RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 IAH1Q2TAA2 248 aaPredicted RBP14.15□□□□□ -0.14
CCDC40-213ENST00000574933 BSXQ3C1V8 233 aa14.15□□□□□ -0.14
CCDC40-213ENST00000574933 PVRIGQ6DKI7 326 aa14.15□□□□□ -0.14
CCDC40-213ENST00000574933 TMEM65Q6PI78 240 aa14.15□□□□□ -0.14
CCDC40-213ENST00000574933 NDUFA11Q86Y39 141 aa14.15□□□□□ -0.14
CCDC40-213ENST00000574933 ZNF491Q8N8L2 437 aa14.15□□□□□ -0.14
CCDC40-213ENST00000574933 ZBTB8BQ8NAP8 495 aaPredicted RBP14.15□□□□□ -0.14
CCDC40-213ENST00000574933 UXS1Q8NBZ7 420 aa14.15□□□□□ -0.14
CCDC40-213ENST00000574933 OR1L6Q8NGR2 347 aa14.15□□□□□ -0.14
CCDC40-213ENST00000574933 F11RQ9Y624 299 aaKnown RBP14.15□□□□□ -0.14
CCDC40-213ENST00000574933 IGLV11-55A0A075B6I3 123 aa14.14□□□□□ -0.15
CCDC40-213ENST00000574933 TCRBV4S1A1TA0A5B7 111 aa14.14□□□□□ -0.15
CCDC40-213ENST00000574933 CCSO14618 274 aa14.14□□□□□ -0.15
CCDC40-213ENST00000574933 MED6O75586 246 aa14.14□□□□□ -0.15
CCDC40-213ENST00000574933 REG1AP05451 166 aa14.14□□□□□ -0.15
CCDC40-213ENST00000574933 IL15RAQ13261 267 aa14.14□□□□□ -0.15
CCDC40-213ENST00000574933 SPINK9Q5DT21 86 aa14.14□□□□□ -0.15
CCDC40-213ENST00000574933 LCNL1Q6ZST4 164 aa14.14□□□□□ -0.15
CCDC40-213ENST00000574933 C11orf44Q8N8P7 122 aa14.14□□□□□ -0.15
CCDC40-213ENST00000574933 OR1P1Q8NH06 330 aa14.14□□□□□ -0.15
CCDC40-213ENST00000574933 UBE2E2Q96LR5 201 aa14.14□□□□□ -0.15
CCDC40-213ENST00000574933 C2orf50Q96LR7 162 aa14.14□□□□□ -0.15
CCDC40-213ENST00000574933 RBKSQ9H477 322 aa14.14□□□□□ -0.15
CCDC40-213ENST00000574933 ENY2Q9NPA8 101 aa14.14□□□□□ -0.15
CCDC40-213ENST00000574933 CEBPZOSA8MTT3 80 aa14.13□□□□□ -0.15
CCDC40-213ENST00000574933 TRGV3P03979 118 aa14.13□□□□□ -0.15
CCDC40-213ENST00000574933 HOXA1P49639 335 aaPredicted RBP14.13□□□□□ -0.15
CCDC40-213ENST00000574933 GSG1LQ6UXU4 331 aa14.13□□□□□ -0.15
CCDC40-213ENST00000574933 NECAP1Q8NC96 275 aa14.13□□□□□ -0.15
CCDC40-213ENST00000574933 USMG5Q96IX5 58 aa14.13□□□□□ -0.15
CCDC40-213ENST00000574933 MS4A10Q96PG2 267 aa14.13□□□□□ -0.15
CCDC40-213ENST00000574933 P2RX4Q99571 388 aa14.13□□□□□ -0.15
CCDC40-213ENST00000574933 ZNF355PQ9NSJ1 428 aa14.13□□□□□ -0.15
CCDC40-213ENST00000574933 DMRT1Q9Y5R6 373 aa14.13□□□□□ -0.15
CCDC40-213ENST00000574933 C5orf51A6NDU8 294 aa14.12□□□□□ -0.15
CCDC40-213ENST00000574933 FAM223BA6NKX1 122 aa14.12□□□□□ -0.15
CCDC40-213ENST00000574933 CYB5BO43169 146 aa14.12□□□□□ -0.15
CCDC40-213ENST00000574933 SYNGR2O43760 224 aa14.12□□□□□ -0.15
CCDC40-213ENST00000574933 SSNA1O43805 119 aa14.12□□□□□ -0.15
CCDC40-213ENST00000574933 LY86O95711 162 aa14.12□□□□□ -0.15
CCDC40-213ENST00000574933 RNASE2P10153 161 aaKnown RBP14.12□□□□□ -0.15
CCDC40-213ENST00000574933 NKX2-1P43699 371 aaPredicted RBP14.12□□□□□ -0.15
CCDC40-213ENST00000574933 MFAP2P55001 183 aa14.12□□□□□ -0.15
CCDC40-213ENST00000574933 TPPP2P59282 170 aa14.12□□□□□ -0.15
CCDC40-213ENST00000574933 RUNX1Q01196 453 aa14.12□□□□□ -0.15
CCDC40-213ENST00000574933 C19orf35Q6ZS72 473 aa14.12□□□□□ -0.15
CCDC40-213ENST00000574933 FAM223AQ8IWN6 122 aa14.12□□□□□ -0.15
CCDC40-213ENST00000574933 DTD1Q8TEA8 209 aa14.12□□□□□ -0.15
CCDC40-213ENST00000574933 A0A0G2JLM5 398 aa14.11□□□□□ -0.15
CCDC40-213ENST00000574933 C13orf42A0A1B0GVH6 325 aa14.11□□□□□ -0.15
CCDC40-213ENST00000574933 NXPH3O95157 252 aa14.11□□□□□ -0.15
CCDC40-213ENST00000574933 PRH1P02810 166 aa14.11□□□□□ -0.15
CCDC40-213ENST00000574933 DEFA4P12838 97 aa14.11□□□□□ -0.15
CCDC40-213ENST00000574933 HTR2BP41595 481 aa14.11□□□□□ -0.15
CCDC40-213ENST00000574933 ATP5IP56385 69 aaPredicted RBP14.11□□□□□ -0.15
CCDC40-213ENST00000574933 RHOGP84095 191 aa14.11□□□□□ -0.15
CCDC40-213ENST00000574933 CIB3Q96Q77 187 aaPredicted RBP14.11□□□□□ -0.15
CCDC40-213ENST00000574933 HIPK2Q9H2X6 1198 aa14.11□□□□□ -0.15
CCDC40-213ENST00000574933 HEYLQ9NQ87 328 aaPredicted RBP14.11□□□□□ -0.15
CCDC40-213ENST00000574933 GOSR2O14653 212 aa14.1□□□□□ -0.15
CCDC40-213ENST00000574933 SNCAP37840 140 aa14.1□□□□□ -0.15
CCDC40-213ENST00000574933 SUB1P53999 127 aaKnown RBP eCLIP14.1□□□□□ -0.15
CCDC40-213ENST00000574933 C2orf83Q53S99 150 aa14.1□□□□□ -0.15
CCDC40-213ENST00000574933 C4orf3Q8WVX3 66 aa14.1□□□□□ -0.15
CCDC40-213ENST00000574933 THYN1Q9P016 225 aa14.1□□□□□ -0.15
CCDC40-213ENST00000574933 GSKIPQ9P0R6 139 aa14.1□□□□□ -0.15
CCDC40-213ENST00000574933 FBXL7Q9UJT9 491 aa14.1□□□□□ -0.15
CCDC40-213ENST00000574933 U3KQ87 197 aa14.1□□□□□ -0.15
CCDC40-213ENST00000574933 FAM25EA8MYX2 175 aa14.09□□□□□ -0.15
CCDC40-213ENST00000574933 I3L521 148 aa14.09□□□□□ -0.15
CCDC40-213ENST00000574933 OR2J3O76001 311 aa14.09□□□□□ -0.15
CCDC40-213ENST00000574933 MBPP02686 304 aaPredicted RBP14.09□□□□□ -0.15
CCDC40-213ENST00000574933 CYCSP99999 105 aaKnown RBP14.09□□□□□ -0.15
CCDC40-213ENST00000574933 HIST2H2BDQ6DRA6 164 aa14.09□□□□□ -0.15
CCDC40-213ENST00000574933 SLC25A24Q6NUK1 477 aa14.09□□□□□ -0.15
CCDC40-213ENST00000574933 NMES1Q9C002 83 aa14.09□□□□□ -0.15
CCDC40-213ENST00000574933 GNB4Q9HAV0 340 aa14.09□□□□□ -0.15
CCDC40-213ENST00000574933 NDUFB8O95169 186 aa14.08□□□□□ -0.16
CCDC40-213ENST00000574933 LGALS1P09382 135 aaKnown RBP14.08□□□□□ -0.16
CCDC40-213ENST00000574933 H2BFSP57053 126 aa14.08□□□□□ -0.16
CCDC40-213ENST00000574933 POLR2GP62487 172 aaKnown RBP eCLIP14.08□□□□□ -0.16
CCDC40-213ENST00000574933 ATP5G2Q06055 141 aa14.08□□□□□ -0.16
CCDC40-213ENST00000574933 C15orf32Q32M92 178 aa14.08□□□□□ -0.16
CCDC40-213ENST00000574933 KHDC1LQ5JSQ8 128 aa14.08□□□□□ -0.16
CCDC40-213ENST00000574933 FAM209BQ5JX69 171 aa14.08□□□□□ -0.16
CCDC40-213ENST00000574933 ZNF343Q6P1L6 599 aa14.08□□□□□ -0.16
CCDC40-213ENST00000574933 C18orf65Q6ZTR6 163 aa14.08□□□□□ -0.16
CCDC40-213ENST00000574933 NOXA1Q86UR1 476 aa14.08□□□□□ -0.16
CCDC40-213ENST00000574933 SLC24A4Q8NFF2 622 aa14.08□□□□□ -0.16
CCDC40-213ENST00000574933 VN1R17PQ8TDU5 208 aa14.08□□□□□ -0.16
CCDC40-213ENST00000574933 TMEM170AQ8WVE7 144 aa14.08□□□□□ -0.16
CCDC40-213ENST00000574933 MAGT1Q9H0U3 335 aa14.08□□□□□ -0.16
CCDC40-213ENST00000574933 MED28Q9H204 178 aa14.08□□□□□ -0.16
CCDC40-213ENST00000574933 RCL1Q9Y2P8 373 aaKnown RBP14.08□□□□□ -0.16
CCDC40-213ENST00000574933 CORTO00230 105 aa14.07□□□□□ -0.16
CCDC40-213ENST00000574933 SIX6O95475 246 aa14.07□□□□□ -0.16
CCDC40-213ENST00000574933 NPY1RP25929 384 aa14.07□□□□□ -0.16
CCDC40-213ENST00000574933 C11orf87Q6NUJ2 197 aa14.07□□□□□ -0.16
CCDC40-213ENST00000574933 KLHL30-AS1Q8NEE0 82 aa14.07□□□□□ -0.16
CCDC40-213ENST00000574933 SMIM8Q96KF7 97 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms