RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 EGFEM1PQ0D2K5 195 aa10□□□□□ -0.81
CLK3-224ENST00000568605 DCTN2Q13561 401 aaKnown RBP10□□□□□ -0.81
CLK3-224ENST00000568605 KLK9Q2XQG4 91 aa10□□□□□ -0.81
CLK3-224ENST00000568605 TMEM128Q5BJH2 165 aa10□□□□□ -0.81
CLK3-224ENST00000568605 DLX4Q92988 240 aaPredicted RBP10□□□□□ -0.81
CLK3-224ENST00000568605 TMEM230Q96A57 120 aa10□□□□□ -0.81
CLK3-224ENST00000568605 FANCD2OSQ96PS1 177 aa10□□□□□ -0.81
CLK3-224ENST00000568605 OR4C12Q96R67 309 aa10□□□□□ -0.81
CLK3-224ENST00000568605 ENY2Q9NPA8 101 aa10□□□□□ -0.81
CLK3-224ENST00000568605 KLK9Q9UKQ9 250 aa10□□□□□ -0.81
CLK3-224ENST00000568605 F11RQ9Y624 299 aaKnown RBP10□□□□□ -0.81
CLK3-224ENST00000568605 A6NHS1 94 aa9.99□□□□□ -0.81
CLK3-224ENST00000568605 P0C879 139 aa9.99□□□□□ -0.81
CLK3-224ENST00000568605 IL7P13232 177 aa9.99□□□□□ -0.81
CLK3-224ENST00000568605 VAMP1P23763 118 aa9.99□□□□□ -0.81
CLK3-224ENST00000568605 HOXA1P49639 335 aaPredicted RBP9.99□□□□□ -0.81
CLK3-224ENST00000568605 UBE2MP61081 183 aaKnown RBP9.99□□□□□ -0.81
CLK3-224ENST00000568605 BAK1Q16611 211 aa9.99□□□□□ -0.81
CLK3-224ENST00000568605 CNPY1Q3B7I2 92 aa9.99□□□□□ -0.81
CLK3-224ENST00000568605 PDLIM3Q53GG5 364 aaPredicted RBP9.99□□□□□ -0.81
CLK3-224ENST00000568605 SLC25A24Q6NUK1 477 aa9.99□□□□□ -0.81
CLK3-224ENST00000568605 C19orf35Q6ZS72 473 aa9.99□□□□□ -0.81
CLK3-224ENST00000568605 LGI3Q8N145 548 aa9.99□□□□□ -0.81
CLK3-224ENST00000568605 CENPSQ8N2Z9 138 aa9.99□□□□□ -0.81
CLK3-224ENST00000568605 ZNF114Q8NC26 417 aa9.99□□□□□ -0.81
CLK3-224ENST00000568605 CCDC32Q9BV29 185 aa9.99□□□□□ -0.81
CLK3-224ENST00000568605 PTTG2Q9NZH5 202 aa9.99□□□□□ -0.81
CLK3-224ENST00000568605 PEMTQ9UBM1 199 aa9.99□□□□□ -0.81
CLK3-224ENST00000568605 TMEM56-RWDD3S4R434 201 aa9.99□□□□□ -0.81
CLK3-224ENST00000568605 DUXBA0A1W2PPF3 345 aa9.98□□□□□ -0.81
CLK3-224ENST00000568605 DBX1A6NMT0 343 aa9.98□□□□□ -0.81
CLK3-224ENST00000568605 ST8SIA3O43173 380 aa9.98□□□□□ -0.81
CLK3-224ENST00000568605 GGCTO75223 188 aaKnown RBP9.98□□□□□ -0.81
CLK3-224ENST00000568605 ARL3P36405 182 aa9.98□□□□□ -0.81
CLK3-224ENST00000568605 SNCAP37840 140 aa9.98□□□□□ -0.81
CLK3-224ENST00000568605 TMEM187Q14656 261 aa9.98□□□□□ -0.81
CLK3-224ENST00000568605 ACSM6Q6P461 480 aa9.98□□□□□ -0.81
CLK3-224ENST00000568605 SELENOHQ8IZQ5 122 aaKnown RBP9.98□□□□□ -0.81
CLK3-224ENST00000568605 OR2C3Q8N628 320 aa9.98□□□□□ -0.81
CLK3-224ENST00000568605 OR1P1Q8NH06 330 aa9.98□□□□□ -0.81
CLK3-224ENST00000568605 LHFPL5Q8TAF8 219 aa9.98□□□□□ -0.81
CLK3-224ENST00000568605 VN1R17PQ8TDU5 208 aa9.98□□□□□ -0.81
CLK3-224ENST00000568605 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.98□□□□□ -0.81
CLK3-224ENST00000568605 AURKAIP1Q9NWT8 199 aaPredicted RBP9.98□□□□□ -0.81
CLK3-224ENST00000568605 A0A0B4J2A0 478 aa9.97□□□□□ -0.81
CLK3-224ENST00000568605 MFSD2BA6NFX1 497 aa9.97□□□□□ -0.81
CLK3-224ENST00000568605 CORTO00230 105 aa9.97□□□□□ -0.81
CLK3-224ENST00000568605 BMPR1BO00238 502 aa9.97□□□□□ -0.81
CLK3-224ENST00000568605 NDUFB8O95169 186 aa9.97□□□□□ -0.81
CLK3-224ENST00000568605 TRBV12-3P01733 135 aa9.97□□□□□ -0.81
CLK3-224ENST00000568605 SULT1A3P0DMM9 295 aa9.97□□□□□ -0.81
CLK3-224ENST00000568605 SULT1A4P0DMN0 295 aa9.97□□□□□ -0.81
CLK3-224ENST00000568605 SUB1P53999 127 aaKnown RBP eCLIP9.97□□□□□ -0.81
CLK3-224ENST00000568605 SYNJ2BPP57105 145 aa9.97□□□□□ -0.81
CLK3-224ENST00000568605 SUPT4H1P63272 117 aaKnown RBP9.97□□□□□ -0.81
CLK3-224ENST00000568605 IZUMO4Q1ZYL8 232 aa9.97□□□□□ -0.81
CLK3-224ENST00000568605 CLEC19AQ6UXS0 136 aa9.97□□□□□ -0.81
CLK3-224ENST00000568605 OR9G4Q8NGQ1 327 aa9.97□□□□□ -0.81
CLK3-224ENST00000568605 MRAPQ8TCY5 172 aa9.97□□□□□ -0.81
CLK3-224ENST00000568605 CCDC140Q96MF4 163 aa9.97□□□□□ -0.81
CLK3-224ENST00000568605 ATP6V0BQ99437 205 aa9.97□□□□□ -0.81
CLK3-224ENST00000568605 SDHCQ99643 169 aaPredicted RBP9.97□□□□□ -0.81
CLK3-224ENST00000568605 WDR12Q9GZL7 423 aaKnown RBP9.97□□□□□ -0.81
CLK3-224ENST00000568605 GAR1Q9NY12 217 aaKnown RBP9.97□□□□□ -0.81
CLK3-224ENST00000568605 CACNG5Q9UF02 275 aa9.97□□□□□ -0.81
CLK3-224ENST00000568605 SHPKQ9UHJ6 478 aa9.97□□□□□ -0.81
CLK3-224ENST00000568605 A0A0B4J293 547 aa9.96□□□□□ -0.82
CLK3-224ENST00000568605 A0A0G2JRQ6 117 aa9.96□□□□□ -0.82
CLK3-224ENST00000568605 LINC00854A0A1B0GVQ3 168 aa9.96□□□□□ -0.82
CLK3-224ENST00000568605 PPP5D1E7EU14 171 aa9.96□□□□□ -0.82
CLK3-224ENST00000568605 INS-IGF2F8WCM5 200 aa9.96□□□□□ -0.82
CLK3-224ENST00000568605 NDUFB6O95139 128 aa9.96□□□□□ -0.82
CLK3-224ENST00000568605 GPR183P32249 361 aa9.96□□□□□ -0.82
CLK3-224ENST00000568605 CCR6P51684 374 aa9.96□□□□□ -0.82
CLK3-224ENST00000568605 SPCS3P61009 180 aa9.96□□□□□ -0.82
CLK3-224ENST00000568605 KLF5Q13887 457 aaPredicted RBP9.96□□□□□ -0.82
CLK3-224ENST00000568605 OR52E5Q8NH55 327 aa9.96□□□□□ -0.82
CLK3-224ENST00000568605 ZNF502Q8TBZ5 544 aa9.96□□□□□ -0.82
CLK3-224ENST00000568605 S4R3C0 116 aa9.96□□□□□ -0.82
CLK3-224ENST00000568605 LYRM1O43325 122 aa9.95□□□□□ -0.82
CLK3-224ENST00000568605 IGHV3-23P01764 117 aa9.95□□□□□ -0.82
CLK3-224ENST00000568605 PRB2P02812 416 aaPredicted RBP9.95□□□□□ -0.82
CLK3-224ENST00000568605 FAM106AQ4KMX7 169 aa9.95□□□□□ -0.82
CLK3-224ENST00000568605 AARDQ4LEZ3 155 aa9.95□□□□□ -0.82
CLK3-224ENST00000568605 MISP3Q96FF7 219 aa9.95□□□□□ -0.82
CLK3-224ENST00000568605 BSCL2Q96G97 398 aaPredicted RBP9.95□□□□□ -0.82
CLK3-224ENST00000568605 C21orf62Q9NYP8 219 aa9.95□□□□□ -0.82
CLK3-224ENST00000568605 ZNF256Q9Y2P7 627 aaPredicted RBP9.95□□□□□ -0.82
CLK3-224ENST00000568605 DMRT1Q9Y5R6 373 aa9.95□□□□□ -0.82
CLK3-224ENST00000568605 LGALS9O00182 355 aa9.94□□□□□ -0.82
CLK3-224ENST00000568605 TGOLN2O43493 480 aa9.94□□□□□ -0.82
CLK3-224ENST00000568605 SCGB2A1O75556 95 aa9.94□□□□□ -0.82
CLK3-224ENST00000568605 SFT2D2O95562 160 aa9.94□□□□□ -0.82
CLK3-224ENST00000568605 LY86O95711 162 aa9.94□□□□□ -0.82
CLK3-224ENST00000568605 HLA-AP01891 365 aaKnown RBP9.94□□□□□ -0.82
CLK3-224ENST00000568605 KRTAP10-11P60412 298 aa9.94□□□□□ -0.82
CLK3-224ENST00000568605 PPP1R1AQ13522 171 aa9.94□□□□□ -0.82
CLK3-224ENST00000568605 ZNF846Q147U1 533 aa9.94□□□□□ -0.82
CLK3-224ENST00000568605 SMCO1Q147U7 214 aa9.94□□□□□ -0.82
CLK3-224ENST00000568605 SPINK9Q5DT21 86 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms