RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 Q6ZS49 121 aa1.15□□□□□ -2.23
SMCHD1-204ENST00000581226 LRRC25Q8N386 305 aaPredicted RBP1.15□□□□□ -2.23
SMCHD1-204ENST00000581226 CLDN22Q8N7P3 220 aa1.15□□□□□ -2.23
SMCHD1-204ENST00000581226 ZNF676Q8N7Q3 588 aa1.15□□□□□ -2.23
SMCHD1-204ENST00000581226 SLC7A6Q92536 515 aa1.15□□□□□ -2.23
SMCHD1-204ENST00000581226 DERL1Q9BUN8 251 aa1.15□□□□□ -2.23
SMCHD1-204ENST00000581226 ROBO3Q96MS0 1386 aa1.15□□□□□ -2.23
SMCHD1-204ENST00000581226 KMT2BQ9UMN6 2715 aaPredicted RBP1.14□□□□□ -2.23
SMCHD1-204ENST00000581226 GGT3PA6NGU5 568 aa1.14□□□□□ -2.23
SMCHD1-204ENST00000581226 HMSDA8MTL9 139 aa1.14□□□□□ -2.23
SMCHD1-204ENST00000581226 CREBL2O60519 120 aaPredicted RBP1.14□□□□□ -2.23
SMCHD1-204ENST00000581226 HLA-DRB1P01911 266 aa1.14□□□□□ -2.23
SMCHD1-204ENST00000581226 TNNC2P02585 160 aa1.14□□□□□ -2.23
SMCHD1-204ENST00000581226 SHBGP04278 402 aa1.14□□□□□ -2.23
SMCHD1-204ENST00000581226 MSMBP08118 114 aa1.14□□□□□ -2.23
SMCHD1-204ENST00000581226 SULT1A3P0DMM9 295 aa1.14□□□□□ -2.23
SMCHD1-204ENST00000581226 SULT1A4P0DMN0 295 aa1.14□□□□□ -2.23
SMCHD1-204ENST00000581226 SULT1A1P50225 295 aa1.14□□□□□ -2.23
SMCHD1-204ENST00000581226 EMP1P54849 157 aa1.14□□□□□ -2.23
SMCHD1-204ENST00000581226 DEFA1P59665 94 aa1.14□□□□□ -2.23
SMCHD1-204ENST00000581226 KCNJ8Q15842 424 aa1.14□□□□□ -2.23
SMCHD1-204ENST00000581226 Q1T7F1 81 aa1.14□□□□□ -2.23
SMCHD1-204ENST00000581226 CCDC122Q5T0U0 273 aa1.14□□□□□ -2.23
SMCHD1-204ENST00000581226 SLC36A1Q7Z2H8 476 aa1.14□□□□□ -2.23
SMCHD1-204ENST00000581226 MNS1Q8NEH6 495 aa1.14□□□□□ -2.23
SMCHD1-204ENST00000581226 Q96M85 177 aa1.14□□□□□ -2.23
SMCHD1-204ENST00000581226 PRAP1Q96NZ9 151 aa1.14□□□□□ -2.23
SMCHD1-204ENST00000581226 TSPAN32Q96QS1 320 aa1.14□□□□□ -2.23
SMCHD1-204ENST00000581226 RETNLBQ9BQ08 111 aa1.14□□□□□ -2.23
SMCHD1-204ENST00000581226 VPS29Q9UBQ0 182 aa1.14□□□□□ -2.23
SMCHD1-204ENST00000581226 LHFPL6Q9Y693 200 aa1.14□□□□□ -2.23
SMCHD1-204ENST00000581226 ARFGEF3Q5TH69 2177 aa1.13□□□□□ -2.23
SMCHD1-204ENST00000581226 TRBV10-2A0A0K0K1G8 114 aa1.13□□□□□ -2.23
SMCHD1-204ENST00000581226 FAM236DA0A1B0GTK5 79 aa1.13□□□□□ -2.23
SMCHD1-204ENST00000581226 SMIM9A6NGZ8 99 aa1.13□□□□□ -2.23
SMCHD1-204ENST00000581226 FAM236CP0DP71 79 aa1.13□□□□□ -2.23
SMCHD1-204ENST00000581226 CDKN2CP42773 168 aa1.13□□□□□ -2.23
SMCHD1-204ENST00000581226 ZNF80P51504 273 aaPredicted RBP1.13□□□□□ -2.23
SMCHD1-204ENST00000581226 ERVS71-1P61550 626 aa1.13□□□□□ -2.23
SMCHD1-204ENST00000581226 AESQ08117 197 aa1.13□□□□□ -2.23
SMCHD1-204ENST00000581226 GRK1Q15835 563 aa1.13□□□□□ -2.23
SMCHD1-204ENST00000581226 ARHGAP11BQ3KRB8 267 aa1.13□□□□□ -2.23
SMCHD1-204ENST00000581226 AADACL3Q5VUY0 350 aa1.13□□□□□ -2.23
SMCHD1-204ENST00000581226 LPCAT3Q6P1A2 487 aa1.13□□□□□ -2.23
SMCHD1-204ENST00000581226 FAM173BQ6P4H8 233 aa1.13□□□□□ -2.23
SMCHD1-204ENST00000581226 MRPL30Q8TCC3 161 aaKnown RBP1.13□□□□□ -2.23
SMCHD1-204ENST00000581226 C8orf76Q96K31 380 aa1.13□□□□□ -2.23
SMCHD1-204ENST00000581226 CCDC42Q96M95 316 aa1.13□□□□□ -2.23
SMCHD1-204ENST00000581226 OR52E6Q96RD3 313 aa1.13□□□□□ -2.23
SMCHD1-204ENST00000581226 CYSTM1Q9H1C7 97 aa1.13□□□□□ -2.23
SMCHD1-204ENST00000581226 FBXL12Q9NXK8 326 aa1.13□□□□□ -2.23
SMCHD1-204ENST00000581226 FLG2Q5D862 2391 aaPredicted RBP1.13□□□□□ -2.23
SMCHD1-204ENST00000581226 ANAPC1Q9H1A4 1944 aa1.13□□□□□ -2.23
SMCHD1-204ENST00000581226 ECM29Q5VYK3 1845 aa1.12□□□□□ -2.23
SMCHD1-204ENST00000581226 EXPH5Q8NEV8 1989 aa1.12□□□□□ -2.23
SMCHD1-204ENST00000581226 TONSLQ96HA7 1378 aa1.12□□□□□ -2.23
SMCHD1-204ENST00000581226 TRBV6-5A0A0K0K1A5 114 aa1.12□□□□□ -2.23
SMCHD1-204ENST00000581226 A0A1B0GV50 99 aa1.12□□□□□ -2.23
SMCHD1-204ENST00000581226 MEIS3P1A6NDR6 274 aa1.12□□□□□ -2.23
SMCHD1-204ENST00000581226 FABP5P3A8MUU1 101 aa1.12□□□□□ -2.23
SMCHD1-204ENST00000581226 CNIH1O95406 144 aa1.12□□□□□ -2.23
SMCHD1-204ENST00000581226 TTRP02766 147 aa1.12□□□□□ -2.23
SMCHD1-204ENST00000581226 TRGC1P0CF51 173 aa1.12□□□□□ -2.23
SMCHD1-204ENST00000581226 G6PCP35575 357 aa1.12□□□□□ -2.23
SMCHD1-204ENST00000581226 IBA57Q5T440 356 aaKnown RBP1.12□□□□□ -2.23
SMCHD1-204ENST00000581226 C7orf65Q6ZTY9 151 aa1.12□□□□□ -2.23
SMCHD1-204ENST00000581226 C20orf196Q8IYI0 205 aa1.12□□□□□ -2.23
SMCHD1-204ENST00000581226 C12orf45Q8N5I9 185 aaPredicted RBP1.12□□□□□ -2.23
SMCHD1-204ENST00000581226 NIPSNAP1Q9BPW8 284 aa1.12□□□□□ -2.23
SMCHD1-204ENST00000581226 DOHHQ9BU89 302 aa1.12□□□□□ -2.23
SMCHD1-204ENST00000581226 C11orf68Q9H3H3 251 aaKnown RBP1.12□□□□□ -2.23
SMCHD1-204ENST00000581226 SOX21Q9Y651 276 aaPredicted RBP1.12□□□□□ -2.23
SMCHD1-204ENST00000581226 NEO1Q92859 1461 aa1.12□□□□□ -2.23
SMCHD1-204ENST00000581226 NUP155O75694 1391 aa1.11□□□□□ -2.23
SMCHD1-204ENST00000581226 DLG5Q8TDM6 1919 aa1.11□□□□□ -2.23
SMCHD1-204ENST00000581226 TRAV26-2A0A0B4J265 109 aa1.11□□□□□ -2.23
SMCHD1-204ENST00000581226 PQLC2LA1A4F0 135 aa1.11□□□□□ -2.23
SMCHD1-204ENST00000581226 OR4C46A6NHA9 309 aa1.11□□□□□ -2.23
SMCHD1-204ENST00000581226 BUB1B-PAK6H3BSN5 160 aa1.11□□□□□ -2.23
SMCHD1-204ENST00000581226 NOS1APO75052 506 aaPredicted RBP1.11□□□□□ -2.23
SMCHD1-204ENST00000581226 E2F6O75461 281 aa1.11□□□□□ -2.23
SMCHD1-204ENST00000581226 CTXN2P0C2S0 81 aa1.11□□□□□ -2.23
SMCHD1-204ENST00000581226 CD79AP11912 226 aa1.11□□□□□ -2.23
SMCHD1-204ENST00000581226 RPS4Y1P22090 263 aaKnown RBP1.11□□□□□ -2.23
SMCHD1-204ENST00000581226 HAAOP46952 286 aa1.11□□□□□ -2.23
SMCHD1-204ENST00000581226 PSME3P61289 254 aa1.11□□□□□ -2.23
SMCHD1-204ENST00000581226 HIST1H4AP62805 103 aaKnown RBP1.11□□□□□ -2.23
SMCHD1-204ENST00000581226 FP248Q71RG6 208 aaPredicted RBP1.11□□□□□ -2.23
SMCHD1-204ENST00000581226 TRAPPC5Q8IUR0 188 aa1.11□□□□□ -2.23
SMCHD1-204ENST00000581226 C15orf53Q8NAA6 179 aa1.11□□□□□ -2.23
SMCHD1-204ENST00000581226 OR52R1Q8NGF1 315 aa1.11□□□□□ -2.23
SMCHD1-204ENST00000581226 PFN4Q8NHR9 129 aa1.11□□□□□ -2.23
SMCHD1-204ENST00000581226 RASSF5Q8WWW0 418 aa1.11□□□□□ -2.23
SMCHD1-204ENST00000581226 CTNNBIP1Q9NSA3 81 aaPredicted RBP1.11□□□□□ -2.23
SMCHD1-204ENST00000581226 BAIAP2Q9UQB8 552 aa1.11□□□□□ -2.23
SMCHD1-204ENST00000581226 CCDC144AA2RUR9 1427 aa1.11□□□□□ -2.23
SMCHD1-204ENST00000581226 ALPK2Q86TB3 2170 aa1.11□□□□□ -2.23
SMCHD1-204ENST00000581226 DIDO1Q9BTC0 2240 aaKnown RBP1.11□□□□□ -2.23
SMCHD1-204ENST00000581226 TOPBP1Q92547 1522 aa1.1□□□□□ -2.23
SMCHD1-204ENST00000581226 IGKV2-40A0A087WW87 121 aaPredicted RBP1.1□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms