RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 HIST2H2BDQ6DRA6 164 aa7.41□□□□□ -1.22
CCDC40-214ENST00000575431 ZNF343Q6P1L6 599 aa7.41□□□□□ -1.22
CCDC40-214ENST00000575431 C18orf65Q6ZTR6 163 aa7.41□□□□□ -1.22
CCDC40-214ENST00000575431 LYG2Q86SG7 212 aa7.41□□□□□ -1.22
CCDC40-214ENST00000575431 OR2C3Q8N628 320 aa7.41□□□□□ -1.22
CCDC40-214ENST00000575431 ZNF114Q8NC26 417 aa7.41□□□□□ -1.22
CCDC40-214ENST00000575431 OR10W1Q8NGF6 305 aa7.41□□□□□ -1.22
CCDC40-214ENST00000575431 ENKURQ8TC29 256 aa7.41□□□□□ -1.22
CCDC40-214ENST00000575431 CASTOR1Q8WTX7 329 aa7.41□□□□□ -1.22
CCDC40-214ENST00000575431 GPR146Q96CH1 333 aa7.41□□□□□ -1.22
CCDC40-214ENST00000575431 RCC1LQ96I51 464 aaKnown RBP7.41□□□□□ -1.22
CCDC40-214ENST00000575431 RAX2Q96IS3 184 aa7.41□□□□□ -1.22
CCDC40-214ENST00000575431 FANCD2OSQ96PS1 177 aa7.41□□□□□ -1.22
CCDC40-214ENST00000575431 ATP6V0BQ99437 205 aa7.41□□□□□ -1.22
CCDC40-214ENST00000575431 GNB4Q9HAV0 340 aa7.41□□□□□ -1.22
CCDC40-214ENST00000575431 CACNG5Q9UF02 275 aa7.41□□□□□ -1.22
CCDC40-214ENST00000575431 FBXL7Q9UJT9 491 aa7.41□□□□□ -1.22
CCDC40-214ENST00000575431 F11RQ9Y624 299 aaKnown RBP7.41□□□□□ -1.22
CCDC40-214ENST00000575431 A0A0G2JRQ6 117 aa7.4□□□□□ -1.22
CCDC40-214ENST00000575431 LINC01619G3V211 115 aa7.4□□□□□ -1.22
CCDC40-214ENST00000575431 OR2J3O76001 311 aa7.4□□□□□ -1.22
CCDC40-214ENST00000575431 IFNA21P01568 189 aa7.4□□□□□ -1.22
CCDC40-214ENST00000575431 IGHV3-11P01762 117 aa7.4□□□□□ -1.22
CCDC40-214ENST00000575431 H2AFB2P0C5Z0 115 aa7.4□□□□□ -1.22
CCDC40-214ENST00000575431 DHRS2Q13268 280 aa7.4□□□□□ -1.22
CCDC40-214ENST00000575431 SMCO1Q147U7 214 aa7.4□□□□□ -1.22
CCDC40-214ENST00000575431 TATDN3Q17R31 274 aa7.4□□□□□ -1.22
CCDC40-214ENST00000575431 IZUMO4Q1ZYL8 232 aa7.4□□□□□ -1.22
CCDC40-214ENST00000575431 C15orf32Q32M92 178 aa7.4□□□□□ -1.22
CCDC40-214ENST00000575431 NMSQ5H8A3 153 aa7.4□□□□□ -1.22
CCDC40-214ENST00000575431 SLC25A24Q6NUK1 477 aa7.4□□□□□ -1.22
CCDC40-214ENST00000575431 ETV3LQ6ZN32 361 aa7.4□□□□□ -1.22
CCDC40-214ENST00000575431 Q6ZRM9 215 aa7.4□□□□□ -1.22
CCDC40-214ENST00000575431 LYZL2Q7Z4W2 148 aa7.4□□□□□ -1.22
CCDC40-214ENST00000575431 LINC00482Q8N8I6 264 aa7.4□□□□□ -1.22
CCDC40-214ENST00000575431 OR1P1Q8NH06 330 aa7.4□□□□□ -1.22
CCDC40-214ENST00000575431 VN1R17PQ8TDU5 208 aa7.4□□□□□ -1.22
CCDC40-214ENST00000575431 EEF1AKMT3Q96AZ1 226 aa7.4□□□□□ -1.22
CCDC40-214ENST00000575431 OR5B12Q96R08 314 aa7.4□□□□□ -1.22
CCDC40-214ENST00000575431 NUDT15Q9NV35 164 aa7.4□□□□□ -1.22
CCDC40-214ENST00000575431 GAR1Q9NY12 217 aaKnown RBP7.4□□□□□ -1.22
CCDC40-214ENST00000575431 PEF1Q9UBV8 284 aaKnown RBP7.4□□□□□ -1.22
CCDC40-214ENST00000575431 TBC1D24Q9ULP9 559 aa7.4□□□□□ -1.22
CCDC40-214ENST00000575431 FLVCR2Q9UPI3 526 aa7.4□□□□□ -1.22
CCDC40-214ENST00000575431 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP7.39□□□□□ -1.23
CCDC40-214ENST00000575431 TRBV7-1A0A0A6YYK4 115 aa7.39□□□□□ -1.23
CCDC40-214ENST00000575431 FAM90A26D6RGX4 464 aa7.39□□□□□ -1.23
CCDC40-214ENST00000575431 LY86O95711 162 aa7.39□□□□□ -1.23
CCDC40-214ENST00000575431 PRH1P02810 166 aa7.39□□□□□ -1.23
CCDC40-214ENST00000575431 REG1AP05451 166 aa7.39□□□□□ -1.23
CCDC40-214ENST00000575431 ANXA7P20073 488 aaKnown RBP7.39□□□□□ -1.23
CCDC40-214ENST00000575431 HOXA1P49639 335 aaPredicted RBP7.39□□□□□ -1.23
CCDC40-214ENST00000575431 ATP5IP56385 69 aaPredicted RBP7.39□□□□□ -1.23
CCDC40-214ENST00000575431 IFITM3Q01628 133 aa7.39□□□□□ -1.23
CCDC40-214ENST00000575431 EXOSC2Q13868 293 aaKnown RBP7.39□□□□□ -1.23
CCDC40-214ENST00000575431 DEFB136Q30KP8 78 aa7.39□□□□□ -1.23
CCDC40-214ENST00000575431 ANKRD55Q3KP44 614 aa7.39□□□□□ -1.23
CCDC40-214ENST00000575431 NOXA1Q86UR1 476 aa7.39□□□□□ -1.23
CCDC40-214ENST00000575431 DUSP18Q8NEJ0 188 aa7.39□□□□□ -1.23
CCDC40-214ENST00000575431 MITD1Q8WV92 249 aa7.39□□□□□ -1.23
CCDC40-214ENST00000575431 HIPK2Q9H2X6 1198 aa7.39□□□□□ -1.23
CCDC40-214ENST00000575431 ZMAT5Q9UDW3 170 aaKnown RBP7.39□□□□□ -1.23
CCDC40-214ENST00000575431 TENM1Q9UKZ4 2725 aa7.38□□□□□ -1.23
CCDC40-214ENST00000575431 TRAV6A0A075B6T7 132 aa7.38□□□□□ -1.23
CCDC40-214ENST00000575431 CEBPZOSA8MTT3 80 aa7.38□□□□□ -1.23
CCDC40-214ENST00000575431 PITX3O75364 302 aa7.38□□□□□ -1.23
CCDC40-214ENST00000575431 MED6O75586 246 aa7.38□□□□□ -1.23
CCDC40-214ENST00000575431 NDUFB8O95169 186 aa7.38□□□□□ -1.23
CCDC40-214ENST00000575431 IL5P05113 134 aa7.38□□□□□ -1.23
CCDC40-214ENST00000575431 HTR2BP41595 481 aa7.38□□□□□ -1.23
CCDC40-214ENST00000575431 PLET1Q6UQ28 207 aa7.38□□□□□ -1.23
CCDC40-214ENST00000575431 OR1S1Q8NH92 325 aa7.38□□□□□ -1.23
CCDC40-214ENST00000575431 GPN1Q9HCN4 374 aaPredicted RBP7.38□□□□□ -1.23
CCDC40-214ENST00000575431 PALMDQ9NP74 551 aa7.38□□□□□ -1.23
CCDC40-214ENST00000575431 PRR13Q9NZ81 148 aa7.38□□□□□ -1.23
CCDC40-214ENST00000575431 HSPB7Q9UBY9 170 aa7.38□□□□□ -1.23
CCDC40-214ENST00000575431 IGHV4OR15-8A0A075B7B6 117 aa7.37□□□□□ -1.23
CCDC40-214ENST00000575431 A0A087WW49 117 aa7.37□□□□□ -1.23
CCDC40-214ENST00000575431 ANKRD34BA5PLL1 514 aa7.37□□□□□ -1.23
CCDC40-214ENST00000575431 OVOL1O14753 267 aa7.37□□□□□ -1.23
CCDC40-214ENST00000575431 PRAF2O60831 178 aa7.37□□□□□ -1.23
CCDC40-214ENST00000575431 GGCTO75223 188 aaKnown RBP7.37□□□□□ -1.23
CCDC40-214ENST00000575431 HOXB5P09067 269 aa7.37□□□□□ -1.23
CCDC40-214ENST00000575431 INSL3P51460 131 aa7.37□□□□□ -1.23
CCDC40-214ENST00000575431 TNFRSF9Q07011 255 aa7.37□□□□□ -1.23
CCDC40-214ENST00000575431 RPEL1Q2QD12 228 aa7.37□□□□□ -1.23
CCDC40-214ENST00000575431 BSXQ3C1V8 233 aa7.37□□□□□ -1.23
CCDC40-214ENST00000575431 GGNBP1Q5YKI7 109 aa7.37□□□□□ -1.23
CCDC40-214ENST00000575431 NRARPQ7Z6K4 114 aa7.37□□□□□ -1.23
CCDC40-214ENST00000575431 ZNF431Q8TF32 576 aaPredicted RBP7.37□□□□□ -1.23
CCDC40-214ENST00000575431 DUX3Q96PT4 197 aa7.37□□□□□ -1.23
CCDC40-214ENST00000575431 CIB3Q96Q77 187 aaPredicted RBP7.37□□□□□ -1.23
CCDC40-214ENST00000575431 TXN2Q99757 166 aa7.37□□□□□ -1.23
CCDC40-214ENST00000575431 HEYLQ9NQ87 328 aaPredicted RBP7.37□□□□□ -1.23
CCDC40-214ENST00000575431 U3KQ87 197 aa7.37□□□□□ -1.23
CCDC40-214ENST00000575431 HOXD3P31249 432 aaPredicted RBP7.36□□□□□ -1.23
CCDC40-214ENST00000575431 FCGR2BP31994 310 aaPredicted RBP7.36□□□□□ -1.23
CCDC40-214ENST00000575431 MFAP2P55001 183 aa7.36□□□□□ -1.23
CCDC40-214ENST00000575431 MFAP4P55083 255 aa7.36□□□□□ -1.23
CCDC40-214ENST00000575431 SPINK9Q5DT21 86 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 77.8 ms