RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 INPP1P49441 399 aa10.62□□□□□ -0.71
CLN3-235ENST00000568497 MECP2P51608 486 aaKnown RBP10.62□□□□□ -0.71
CLN3-235ENST00000568497 C15orf32Q32M92 178 aa10.62□□□□□ -0.71
CLN3-235ENST00000568497 TMEM268Q5VZI3 342 aa10.62□□□□□ -0.71
CLN3-235ENST00000568497 GDPD1Q8N9F7 314 aa10.62□□□□□ -0.71
CLN3-235ENST00000568497 OR1L8Q8NGR8 309 aa10.62□□□□□ -0.71
CLN3-235ENST00000568497 OR4A16Q8NH70 328 aa10.62□□□□□ -0.71
CLN3-235ENST00000568497 RNASE11Q8TAA1 199 aaKnown RBP10.62□□□□□ -0.71
CLN3-235ENST00000568497 ZNF486Q96H40 463 aaPredicted RBP10.62□□□□□ -0.71
CLN3-235ENST00000568497 NDUFA4L2Q9NRX3 87 aa10.62□□□□□ -0.71
CLN3-235ENST00000568497 SCP2D1Q9UJQ7 156 aa10.62□□□□□ -0.71
CLN3-235ENST00000568497 HERC2O95714 4834 aa10.62□□□□□ -0.71
CLN3-235ENST00000568497 NPIPB5A8MRT5 1133 aa10.61□□□□□ -0.71
CLN3-235ENST00000568497 PLA2G10O15496 165 aa10.61□□□□□ -0.71
CLN3-235ENST00000568497 ST8SIA3O43173 380 aa10.61□□□□□ -0.71
CLN3-235ENST00000568497 HSPB1P04792 205 aaKnown RBP10.61□□□□□ -0.71
CLN3-235ENST00000568497 DEFA4P12838 97 aa10.61□□□□□ -0.71
CLN3-235ENST00000568497 PTBP1P26599 531 aaKnown RBP eCLIP10.61□□□□□ -0.71
CLN3-235ENST00000568497 SLC6A1P30531 599 aa10.61□□□□□ -0.71
CLN3-235ENST00000568497 ATP5G2Q06055 141 aa10.61□□□□□ -0.71
CLN3-235ENST00000568497 TMEM187Q14656 261 aa10.61□□□□□ -0.71
CLN3-235ENST00000568497 ANKRD55Q3KP44 614 aa10.61□□□□□ -0.71
CLN3-235ENST00000568497 SLC25A24Q6NUK1 477 aa10.61□□□□□ -0.71
CLN3-235ENST00000568497 CLEC19AQ6UXS0 136 aa10.61□□□□□ -0.71
CLN3-235ENST00000568497 LYZL2Q7Z4W2 148 aa10.61□□□□□ -0.71
CLN3-235ENST00000568497 SLA2Q9H6Q3 261 aa10.61□□□□□ -0.71
CLN3-235ENST00000568497 IGLV11-55A0A075B6I3 123 aa10.6□□□□□ -0.71
CLN3-235ENST00000568497 TRBV9A0A0B4J1U6 114 aa10.6□□□□□ -0.71
CLN3-235ENST00000568497 BMPR1BO00238 502 aa10.6□□□□□ -0.71
CLN3-235ENST00000568497 CRYGCP07315 174 aa10.6□□□□□ -0.71
CLN3-235ENST00000568497 SYNJ2BPP57105 145 aa10.6□□□□□ -0.71
CLN3-235ENST00000568497 RUNX1Q01196 453 aa10.6□□□□□ -0.71
CLN3-235ENST00000568497 C9orf66Q5T8R8 295 aa10.6□□□□□ -0.71
CLN3-235ENST00000568497 SLC35G3Q8N808 338 aa10.6□□□□□ -0.71
CLN3-235ENST00000568497 CCDC140Q96MF4 163 aa10.6□□□□□ -0.71
CLN3-235ENST00000568497 TMEM222Q9H0R3 208 aa10.6□□□□□ -0.71
CLN3-235ENST00000568497 TMEM14BQ9NUH8 114 aa10.6□□□□□ -0.71
CLN3-235ENST00000568497 CACNG5Q9UF02 275 aa10.6□□□□□ -0.71
CLN3-235ENST00000568497 ZNF256Q9Y2P7 627 aaPredicted RBP10.6□□□□□ -0.71
CLN3-235ENST00000568497 ZNF257Q9Y2Q1 563 aa10.6□□□□□ -0.71
CLN3-235ENST00000568497 IGHV3OR16-8A0A075B7F1 116 aa10.59□□□□□ -0.71
CLN3-235ENST00000568497 H3BUA1 57 aa10.59□□□□□ -0.71
CLN3-235ENST00000568497 OVOL1O14753 267 aa10.59□□□□□ -0.71
CLN3-235ENST00000568497 OR2C1O95371 312 aa10.59□□□□□ -0.71
CLN3-235ENST00000568497 ANXA7P20073 488 aaKnown RBP10.59□□□□□ -0.71
CLN3-235ENST00000568497 VAMP1P23763 118 aa10.59□□□□□ -0.71
CLN3-235ENST00000568497 FAUP35544 74 aaKnown RBP10.59□□□□□ -0.71
CLN3-235ENST00000568497 AP3S2P59780 193 aa10.59□□□□□ -0.71
CLN3-235ENST00000568497 PPP1R1AQ13522 171 aa10.59□□□□□ -0.71
CLN3-235ENST00000568497 ZNF343Q6P1L6 599 aa10.59□□□□□ -0.71
CLN3-235ENST00000568497 SGPP2Q8IWX5 399 aa10.59□□□□□ -0.71
CLN3-235ENST00000568497 TMEM68Q96MH6 324 aa10.59□□□□□ -0.71
CLN3-235ENST00000568497 AIFM2Q9BRQ8 373 aa10.59□□□□□ -0.71
CLN3-235ENST00000568497 PEF1Q9UBV8 284 aaKnown RBP10.59□□□□□ -0.71
CLN3-235ENST00000568497 PRNDQ9UKY0 176 aa10.59□□□□□ -0.71
CLN3-235ENST00000568497 CDS2O95674 445 aa10.58□□□□□ -0.72
CLN3-235ENST00000568497 IFNA17P01571 189 aa10.58□□□□□ -0.72
CLN3-235ENST00000568497 OR8U8P0C7N1 319 aa10.58□□□□□ -0.72
CLN3-235ENST00000568497 UBE2MP61081 183 aaKnown RBP10.58□□□□□ -0.72
CLN3-235ENST00000568497 SURF2Q15527 256 aaPredicted RBP10.58□□□□□ -0.72
CLN3-235ENST00000568497 OR52B4Q8NGK2 314 aa10.58□□□□□ -0.72
CLN3-235ENST00000568497 MISP3Q96FF7 219 aa10.58□□□□□ -0.72
CLN3-235ENST00000568497 A0A0G2JLM5 398 aa10.57□□□□□ -0.72
CLN3-235ENST00000568497 SAP30O75446 220 aa10.57□□□□□ -0.72
CLN3-235ENST00000568497 GPR183P32249 361 aa10.57□□□□□ -0.72
CLN3-235ENST00000568497 HSPE1P61604 102 aaKnown RBP10.57□□□□□ -0.72
CLN3-235ENST00000568497 PRCDQ00LT1 54 aa10.57□□□□□ -0.72
CLN3-235ENST00000568497 IFITM3Q01628 133 aa10.57□□□□□ -0.72
CLN3-235ENST00000568497 MLANAQ16655 118 aa10.57□□□□□ -0.72
CLN3-235ENST00000568497 SLC25A42Q86VD7 318 aa10.57□□□□□ -0.72
CLN3-235ENST00000568497 NECAP1Q8NC96 275 aa10.57□□□□□ -0.72
CLN3-235ENST00000568497 CACNG8Q8WXS5 425 aa10.57□□□□□ -0.72
CLN3-235ENST00000568497 RBPMSQ93062 196 aaKnown RBP10.57□□□□□ -0.72
CLN3-235ENST00000568497 LSM10Q969L4 123 aaKnown RBP10.57□□□□□ -0.72
CLN3-235ENST00000568497 RRNAD1Q96FB5 475 aaKnown RBP10.57□□□□□ -0.72
CLN3-235ENST00000568497 TRAV6A0A075B6T7 132 aa10.56□□□□□ -0.72
CLN3-235ENST00000568497 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.56□□□□□ -0.72
CLN3-235ENST00000568497 FAM223BA6NKX1 122 aa10.56□□□□□ -0.72
CLN3-235ENST00000568497 HOXB5P09067 269 aa10.56□□□□□ -0.72
CLN3-235ENST00000568497 HOXA1P49639 335 aaPredicted RBP10.56□□□□□ -0.72
CLN3-235ENST00000568497 DHODHQ02127 395 aa10.56□□□□□ -0.72
CLN3-235ENST00000568497 FAM223AQ8IWN6 122 aa10.56□□□□□ -0.72
CLN3-235ENST00000568497 OR2C3Q8N628 320 aa10.56□□□□□ -0.72
CLN3-235ENST00000568497 UBAC2Q8NBM4 344 aa10.56□□□□□ -0.72
CLN3-235ENST00000568497 PINX1Q96BK5 328 aaKnown RBP10.56□□□□□ -0.72
CLN3-235ENST00000568497 USMG5Q96IX5 58 aa10.56□□□□□ -0.72
CLN3-235ENST00000568497 TMEM56Q96MV1 263 aa10.56□□□□□ -0.72
CLN3-235ENST00000568497 PLEKHA3Q9HB20 300 aa10.56□□□□□ -0.72
CLN3-235ENST00000568497 RANGRFQ9HD47 186 aaPredicted RBP10.56□□□□□ -0.72
CLN3-235ENST00000568497 FAM212BQ9NTI7 297 aaPredicted RBP10.56□□□□□ -0.72
CLN3-235ENST00000568497 MRPL36Q9P0J6 103 aaKnown RBP10.56□□□□□ -0.72
CLN3-235ENST00000568497 TBC1D24Q9ULP9 559 aa10.56□□□□□ -0.72
CLN3-235ENST00000568497 F11RQ9Y624 299 aaKnown RBP10.56□□□□□ -0.72
CLN3-235ENST00000568497 TMEM56-RWDD3S4R434 201 aa10.56□□□□□ -0.72
CLN3-235ENST00000568497 OR2T8A6NH00 312 aa10.55□□□□□ -0.72
CLN3-235ENST00000568497 MPTX1A8MV57 137 aa10.55□□□□□ -0.72
CLN3-235ENST00000568497 K7EIM0 57 aa10.55□□□□□ -0.72
CLN3-235ENST00000568497 NDUFB6O95139 128 aa10.55□□□□□ -0.72
CLN3-235ENST00000568497 SFT2D2O95562 160 aa10.55□□□□□ -0.72
CLN3-235ENST00000568497 CLEC3BP05452 202 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms