RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 FAM78BQ5VT40 261 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 C11orf71Q6IPW1 123 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 TMEM14EPQ6UXP3 125 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 ZNF818PQ6ZRF7 136 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 Q6ZWC4 215 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 LINC01551Q86U37 167 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 HAPLN4Q86UW8 402 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 C20orf196Q8IYI0 205 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 GAPTQ8N292 157 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 MUC15Q8N387 334 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 C17orf78Q8N4C9 275 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 C11orf42Q8N5U0 333 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 OR56B2PQ8NGI1 322 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 POC1BQ8TC44 478 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 DTD1Q8TEA8 209 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 DYRK2Q92630 601 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 RAB1CQ92928 201 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 RPUSD4Q96CM3 377 aaKnown RBP3.42□□□□□ -1.86
LIG3-211ENST00000588713 RASL10BQ96S79 203 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 B9D2Q9BPU9 175 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 KRTAP4-5Q9BYR2 181 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 KRTAP4-2Q9BYR5 136 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 RIMS4Q9H426 269 aaPredicted RBP3.42□□□□□ -1.86
LIG3-211ENST00000588713 ZNF442Q9H7R0 627 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 MSL2Q9HCI7 577 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 SLC7A10Q9NS82 523 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 SLC39A9Q9NUM3 307 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 ZNF581Q9P0T4 197 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 UQCR10Q9UDW1 63 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 PROCRQ9UNN8 238 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 ST3GAL6Q9Y274 331 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 WIPI2Q9Y4P8 454 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 TRAPPC1Q9Y5R8 145 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 ARL2-SNX15V9GYD0 113 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 FRAS1Q86XX4 4008 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 IGKV1-27A0A075B6S5 117 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 IGKV1-12A0A0C4DH73 117 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 IGHV1-69-2A0A0G2JMI3 117 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 A0A0G2JRQ6 117 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 C5orf63A6NC05 138 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 CD300LBA8K4G0 201 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 C11orf94C9JXX5 98 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 C17orf112F2Z3M2 114 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 F5H5K5 113 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 H3BP45 60 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 TNFSF11O14788 317 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 DNPH1O43598 174 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 ANGPTL7O43827 346 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 IGKV1D-33P01593 117 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 IGKV1-33P01594 117 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 IGKV1D-12P01611 117 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 REG1AP05451 166 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 SERPINE2P07093 398 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 SELEP16581 610 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 COX5AP20674 150 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 CD1BP29016 333 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 KIR2DL2P43627 348 aaPredicted RBP3.41□□□□□ -1.86
LIG3-211ENST00000588713 CDC34P49427 236 aaPredicted RBP3.41□□□□□ -1.86
LIG3-211ENST00000588713 FABP6P51161 128 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 HNRNPA3P51991 378 aaKnown RBP3.41□□□□□ -1.86
LIG3-211ENST00000588713 LINC00310P59036 64 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 UBE2G2P60604 165 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 FGF12P61328 243 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 MSMO1Q15800 293 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 PRSS8Q16651 343 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 SNAI3Q3KNW1 292 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 NRN1LQ496H8 165 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 SPIN3Q5JUX0 258 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 PLCXD3Q63HM9 321 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 ACSM6Q6P461 480 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 WDR73Q6P4I2 378 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 SMIM15Q7Z3B0 74 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 C1orf174Q8IYL3 243 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 TEX29Q8N6K0 151 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 KLHDC1Q8N7A1 406 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 FADS6Q8N9I5 356 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 NFAM1Q8NET5 270 aaPredicted RBP3.41□□□□□ -1.86
LIG3-211ENST00000588713 SLC24A4Q8NFF2 622 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 OR2M3Q8NG83 312 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 OR5AU1Q8NGC0 362 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 OR10V1Q8NGI7 309 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 OR4F5Q8NH21 305 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 OR5B3Q8NH48 314 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 TMEM37Q8WXS4 190 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 C11orf52Q96A22 123 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 SPSB4Q96A44 273 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 GPR146Q96CH1 333 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 SFRP2Q96HF1 295 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 KCNS1Q96KK3 526 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 FANCD2OSQ96PS1 177 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 OR4F4Q96R69 305 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 ULBP2Q9BZM5 246 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 VSIRQ9H7M9 311 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 SLC25A22Q9H936 323 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 PLEK2Q9NYT0 353 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 PSENENQ9NZ42 101 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 KLRF1Q9NZS2 232 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 CLCF1Q9UBD9 225 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 CACNG5Q9UF02 275 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 PAM16Q9Y3D7 125 aa3.41□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms