RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 DERL1Q9BUN8 251 aa1.33□□□□□ -2.2
SMCHD1-209ENST00000583441 C20orf27Q9GZN8 174 aa1.33□□□□□ -2.2
SMCHD1-209ENST00000583441 OR51V1Q9H2C8 321 aa1.33□□□□□ -2.2
SMCHD1-209ENST00000583441 CTNNBIP1Q9NSA3 81 aaPredicted RBP1.33□□□□□ -2.2
SMCHD1-209ENST00000583441 FBXL12Q9NXK8 326 aa1.33□□□□□ -2.2
SMCHD1-209ENST00000583441 MRPL27Q9P0M9 148 aaKnown RBP1.33□□□□□ -2.2
SMCHD1-209ENST00000583441 AMMECR1Q9Y4X0 333 aaPredicted RBP1.33□□□□□ -2.2
SMCHD1-209ENST00000583441 TMEM56-RWDD3S4R434 201 aa1.33□□□□□ -2.2
SMCHD1-209ENST00000583441 V9GYY5 206 aaPredicted RBP1.33□□□□□ -2.2
SMCHD1-209ENST00000583441 NUP155O75694 1391 aa1.33□□□□□ -2.2
SMCHD1-209ENST00000583441 SCN9AQ15858 1988 aa1.32□□□□□ -2.2
SMCHD1-209ENST00000583441 ARHGAP32A7KAX9 2087 aa1.32□□□□□ -2.2
SMCHD1-209ENST00000583441 SIPA1L1O43166 1804 aa1.32□□□□□ -2.2
SMCHD1-209ENST00000583441 RPS17P08708 135 aaKnown RBP1.32□□□□□ -2.2
SMCHD1-209ENST00000583441 RPSAP08865 295 aaKnown RBP1.32□□□□□ -2.2
SMCHD1-209ENST00000583441 GPX2P18283 190 aa1.32□□□□□ -2.2
SMCHD1-209ENST00000583441 MYL6P60660 151 aa1.32□□□□□ -2.2
SMCHD1-209ENST00000583441 AESQ08117 197 aa1.32□□□□□ -2.2
SMCHD1-209ENST00000583441 EDDM3AQ14507 147 aa1.32□□□□□ -2.2
SMCHD1-209ENST00000583441 Q1T7F1 81 aa1.32□□□□□ -2.2
SMCHD1-209ENST00000583441 ARHGAP11BQ3KRB8 267 aa1.32□□□□□ -2.2
SMCHD1-209ENST00000583441 AKIRIN2Q53H80 203 aa1.32□□□□□ -2.2
SMCHD1-209ENST00000583441 KLK6Q92876 244 aa1.32□□□□□ -2.2
SMCHD1-209ENST00000583441 TOMM6Q96B49 74 aa1.32□□□□□ -2.2
SMCHD1-209ENST00000583441 C8orf76Q96K31 380 aa1.32□□□□□ -2.2
SMCHD1-209ENST00000583441 CMSS1Q9BQ75 279 aaKnown RBP1.32□□□□□ -2.2
SMCHD1-209ENST00000583441 MRPL32Q9BYC8 188 aaKnown RBP1.32□□□□□ -2.2
SMCHD1-209ENST00000583441 CMTM6Q9NX76 183 aa1.32□□□□□ -2.2
SMCHD1-209ENST00000583441 BAIAP2Q9UQB8 552 aa1.32□□□□□ -2.2
SMCHD1-209ENST00000583441 SLC22A13Q9Y226 551 aa1.32□□□□□ -2.2
SMCHD1-209ENST00000583441 DOCK10Q96BY6 2186 aa1.32□□□□□ -2.2
SMCHD1-209ENST00000583441 MDC1Q14676 2089 aaKnown RBP1.31□□□□□ -2.2
SMCHD1-209ENST00000583441 TRAV9-1A0A075B6T8 112 aa1.31□□□□□ -2.2
SMCHD1-209ENST00000583441 TRBV6-5A0A0K0K1A5 114 aa1.31□□□□□ -2.2
SMCHD1-209ENST00000583441 OR4C46A6NHA9 309 aa1.31□□□□□ -2.2
SMCHD1-209ENST00000583441 IBA57-AS1B1ANH7 110 aa1.31□□□□□ -2.2
SMCHD1-209ENST00000583441 FAAHO00519 579 aa1.31□□□□□ -2.2
SMCHD1-209ENST00000583441 LYPLA2O95372 231 aa1.31□□□□□ -2.2
SMCHD1-209ENST00000583441 CRPP02741 224 aa1.31□□□□□ -2.2
SMCHD1-209ENST00000583441 RPL5P46777 297 aaKnown RBP1.31□□□□□ -2.2
SMCHD1-209ENST00000583441 EIF2B2P49770 351 aaKnown RBP1.31□□□□□ -2.2
SMCHD1-209ENST00000583441 HIST1H3AP68431 136 aa1.31□□□□□ -2.2
SMCHD1-209ENST00000583441 H3F3AP84243 136 aa1.31□□□□□ -2.2
SMCHD1-209ENST00000583441 KCNJ8Q15842 424 aa1.31□□□□□ -2.2
SMCHD1-209ENST00000583441 MOGQ16653 247 aa1.31□□□□□ -2.2
SMCHD1-209ENST00000583441 IAH1Q2TAA2 248 aaPredicted RBP1.31□□□□□ -2.2
SMCHD1-209ENST00000583441 OR6V1Q8N148 313 aa1.31□□□□□ -2.2
SMCHD1-209ENST00000583441 ZNF565Q8N9K5 539 aa1.31□□□□□ -2.2
SMCHD1-209ENST00000583441 OR5B17Q8NGF7 314 aa1.31□□□□□ -2.2
SMCHD1-209ENST00000583441 Q96M85 177 aa1.31□□□□□ -2.2
SMCHD1-209ENST00000583441 SCGB3A1Q96QR1 104 aa1.31□□□□□ -2.2
SMCHD1-209ENST00000583441 TSPAN32Q96QS1 320 aa1.31□□□□□ -2.2
SMCHD1-209ENST00000583441 YIPF3Q9GZM5 350 aa1.31□□□□□ -2.2
SMCHD1-209ENST00000583441 DPRXA6NFQ7 191 aa1.3□□□□□ -2.2
SMCHD1-209ENST00000583441 TRAPPC2LH3BP13 241 aa1.3□□□□□ -2.2
SMCHD1-209ENST00000583441 CRYZL1O95825 349 aa1.3□□□□□ -2.2
SMCHD1-209ENST00000583441 IGKV1-5P01602 117 aa1.3□□□□□ -2.2
SMCHD1-209ENST00000583441 PMP2P02689 132 aa1.3□□□□□ -2.2
SMCHD1-209ENST00000583441 TCRBP04435 133 aa1.3□□□□□ -2.2
SMCHD1-209ENST00000583441 SUPT4H1P63272 117 aaKnown RBP1.3□□□□□ -2.2
SMCHD1-209ENST00000583441 CCL7P80098 99 aa1.3□□□□□ -2.2
SMCHD1-209ENST00000583441 SRSF6Q13247 344 aaKnown RBP1.3□□□□□ -2.2
SMCHD1-209ENST00000583441 ZNF345Q14585 488 aa1.3□□□□□ -2.2
SMCHD1-209ENST00000583441 SPA17Q15506 151 aa1.3□□□□□ -2.2
SMCHD1-209ENST00000583441 NNATQ16517 81 aa1.3□□□□□ -2.2
SMCHD1-209ENST00000583441 FAM173BQ6P4H8 233 aa1.3□□□□□ -2.2
SMCHD1-209ENST00000583441 FP248Q71RG6 208 aaPredicted RBP1.3□□□□□ -2.2
SMCHD1-209ENST00000583441 AAED1Q7RTV5 226 aa1.3□□□□□ -2.2
SMCHD1-209ENST00000583441 DEFB128Q7Z7B8 93 aa1.3□□□□□ -2.2
SMCHD1-209ENST00000583441 TRIM4Q9C037 500 aa1.3□□□□□ -2.2
SMCHD1-209ENST00000583441 MED9Q9NWA0 146 aa1.3□□□□□ -2.2
SMCHD1-209ENST00000583441 CKLFQ9UBR5 152 aa1.3□□□□□ -2.2
SMCHD1-209ENST00000583441 PKIGQ9Y2B9 76 aa1.3□□□□□ -2.2
SMCHD1-209ENST00000583441 LHFPL6Q9Y693 200 aa1.3□□□□□ -2.2
SMCHD1-209ENST00000583441 GBF1Q92538 1859 aa1.29□□□□□ -2.2
SMCHD1-209ENST00000583441 NCKAP5O14513 1909 aa1.29□□□□□ -2.2
SMCHD1-209ENST00000583441 A0A087WUJ7 227 aa1.29□□□□□ -2.2
SMCHD1-209ENST00000583441 TRAV26-2A0A0B4J265 109 aa1.29□□□□□ -2.2
SMCHD1-209ENST00000583441 A0A0D9SG52 128 aa1.29□□□□□ -2.2
SMCHD1-209ENST00000583441 EXOC1LA0A1B0GW35 172 aa1.29□□□□□ -2.2
SMCHD1-209ENST00000583441 FUOMA2VDF0 154 aa1.29□□□□□ -2.2
SMCHD1-209ENST00000583441 PIRO00625 290 aa1.29□□□□□ -2.2
SMCHD1-209ENST00000583441 MRPS14O60783 128 aaKnown RBP1.29□□□□□ -2.2
SMCHD1-209ENST00000583441 HTR1AP08908 422 aa1.29□□□□□ -2.2
SMCHD1-209ENST00000583441 RBP1P09455 135 aa1.29□□□□□ -2.2
SMCHD1-209ENST00000583441 ARL14EPLP0DKL9 152 aa1.29□□□□□ -2.2
SMCHD1-209ENST00000583441 LSM6P62312 80 aaKnown RBP1.29□□□□□ -2.2
SMCHD1-209ENST00000583441 LINC00471Q8N535 108 aa1.29□□□□□ -2.2
SMCHD1-209ENST00000583441 C9orf163Q8N9P6 203 aa1.29□□□□□ -2.2
SMCHD1-209ENST00000583441 WFDC11Q8NEX6 87 aa1.29□□□□□ -2.2
SMCHD1-209ENST00000583441 PFN4Q8NHR9 129 aa1.29□□□□□ -2.2
SMCHD1-209ENST00000583441 GINS4Q9BRT9 223 aa1.29□□□□□ -2.2
SMCHD1-209ENST00000583441 CCDC90BQ9GZT6 254 aa1.29□□□□□ -2.2
SMCHD1-209ENST00000583441 DCSTAMPQ9H295 470 aa1.29□□□□□ -2.2
SMCHD1-209ENST00000583441 MTUS2Q5JR59 1369 aa1.29□□□□□ -2.2
SMCHD1-209ENST00000583441 WRNQ14191 1432 aaPredicted RBP eCLIP1.29□□□□□ -2.2
SMCHD1-209ENST00000583441 NCOA1Q15788 1441 aa1.29□□□□□ -2.2
SMCHD1-209ENST00000583441 SMARCA4P51532 1647 aa1.29□□□□□ -2.2
SMCHD1-209ENST00000583441 TMEM114B3SHH9 223 aa1.28□□□□□ -2.2
SMCHD1-209ENST00000583441 C19orf84I3L1E1 186 aa1.28□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms