112 aa8.15□□□□□ -1.1
LIG3-216ENST00000593099 SAA2P0DJI9 122 aaPredicted RBP8.15□□□□□ -1.1
LIG3-216ENST00000593099 CD37P11049 281 aa8.15□□□□□ -1.1
LIG3-216ENST00000593099 MMP9P14780 707 aa8.15□□□□□ -1.1
LIG3-216ENST00000593099 RABAC1Q9UI14 185 aa8.15□□□□□ -1.1
LIG3-216ENST00000593099 TRGV3P03979 118 aa8.15□□□□□ -1.1
LIG3-216ENST00000593099 PPP1R27Q86WC6 154 aa8.15□□□□□ -1.1
LIG3-216ENST00000593099 STPG2Q8N412 459 aa8.15□□□□□ -1.1
LIG3-216ENST00000593099 A0A0G2JLM5 398 aa8.15□□□□□ -1.11
LIG3-216ENST00000593099 OR4C46A6NHA9 309 aa8.15□□□□□ -1.11
LIG3-216ENST00000593099 TIMM23O14925 209 aa8.15□□□□□ -1.11
LIG3-216ENST00000593099 SFTA3P0C7M3 94 aa8.15□□□□□ -1.11
LIG3-216ENST00000593099 RND3P61587 244 aa8.15□□□□□ -1.11
LIG3-216ENST00000593099 EWSR1Q01844 656 aaKnown RBP eCLIP8.15□□□□□ -1.11
LIG3-216ENST00000593099 HS3ST6Q96QI5 342 aa8.15□□□□□ -1.11
LIG3-216ENST00000593099 GFI1Q99684 422 aa8.15□□□□□ -1.11
LIG3-216ENST00000593099 MEGF9Q9H1U4 602 aa8.15□□□□□ -1.11
LIG3-216ENST00000593099 NPVFQ9HCQ7 196 aa8.15□□□□□ -1.11
LIG3-216ENST00000593099 A0A1W2PS18 150 aa8.14□□□□□ -1.11
LIG3-216ENST00000593099 C7orf66A4D0T2 115 aa8.14□□□□□ -1.11
LIG3-216ENST00000593099 ZNF727A8MUV8 499 aa8.14□□□□□ -1.11
LIG3-216ENST00000593099 C17orf98A8MV24 154 aa8.14□□□□□ -1.11
LIG3-216ENST00000593099 RNASEK-C17orf49H0YIS7 233 aa8.14□□□□□ -1.11
LIG3-216ENST00000593099 CA2P00918 260 aa8.14□□□□□ -1.11
LIG3-216ENST00000593099 CNN1P51911 297 aaKnown RBP8.14□□□□□ -1.11
LIG3-216ENST00000593099 SELENOTP62341 195 aa8.14□□□□□ -1.11
LIG3-216ENST00000593099 EEF1AKMT3Q96AZ1 226 aa8.14□□□□□ -1.11
LIG3-216ENST00000593099 TVP23CQ96ET8 276 aa8.14□□□□□ -1.11
LIG3-216ENST00000593099 SGK494Q96LW2 274 aa8.14□□□□□ -1.11
LIG3-216ENST00000593099 TECRQ9NZ01 308 aaKnown RBP8.14□□□□□ -1.11
LIG3-216ENST00000593099 TRAV30A0A087WSZ9 112 aa8.14□□□□□ -1.11
LIG3-216ENST00000593099 MAPK1IP1LQ8NDC0 245 aa8.14□□□□□ -1.11
LIG3-216ENST00000593099 OR10G4Q8NGN3 311 aa8.14□□□□□ -1.11
LIG3-216ENST00000593099 OR10G9Q8NGN4 311 aa8.14□□□□□ -1.11
LIG3-216ENST00000593099 OR10G7Q8NGN6 311 aa8.14□□□□□ -1.11
LIG3-216ENST00000593099 ARPC1AQ92747 370 aa8.14□□□□□ -1.11
LIG3-216ENST00000593099 RBKSQ9H477 322 aa8.14□□□□□ -1.11
LIG3-216ENST00000593099 PLCE1Q9P212 2302 aa8.14□□□□□ -1.11
LIG3-216ENST00000593099 A0A0A6YYD4 124 aa8.14□□□□□ -1.11
LIG3-216ENST00000593099 HMSDA8MTL9 139 aa8.14□□□□□ -1.11
LIG3-216ENST00000593099 NPFFO15130 113 aa8.14□□□□□ -1.11
LIG3-216ENST00000593099 GCGP01275 180 aa8.14□□□□□ -1.11
LIG3-216ENST00000593099 WNT2P09544 360 aa8.14□□□□□ -1.11
LIG3-216ENST00000593099 PRTN3P24158 256 aa8.14□□□□□ -1.11
LIG3-216ENST00000593099 TNFRSF9Q07011 255 aa8.14□□□□□ -1.11
LIG3-216ENST00000593099 RSPO1Q2MKA7 263 aaPredicted RBP8.14□□□□□ -1.11
LIG3-216ENST00000593099 Q6P435 159 aa8.14□□□□□ -1.11
LIG3-216ENST00000593099 MALRD1Q5VYJ5 2156 aa8.14□□□□□ -1.11
LIG3-216ENST00000593099 CEP350Q5VT06 3117 aa8.14□□□□□ -1.11
LIG3-216ENST00000593099 CLDN34H7C241 214 aa8.14□□□□□ -1.11
LIG3-216ENST00000593099 KLRD1Q13241 179 aa8.14□□□□□ -1.11
LIG3-216ENST00000593099 TMEM187Q14656 261 aa8.14□□□□□ -1.11
LIG3-216ENST00000593099 DEFB113Q30KQ7 82 aa8.14□□□□□ -1.11
LIG3-216ENST00000593099 ANKRD55Q3KP44 614 aa8.14□□□□□ -1.11
LIG3-216ENST00000593099 GGACTQ9BVM4 153 aa8.14□□□□□ -1.11
LIG3-216ENST00000593099 REG4Q9BYZ8 158 aa8.14□□□□□ -1.11
LIG3-216ENST00000593099 CHD8Q9HCK8 2581 aa8.13□□□□□ -1.11
LIG3-216ENST00000593099 CSPG4Q6UVK1 2322 aa8.13□□□□□ -1.11
LIG3-216ENST00000593099 VDAC2P45880 294 aaPredicted RBP8.13□□□□□ -1.11
LIG3-216ENST00000593099 RND2P52198 227 aa8.13□□□□□ -1.11
LIG3-216ENST00000593099 UBE2L3P68036 154 aaKnown RBP8.13□□□□□ -1.11
LIG3-216ENST00000593099 FAM78BQ5VT40 261 aa8.13□□□□□ -1.11
LIG3-216ENST00000593099 BRD3OSQ6XYD6 125 aa8.13□□□□□ -1.11
LIG3-216ENST00000593099 RXFP4Q8TDU9 374 aa8.13□□□□□ -1.11
LIG3-216ENST00000593099 HYPMO75409 117 aa8.13□□□□□ -1.11
LIG3-216ENST00000593099 CD24P25063 80 aa8.13□□□□□ -1.11
LIG3-216ENST00000593099 UCP1P25874 307 aa8.13□□□□□ -1.11
LIG3-216ENST00000593099 GALR1P47211 349 aa8.13□□□□□ -1.11
LIG3-216ENST00000593099 RPEL1Q2QD12 228 aa8.13□□□□□ -1.11
LIG3-216ENST00000593099 C10orf113Q5VZT2 155 aa8.13□□□□□ -1.11
LIG3-216ENST00000593099 RBPMS2Q6ZRY4 209 aaKnown RBP8.13□□□□□ -1.11
LIG3-216ENST00000593099 STXBP6Q8NFX7 210 aa8.13□□□□□ -1.11
LIG3-216ENST00000593099 METTL26Q96S19 204 aa8.13□□□□□ -1.11
LIG3-216ENST00000593099 UQCR10Q9UDW1 63 aa8.13□□□□□ -1.11
LIG3-216ENST00000593099 MAP1LC3B2A6NCE7 125 aa8.13□□□□□ -1.11
LIG3-216ENST00000593099 DLEU1O43261 78 aa8.13□□□□□ -1.11
LIG3-216ENST00000593099 SLC25A5P05141 298 aaKnown RBP8.13□□□□□ -1.11
LIG3-216ENST00000593099 REG1AP05451 166 aa8.13□□□□□ -1.11
LIG3-216ENST00000593099 CXCL3P19876 107 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms