RNA–Protein interactions for RNA: ENST00000574022.1

CHD3-217, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 103 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-217ENST00000574022 IGHV3-15A0A0B4J1V0 119 aa1.21□□□□□ -2.22
CHD3-217ENST00000574022 TRAV41A0A0B4J266 112 aa1.21□□□□□ -2.22
CHD3-217ENST00000574022 MDFIC2A0A1B0GVS7 189 aa1.21□□□□□ -2.22
CHD3-217ENST00000574022 IRGMA1A4Y4 181 aa1.21□□□□□ -2.22
CHD3-217ENST00000574022 LRCOL1A6NCL2 159 aa1.21□□□□□ -2.22
CHD3-217ENST00000574022 TMEM235A6NFC5 223 aa1.21□□□□□ -2.22
CHD3-217ENST00000574022 RIIAD1A6NNX1 92 aa1.21□□□□□ -2.22
CHD3-217ENST00000574022 FABP5P3A8MUU1 101 aa1.21□□□□□ -2.22
CHD3-217ENST00000574022 E7EQ34 232 aa1.21□□□□□ -2.22
CHD3-217ENST00000574022 TRAPPC2LH3BP13 241 aa1.21□□□□□ -2.22
CHD3-217ENST00000574022 H3BPC8 53 aa1.21□□□□□ -2.22
CHD3-217ENST00000574022 ZNF73O43830 326 aaPredicted RBP1.21□□□□□ -2.22
CHD3-217ENST00000574022 ORC5O43913 435 aa1.21□□□□□ -2.22
CHD3-217ENST00000574022 OR2J2O76002 312 aa1.21□□□□□ -2.22
CHD3-217ENST00000574022 CPSF4O95639 269 aaKnown RBP1.21□□□□□ -2.22
CHD3-217ENST00000574022 IGHV3-7P01780 117 aa1.21□□□□□ -2.22
CHD3-217ENST00000574022 RPS4Y1P22090 263 aaKnown RBP1.21□□□□□ -2.22
CHD3-217ENST00000574022 COL8A2P25067 703 aa1.21□□□□□ -2.22
CHD3-217ENST00000574022 S100A4P26447 101 aaKnown RBP1.21□□□□□ -2.22
CHD3-217ENST00000574022 GLRXP35754 106 aa1.21□□□□□ -2.22
CHD3-217ENST00000574022 TPI1P60174 286 aa1.21□□□□□ -2.22
CHD3-217ENST00000574022 CDC42P60953 191 aa1.21□□□□□ -2.22
CHD3-217ENST00000574022 S100A12P80511 92 aa1.21□□□□□ -2.22
CHD3-217ENST00000574022 FLI1Q01543 452 aaPredicted RBP1.21□□□□□ -2.22
CHD3-217ENST00000574022 RPL18Q07020 188 aaKnown RBP1.21□□□□□ -2.22
CHD3-217ENST00000574022 MIAQ16674 131 aa1.21□□□□□ -2.22
CHD3-217ENST00000574022 SCGB2B2Q4G0G5 96 aa1.21□□□□□ -2.22
CHD3-217ENST00000574022 PYDC2Q56P42 97 aa1.21□□□□□ -2.22
CHD3-217ENST00000574022 CHCHD2P9Q5T1J5 151 aaPredicted RBP1.21□□□□□ -2.22
CHD3-217ENST00000574022 LCE3CQ5T5A8 94 aa1.21□□□□□ -2.22
CHD3-217ENST00000574022 SAMD13Q5VXD3 122 aa1.21□□□□□ -2.22
CHD3-217ENST00000574022 ZNF705AQ6ZN79 300 aaPredicted RBP1.21□□□□□ -2.22
CHD3-217ENST00000574022 ZNF767PQ75MW2 155 aa1.21□□□□□ -2.22
CHD3-217ENST00000574022 MSRB3Q8IXL7 192 aa1.21□□□□□ -2.22
CHD3-217ENST00000574022 C1orf64Q8NEQ6 169 aa1.21□□□□□ -2.22
CHD3-217ENST00000574022 OR10D4PQ8NGN7 298 aa1.21□□□□□ -2.22
CHD3-217ENST00000574022 SKA2Q8WVK7 121 aaPredicted RBP1.21□□□□□ -2.22
CHD3-217ENST00000574022 LINC00167Q96N53 147 aa1.21□□□□□ -2.22
CHD3-217ENST00000574022 AIF1LQ9BQI0 150 aa1.21□□□□□ -2.22
CHD3-217ENST00000574022 ZNF2Q9BSG1 426 aaPredicted RBP1.21□□□□□ -2.22
CHD3-217ENST00000574022 HIGD2AQ9BW72 106 aa1.21□□□□□ -2.22
CHD3-217ENST00000574022 IMUPQ9GZP8 106 aa1.21□□□□□ -2.22
CHD3-217ENST00000574022 PBOV1Q9GZY1 135 aa1.21□□□□□ -2.22
CHD3-217ENST00000574022 RNF122Q9H9V4 155 aa1.21□□□□□ -2.22
CHD3-217ENST00000574022 SLC39A9Q9NUM3 307 aa1.21□□□□□ -2.22
CHD3-217ENST00000574022 TXNL4BQ9NX01 149 aaKnown RBP1.21□□□□□ -2.22
CHD3-217ENST00000574022 AMMECR1Q9Y4X0 333 aaPredicted RBP1.21□□□□□ -2.22
CHD3-217ENST00000574022 HSPB11Q9Y547 144 aa1.21□□□□□ -2.22
CHD3-217ENST00000574022 R4GN34 69 aa1.21□□□□□ -2.22
CHD3-217ENST00000574022 MYH2Q9UKX2 1941 aa1.21□□□□□ -2.22
CHD3-217ENST00000574022 WDR90Q96KV7 1748 aa1.2□□□□□ -2.22
CHD3-217ENST00000574022 SHANK3Q9BYB0 1731 aa1.2□□□□□ -2.22
CHD3-217ENST00000574022 TOPBP1Q92547 1522 aa1.2□□□□□ -2.22
CHD3-217ENST00000574022 A0A0J9YW62 118 aa1.2□□□□□ -2.22
CHD3-217ENST00000574022 A0A1B0GVY2 172 aa1.2□□□□□ -2.22
CHD3-217ENST00000574022 A0A1W2PQD3 144 aa1.2□□□□□ -2.22
CHD3-217ENST00000574022 A0A1W2PRE2 83 aa1.2□□□□□ -2.22
CHD3-217ENST00000574022 PRORSD1PA6NEY8 169 aa1.2□□□□□ -2.22
CHD3-217ENST00000574022 C1orf196B1AJZ1 125 aa1.2□□□□□ -2.22
CHD3-217ENST00000574022 BUB1B-PAK6H3BSN5 160 aa1.2□□□□□ -2.22
CHD3-217ENST00000574022 CYB5BO43169 146 aa1.2□□□□□ -2.22
CHD3-217ENST00000574022 CREBL2O60519 120 aaPredicted RBP1.2□□□□□ -2.22
CHD3-217ENST00000574022 CST8O60676 142 aa1.2□□□□□ -2.22
CHD3-217ENST00000574022 IGKV3-11P04433 115 aa1.2□□□□□ -2.22
CHD3-217ENST00000574022 CSN2P05814 226 aa1.2□□□□□ -2.22
CHD3-217ENST00000574022 BPGMP07738 259 aa1.2□□□□□ -2.22
CHD3-217ENST00000574022 UCHL1P09936 223 aa1.2□□□□□ -2.22
CHD3-217ENST00000574022 TFPTP0C1Z6 253 aa1.2□□□□□ -2.22
CHD3-217ENST00000574022 CD24P25063 80 aa1.2□□□□□ -2.22
CHD3-217ENST00000574022 PSMD8P48556 350 aa1.2□□□□□ -2.22
CHD3-217ENST00000574022 ZNF80P51504 273 aaPredicted RBP1.2□□□□□ -2.22
CHD3-217ENST00000574022 YPEL3P61236 119 aaPredicted RBP1.2□□□□□ -2.22
CHD3-217ENST00000574022 SURF2Q15527 256 aaPredicted RBP1.2□□□□□ -2.22
CHD3-217ENST00000574022 TMEM128Q5BJH2 165 aa1.2□□□□□ -2.22
CHD3-217ENST00000574022 TOMM20LQ6UXN7 152 aa1.2□□□□□ -2.22
CHD3-217ENST00000574022 LCA10Q71F78 164 aa1.2□□□□□ -2.22
CHD3-217ENST00000574022 KTN1-AS1Q86SY8 53 aa1.2□□□□□ -2.22
CHD3-217ENST00000574022 EXOC3-AS1Q8N2X6 119 aa1.2□□□□□ -2.22
CHD3-217ENST00000574022 C12orf29Q8N999 325 aa1.2□□□□□ -2.22
CHD3-217ENST00000574022 TMEM35BQ8NCS4 154 aa1.2□□□□□ -2.22
CHD3-217ENST00000574022 OR5C1Q8NGR4 320 aa1.2□□□□□ -2.22
CHD3-217ENST00000574022 CMTM2Q8TAZ6 248 aa1.2□□□□□ -2.22
CHD3-217ENST00000574022 MBD3L1Q8WWY6 194 aa1.2□□□□□ -2.22
CHD3-217ENST00000574022 DNAJC9Q8WXX5 260 aa1.2□□□□□ -2.22
CHD3-217ENST00000574022 PLEKHB2Q96CS7 222 aa1.2□□□□□ -2.22
CHD3-217ENST00000574022 RMND5BQ96G75 393 aaPredicted RBP1.2□□□□□ -2.22
CHD3-217ENST00000574022 DNAJC30Q96LL9 226 aa1.2□□□□□ -2.22
CHD3-217ENST00000574022 EFCAB11Q9BUY7 163 aa1.2□□□□□ -2.22
CHD3-217ENST00000574022 RSPO3Q9BXY4 272 aaPredicted RBP1.2□□□□□ -2.22
CHD3-217ENST00000574022 OR2J1Q9GZK6 312 aa1.2□□□□□ -2.22
CHD3-217ENST00000574022 OR8D2Q9GZM6 311 aa1.2□□□□□ -2.22
CHD3-217ENST00000574022 AICDAQ9GZX7 198 aa1.2□□□□□ -2.22
CHD3-217ENST00000574022 MRPL16Q9NX20 251 aaKnown RBP1.2□□□□□ -2.22
CHD3-217ENST00000574022 TAS2R7Q9NYW3 318 aa1.2□□□□□ -2.22
CHD3-217ENST00000574022 GINS2Q9Y248 185 aa1.2□□□□□ -2.22
CHD3-217ENST00000574022 ERGIC3Q9Y282 383 aa1.2□□□□□ -2.22
CHD3-217ENST00000574022 RBM7Q9Y580 266 aaKnown RBP1.2□□□□□ -2.22
CHD3-217ENST00000574022 TIMM22Q9Y584 194 aa1.2□□□□□ -2.22
CHD3-217ENST00000574022 UBR2Q8IWV8 1755 aa1.2□□□□□ -2.22
CHD3-217ENST00000574022 SETD5Q9C0A6 1442 aa1.2□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms