RNA–Protein interactions for RNA: ENST00000572750.1

CHD3-215, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 750 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-215ENST00000572750 PPP1R1AQ13522 171 aa12.18□□□□□ -0.46
CHD3-215ENST00000572750 TMEM128Q5BJH2 165 aa12.18□□□□□ -0.46
CHD3-215ENST00000572750 Q6ZRM9 215 aa12.18□□□□□ -0.46
CHD3-215ENST00000572750 RCC1LQ96I51 464 aaKnown RBP12.18□□□□□ -0.46
CHD3-215ENST00000572750 WDR12Q9GZL7 423 aaKnown RBP12.18□□□□□ -0.46
CHD3-215ENST00000572750 CACNG5Q9UF02 275 aa12.18□□□□□ -0.46
CHD3-215ENST00000572750 FBXL7Q9UJT9 491 aa12.18□□□□□ -0.46
CHD3-215ENST00000572750 NDUFB8O95169 186 aa12.17□□□□□ -0.46
CHD3-215ENST00000572750 IGHV3-23P01764 117 aa12.17□□□□□ -0.46
CHD3-215ENST00000572750 HSPB1P04792 205 aaKnown RBP12.17□□□□□ -0.46
CHD3-215ENST00000572750 ZNF846Q147U1 533 aa12.17□□□□□ -0.46
CHD3-215ENST00000572750 ANKRD55Q3KP44 614 aa12.17□□□□□ -0.46
CHD3-215ENST00000572750 ZNF343Q6P1L6 599 aa12.17□□□□□ -0.46
CHD3-215ENST00000572750 HSD17B13Q7Z5P4 300 aaPredicted RBP12.17□□□□□ -0.46
CHD3-215ENST00000572750 ZNF429Q86V71 674 aa12.17□□□□□ -0.46
CHD3-215ENST00000572750 FAM219AQ8IW50 185 aa12.17□□□□□ -0.46
CHD3-215ENST00000572750 IL22RA2Q969J5 263 aa12.17□□□□□ -0.46
CHD3-215ENST00000572750 KRTAP17-1Q9BYP8 105 aa12.17□□□□□ -0.46
CHD3-215ENST00000572750 PLEKHA3Q9HB20 300 aa12.17□□□□□ -0.46
CHD3-215ENST00000572750 MFSD2BA6NFX1 497 aa12.16□□□□□ -0.46
CHD3-215ENST00000572750 NXPH3O95157 252 aa12.16□□□□□ -0.46
CHD3-215ENST00000572750 IFNA17P01571 189 aa12.16□□□□□ -0.46
CHD3-215ENST00000572750 HOXD3P31249 432 aaPredicted RBP12.16□□□□□ -0.46
CHD3-215ENST00000572750 MFAP2P55001 183 aa12.16□□□□□ -0.46
CHD3-215ENST00000572750 HSPE1P61604 102 aaKnown RBP12.16□□□□□ -0.46
CHD3-215ENST00000572750 SRPXP78539 464 aa12.16□□□□□ -0.46
CHD3-215ENST00000572750 BEAN1Q3B7T3 259 aa12.16□□□□□ -0.46
CHD3-215ENST00000572750 LYZL2Q7Z4W2 148 aa12.16□□□□□ -0.46
CHD3-215ENST00000572750 LGI3Q8N145 548 aa12.16□□□□□ -0.46
CHD3-215ENST00000572750 GPR146Q96CH1 333 aa12.16□□□□□ -0.46
CHD3-215ENST00000572750 PDCD10Q9BUL8 212 aa12.16□□□□□ -0.46
CHD3-215ENST00000572750 C20orf85Q9H1P6 137 aa12.16□□□□□ -0.46
CHD3-215ENST00000572750 TBC1D24Q9ULP9 559 aa12.16□□□□□ -0.46
CHD3-215ENST00000572750 F11RQ9Y624 299 aaKnown RBP12.16□□□□□ -0.46
CHD3-215ENST00000572750 A0A0B4J2A0 478 aa12.15□□□□□ -0.46
CHD3-215ENST00000572750 SFT2D2O95562 160 aa12.15□□□□□ -0.46
CHD3-215ENST00000572750 HIST1H1BP16401 226 aaKnown RBP12.15□□□□□ -0.46
CHD3-215ENST00000572750 ANXA7P20073 488 aaKnown RBP12.15□□□□□ -0.46
CHD3-215ENST00000572750 HOXA1P49639 335 aaPredicted RBP12.15□□□□□ -0.46
CHD3-215ENST00000572750 KLK9Q2XQG4 91 aa12.15□□□□□ -0.46
CHD3-215ENST00000572750 NMSQ5H8A3 153 aa12.15□□□□□ -0.46
CHD3-215ENST00000572750 DCUN1D4Q92564 292 aa12.15□□□□□ -0.46
CHD3-215ENST00000572750 DLX4Q92988 240 aaPredicted RBP12.15□□□□□ -0.46
CHD3-215ENST00000572750 CCDC140Q96MF4 163 aa12.15□□□□□ -0.46
CHD3-215ENST00000572750 RANGRFQ9HD47 186 aaPredicted RBP12.15□□□□□ -0.46
CHD3-215ENST00000572750 PEF1Q9UBV8 284 aaKnown RBP12.15□□□□□ -0.46
CHD3-215ENST00000572750 SHPKQ9UHJ6 478 aa12.15□□□□□ -0.46
CHD3-215ENST00000572750 KLK9Q9UKQ9 250 aa12.15□□□□□ -0.46
CHD3-215ENST00000572750 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.14□□□□□ -0.47
CHD3-215ENST00000572750 PPP5D1E7EU14 171 aa12.14□□□□□ -0.47
CHD3-215ENST00000572750 UPK1BO75841 260 aa12.14□□□□□ -0.47
CHD3-215ENST00000572750 HLA-AP01891 365 aaKnown RBP12.14□□□□□ -0.47
CHD3-215ENST00000572750 UBE2MP61081 183 aaKnown RBP12.14□□□□□ -0.47
CHD3-215ENST00000572750 OR2C3Q8N628 320 aa12.14□□□□□ -0.47
CHD3-215ENST00000572750 IGHV3-21A0A0B4J1V1 117 aa12.13□□□□□ -0.47
CHD3-215ENST00000572750 SEC14L6B5MCN3 397 aa12.13□□□□□ -0.47
CHD3-215ENST00000572750 BMPR1BO00238 502 aa12.13□□□□□ -0.47
CHD3-215ENST00000572750 OVOL1O14753 267 aa12.13□□□□□ -0.47
CHD3-215ENST00000572750 CYB5BO43169 146 aa12.13□□□□□ -0.47
CHD3-215ENST00000572750 DUS4LO95620 317 aaKnown RBP12.13□□□□□ -0.47
CHD3-215ENST00000572750 SULT1A3P0DMM9 295 aa12.13□□□□□ -0.47
CHD3-215ENST00000572750 SULT1A4P0DMN0 295 aa12.13□□□□□ -0.47
CHD3-215ENST00000572750 DHRS2Q13268 280 aa12.13□□□□□ -0.47
CHD3-215ENST00000572750 AARDQ4LEZ3 155 aa12.13□□□□□ -0.47
CHD3-215ENST00000572750 KPRPQ5T749 579 aaPredicted RBP12.13□□□□□ -0.47
CHD3-215ENST00000572750 SLC25A24Q6NUK1 477 aa12.13□□□□□ -0.47
CHD3-215ENST00000572750 ZNF114Q8NC26 417 aa12.13□□□□□ -0.47
CHD3-215ENST00000572750 EEF1AKMT3Q96AZ1 226 aa12.13□□□□□ -0.47
CHD3-215ENST00000572750 MCRIP2Q9BUT9 160 aaKnown RBP12.13□□□□□ -0.47
CHD3-215ENST00000572750 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.13□□□□□ -0.47
CHD3-215ENST00000572750 NUDT15Q9NV35 164 aa12.13□□□□□ -0.47
CHD3-215ENST00000572750 TRAV6A0A075B6T7 132 aa12.12□□□□□ -0.47
CHD3-215ENST00000572750 C9orf170A2RU37 121 aa12.12□□□□□ -0.47
CHD3-215ENST00000572750 PRB2P02812 416 aaPredicted RBP12.12□□□□□ -0.47
CHD3-215ENST00000572750 OR4E1P0C645 316 aa12.12□□□□□ -0.47
CHD3-215ENST00000572750 ZP3P21754 424 aa12.12□□□□□ -0.47
CHD3-215ENST00000572750 IFITM3Q01628 133 aa12.12□□□□□ -0.47
CHD3-215ENST00000572750 ASAH1Q13510 395 aa12.12□□□□□ -0.47
CHD3-215ENST00000572750 C4orf46Q504U0 113 aa12.12□□□□□ -0.47
CHD3-215ENST00000572750 C11orf87Q6NUJ2 197 aa12.12□□□□□ -0.47
CHD3-215ENST00000572750 CLEC19AQ6UXS0 136 aa12.12□□□□□ -0.47
CHD3-215ENST00000572750 LRTM2Q8N967 370 aa12.12□□□□□ -0.47
CHD3-215ENST00000572750 OR1P1Q8NH06 330 aa12.12□□□□□ -0.47
CHD3-215ENST00000572750 THYN1Q9P016 225 aa12.12□□□□□ -0.47
CHD3-215ENST00000572750 RYR2Q92736 4967 aa12.11□□□□□ -0.47
CHD3-215ENST00000572750 DUXBA0A1W2PPF3 345 aa12.11□□□□□ -0.47
CHD3-215ENST00000572750 TCRBP04435 133 aa12.11□□□□□ -0.47
CHD3-215ENST00000572750 GPR183P32249 361 aa12.11□□□□□ -0.47
CHD3-215ENST00000572750 SYNJ2BPP57105 145 aa12.11□□□□□ -0.47
CHD3-215ENST00000572750 SPCS3P61009 180 aa12.11□□□□□ -0.47
CHD3-215ENST00000572750 ERHP84090 104 aaKnown RBP12.11□□□□□ -0.47
CHD3-215ENST00000572750 SMCO1Q147U7 214 aa12.11□□□□□ -0.47
CHD3-215ENST00000572750 RPEL1Q2QD12 228 aa12.11□□□□□ -0.47
CHD3-215ENST00000572750 LYG2Q86SG7 212 aa12.11□□□□□ -0.47
CHD3-215ENST00000572750 OR52B4Q8NGK2 314 aa12.11□□□□□ -0.47
CHD3-215ENST00000572750 ZNF502Q8TBZ5 544 aa12.11□□□□□ -0.47
CHD3-215ENST00000572750 MISP3Q96FF7 219 aa12.11□□□□□ -0.47
CHD3-215ENST00000572750 CXorf58Q96LI9 332 aa12.11□□□□□ -0.47
CHD3-215ENST00000572750 GPR61Q9BZJ8 451 aa12.11□□□□□ -0.47
CHD3-215ENST00000572750 ENY2Q9NPA8 101 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms