RNA–Protein interactions for RNA: ENST00000588323.1

VPS4B-203, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 3

Gene VPS4B, Length 463 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-203ENST00000588323 COA4Q9NYJ1 87 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 DOK5Q9P104 306 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 ZNF230Q9UIE0 474 aaPredicted RBP1.93□□□□□ -2.1
VPS4B-203ENST00000588323 CRYBG3Q68DQ2 2970 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 VWA8A3KMH1 1905 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 MED13LQ71F56 2210 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 JMJD1CQ15652 2540 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 ARHGAP21Q5T5U3 1957 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 TNRC6BQ9UPQ9 1833 aaKnown RBP1.92□□□□□ -2.1
VPS4B-203ENST00000588323 IGLV2-33A0A075B6J2 118 aaPredicted RBP1.92□□□□□ -2.1
VPS4B-203ENST00000588323 LOC102724200A0A096LPH7 203 aaPredicted RBP1.92□□□□□ -2.1
VPS4B-203ENST00000588323 TINCRA0A1B0GVN0 87 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 TMEM223A0PJW6 202 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 TMEM72A0PK05 275 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 SMIM9A6NGZ8 99 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 TRAPPC2LH3BP13 241 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 GYG2O15488 501 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 PDCD6O75340 191 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 POP7O75817 140 aaKnown RBP1.92□□□□□ -2.1
VPS4B-203ENST00000588323 SCO1O75880 301 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 ATG12O94817 140 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 OR2A4O95047 310 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 IGLV3-19P01714 112 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 HLA-DQA1P01909 254 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 APODP05090 189 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 CST2P09228 141 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 METTL15P1P0C7V9 234 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 C8orf88P0DMB2 117 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 ALOX5APP20292 161 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 HIST1H1TP22492 207 aaPredicted RBP1.92□□□□□ -2.1
VPS4B-203ENST00000588323 PRTN3P24158 256 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 CD34P28906 385 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 RPL12P30050 165 aaKnown RBP1.92□□□□□ -2.1
VPS4B-203ENST00000588323 MAP2K4P45985 399 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 SERPINB10P48595 397 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 KLF3P57682 345 aaPredicted RBP1.92□□□□□ -2.1
VPS4B-203ENST00000588323 GNG3P63215 75 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 MEF2CQ06413 473 aaPredicted RBP1.92□□□□□ -2.1
VPS4B-203ENST00000588323 APOFQ13790 326 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 EDDM3AQ14507 147 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 ZNF235Q14590 738 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 RSU1Q15404 277 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 SURF2Q15527 256 aaPredicted RBP1.92□□□□□ -2.1
VPS4B-203ENST00000588323 NEDD8Q15843 81 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 HLA-DRB5Q30154 266 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 DEFB116Q30KQ4 102 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 ACSBG2Q5FVE4 666 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 RNASE13Q5GAN3 156 aaKnown RBP1.92□□□□□ -2.1
VPS4B-203ENST00000588323 UBE2NLQ5JXB2 153 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 FAM162BQ5T6X4 162 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 PRNTQ86SH4 94 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 GALNT10Q86SR1 603 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 CPNE9Q8IYJ1 553 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 OR4P4Q8NGL7 312 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 EEF1AKMT1Q8WVE0 214 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 CYGBQ8WWM9 190 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 MBD3L1Q8WWY6 194 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 DCUN1D1Q96GG9 259 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 OR2A7Q96R45 310 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 MED18Q9BUE0 208 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 GGACTQ9BVM4 153 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 RSPO3Q9BXY4 272 aaPredicted RBP1.92□□□□□ -2.1
VPS4B-203ENST00000588323 TLNRD1Q9H1K6 362 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 OR51E2Q9H255 320 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 MIXL1Q9H2W2 232 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 TXNIPQ9H3M7 391 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 FBXL15Q9H469 300 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 Q9H521 79 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 EFCAB1Q9HAE3 211 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 ZNF331Q9NQX6 463 aaPredicted RBP1.92□□□□□ -2.1
VPS4B-203ENST00000588323 CISHQ9NSE2 258 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 SPANXCQ9NY87 97 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 RBM12B-AS1Q9P1G2 102 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 CCL26Q9Y258 94 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 SBDSQ9Y3A5 250 aaKnown RBP eCLIP1.92□□□□□ -2.1
VPS4B-203ENST00000588323 TMEM14AQ9Y6G1 99 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 WSB1Q9Y6I7 421 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 ZNF780BQ9Y6R6 833 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 COL6A5A8TX70 2615 aa1.92□□□□□ -2.1
VPS4B-203ENST00000588323 PLXND1Q9Y4D7 1925 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 TMEM131Q92545 1883 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 A0A096LPI6 279 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 IGHV3-49A0A0A0MS15 119 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 TRAV8-3A0A0A6YYJ7 113 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 MAP1LC3B2A6NCE7 125 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 FAM183AA6NL82 134 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 FFAR1O14842 300 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 RGS5O15539 181 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 TCF21O43680 179 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 SLC37A4O43826 429 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 COX7A2P2O60397 106 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 SOX14O95416 240 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 IGLV3-25P01717 112 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 CECR9P0C854 216 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 CD99P14209 185 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 GZMHP20718 246 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 SLC6A1P30531 599 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 ARPP19P56211 112 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 NCALDP61601 193 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 TBPL1P62380 186 aa1.91□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms