RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 Q5BKY6 102 aa7.56□□□□□ -1.2
VPS39-205ENST00000562258 NHLRC3Q5JS37 347 aa7.56□□□□□ -1.2
VPS39-205ENST00000562258 METTL26Q96S19 204 aa7.56□□□□□ -1.2
VPS39-205ENST00000562258 ZNF430Q9H8G1 570 aaPredicted RBP7.56□□□□□ -1.2
VPS39-205ENST00000562258 GAR1Q9NY12 217 aaKnown RBP7.56□□□□□ -1.2
VPS39-205ENST00000562258 C21orf62Q9NYP8 219 aa7.56□□□□□ -1.2
VPS39-205ENST00000562258 OR5B3Q8NH48 314 aa7.56□□□□□ -1.2
VPS39-205ENST00000562258 MALSU1Q96EH3 234 aa7.56□□□□□ -1.2
VPS39-205ENST00000562258 SGK494Q96LW2 274 aa7.56□□□□□ -1.2
VPS39-205ENST00000562258 ATP5SQ99766 215 aa7.56□□□□□ -1.2
VPS39-205ENST00000562258 IGHV2-70DA0A0C4DH43 119 aa7.55□□□□□ -1.2
VPS39-205ENST00000562258 LINC00473A8K010 186 aa7.55□□□□□ -1.2
VPS39-205ENST00000562258 M0R1W7 72 aa7.55□□□□□ -1.2
VPS39-205ENST00000562258 RRHO14718 337 aa7.55□□□□□ -1.2
VPS39-205ENST00000562258 LDLRAD4O15165 306 aa7.55□□□□□ -1.2
VPS39-205ENST00000562258 ATP6V0CP27449 155 aa7.55□□□□□ -1.2
VPS39-205ENST00000562258 CX3CL1P78423 397 aa7.55□□□□□ -1.2
VPS39-205ENST00000562258 SMIM15Q7Z3B0 74 aa7.55□□□□□ -1.2
VPS39-205ENST00000562258 ZNF436-AS1Q8NC38 126 aaPredicted RBP7.55□□□□□ -1.2
VPS39-205ENST00000562258 NECAP1Q8NC96 275 aa7.55□□□□□ -1.2
VPS39-205ENST00000562258 MARC2Q969Z3 335 aa7.55□□□□□ -1.2
VPS39-205ENST00000562258 CYYR1Q96J86 154 aa7.55□□□□□ -1.2
VPS39-205ENST00000562258 IGHV1-69DA0A0B4J2H0 117 aa7.55□□□□□ -1.2
VPS39-205ENST00000562258 DUXBA0A1W2PPF3 345 aa7.55□□□□□ -1.2
VPS39-205ENST00000562258 CORTO00230 105 aa7.55□□□□□ -1.2
VPS39-205ENST00000562258 IGHV1-69P01742 117 aa7.55□□□□□ -1.2
VPS39-205ENST00000562258 NPPCP23582 126 aa7.55□□□□□ -1.2
VPS39-205ENST00000562258 CFHR2P36980 270 aa7.55□□□□□ -1.2
VPS39-205ENST00000562258 SUMO1P63165 101 aaKnown RBP7.55□□□□□ -1.2
VPS39-205ENST00000562258 DIAPH2-AS1Q14236 149 aa7.55□□□□□ -1.2
VPS39-205ENST00000562258 SLC16A13Q7RTY0 426 aa7.55□□□□□ -1.2
VPS39-205ENST00000562258 EEF1AKMT3Q96AZ1 226 aa7.55□□□□□ -1.2
VPS39-205ENST00000562258 C16orf92Q96LL3 132 aa7.55□□□□□ -1.2
VPS39-205ENST00000562258 FGF23Q9GZV9 251 aaPredicted RBP7.55□□□□□ -1.2
VPS39-205ENST00000562258 SAV1Q9H4B6 383 aaPredicted RBP7.55□□□□□ -1.2
VPS39-205ENST00000562258 PXMP4Q9Y6I8 212 aa7.55□□□□□ -1.2
VPS39-205ENST00000562258 A0A0G2JLM5 398 aa7.55□□□□□ -1.2
VPS39-205ENST00000562258 SPINK4O60575 86 aa7.55□□□□□ -1.2
VPS39-205ENST00000562258 C11orf53Q8IXP5 236 aa7.55□□□□□ -1.2
VPS39-205ENST00000562258 ZNF383Q8NA42 475 aa7.55□□□□□ -1.2
VPS39-205ENST00000562258 AURKAIP1Q9NWT8 199 aaPredicted RBP7.55□□□□□ -1.2
VPS39-205ENST00000562258 TRAV3A0A0B4J244 114 aa7.54□□□□□ -1.2
VPS39-205ENST00000562258 S100A2P29034 98 aa7.54□□□□□ -1.2
VPS39-205ENST00000562258 CNN1P51911 297 aaKnown RBP7.54□□□□□ -1.2
VPS39-205ENST00000562258 C15orf54Q8N8G6 183 aa7.54□□□□□ -1.2
VPS39-205ENST00000562258 OR1L6Q8NGR2 347 aa7.54□□□□□ -1.2
VPS39-205ENST00000562258 ST6GAL2Q96JF0 529 aa7.54□□□□□ -1.2
VPS39-205ENST00000562258 HIGD1AQ9Y241 93 aa7.54□□□□□ -1.2
VPS39-205ENST00000562258 PSMB11A5LHX3 300 aa7.54□□□□□ -1.2
VPS39-205ENST00000562258 IGHV2-5P01817 119 aa7.54□□□□□ -1.2
VPS39-205ENST00000562258 DANCRP0C864 163 aa7.54□□□□□ -1.2
VPS39-205ENST00000562258 QRFPP83859 136 aa7.54□□□□□ -1.2
VPS39-205ENST00000562258 HERPUD1Q15011 391 aa7.54□□□□□ -1.2
VPS39-205ENST00000562258 C2orf68Q2NKX9 166 aa7.54□□□□□ -1.2
VPS39-205ENST00000562258 TM4SF20Q53R12 229 aa7.54□□□□□ -1.2
VPS39-205ENST00000562258 Q8TCH9 128 aa7.54□□□□□ -1.2
VPS39-205ENST00000562258 C1orf147Q96MC9 270 aaPredicted RBP7.54□□□□□ -1.2
VPS39-205ENST00000562258 SLC2A8Q9NY64 477 aa7.54□□□□□ -1.2
VPS39-205ENST00000562258 TECRQ9NZ01 308 aaKnown RBP7.54□□□□□ -1.2
VPS39-205ENST00000562258 MOB4Q9Y3A3 225 aa7.54□□□□□ -1.2
VPS39-205ENST00000562258 TMSB15BA0A087X1C1 80 aa7.54□□□□□ -1.2
VPS39-205ENST00000562258 UMAD1C9J7I0 102 aa7.54□□□□□ -1.2
VPS39-205ENST00000562258 M0QZK8 103 aa7.54□□□□□ -1.2
VPS39-205ENST00000562258 BMPR1BO00238 502 aa7.54□□□□□ -1.2
VPS39-205ENST00000562258 GALR1P47211 349 aa7.54□□□□□ -1.2
VPS39-205ENST00000562258 ERVK11-1P61568 191 aa7.54□□□□□ -1.2
VPS39-205ENST00000562258 C10orf105Q8TEF2 133 aa7.54□□□□□ -1.2
VPS39-205ENST00000562258 UPK2O00526 184 aa7.53□□□□□ -1.2
VPS39-205ENST00000562258 OR9G9P0C7N8 305 aa7.53□□□□□ -1.2
VPS39-205ENST00000562258 TAGLN2P37802 199 aaKnown RBP7.53□□□□□ -1.2
VPS39-205ENST00000562258 UBE2E1P51965 193 aa7.53□□□□□ -1.2
VPS39-205ENST00000562258 KRTAP10-9P60411 292 aa7.53□□□□□ -1.2
VPS39-205ENST00000562258 MINOS1Q5TGZ0 78 aa7.53□□□□□ -1.2
VPS39-205ENST00000562258 LCNL1Q6ZST4 164 aa7.53□□□□□ -1.2
VPS39-205ENST00000562258 SLC25A48Q6ZT89 311 aaKnown RBP7.53□□□□□ -1.2
VPS39-205ENST00000562258 TCTE3Q8IZS6 198 aa7.53□□□□□ -1.2
VPS39-205ENST00000562258 PFDN5Q99471 154 aa7.53□□□□□ -1.2
VPS39-205ENST00000562258 MINOS1-NBL1R4GNA1 71 aa7.53□□□□□ -1.2
VPS39-205ENST00000562258 IGKV1-6A0A0C4DH72 117 aa7.53□□□□□ -1.2
VPS39-205ENST00000562258 AMY1AP04745 511 aa7.53□□□□□ -1.2
VPS39-205ENST00000562258 CD55P08174 381 aa7.53□□□□□ -1.2
VPS39-205ENST00000562258 IGHV4-38-2P0DP08 117 aa7.53□□□□□ -1.2
VPS39-205ENST00000562258 RPL35P42766 123 aaKnown RBP7.53□□□□□ -1.2
VPS39-205ENST00000562258 TNFRSF14Q92956 283 aa7.53□□□□□ -1.2
VPS39-205ENST00000562258 NABP2Q9BQ15 211 aa7.53□□□□□ -1.2
VPS39-205ENST00000562258 TRAV41A0A0B4J266 112 aa7.53□□□□□ -1.2
VPS39-205ENST00000562258 FAM181BA6NEQ2 426 aa7.53□□□□□ -1.2
VPS39-205ENST00000562258 HOXA3O43365 443 aaPredicted RBP7.53□□□□□ -1.2
VPS39-205ENST00000562258 IGHV4-59P01825 116 aa7.53□□□□□ -1.2
VPS39-205ENST00000562258 CNTFRP26992 372 aa7.53□□□□□ -1.2
VPS39-205ENST00000562258 LAMTOR1Q6IAA8 161 aa7.53□□□□□ -1.2
VPS39-205ENST00000562258 OR5AU1Q8NGC0 362 aa7.53□□□□□ -1.2
VPS39-205ENST00000562258 NOL4LQ96MY1 436 aaPredicted RBP7.53□□□□□ -1.2
VPS39-205ENST00000562258 TUBA4BQ9H853 241 aa7.53□□□□□ -1.2
VPS39-205ENST00000562258 SERTM2A0A1B0GWG4 89 aa7.52□□□□□ -1.2
VPS39-205ENST00000562258 FAM157CP0CG43 387 aa7.52□□□□□ -1.2
VPS39-205ENST00000562258 C5orf64Q2M2E5 130 aa7.52□□□□□ -1.2
VPS39-205ENST00000562258 DEFB112Q30KQ8 113 aa7.52□□□□□ -1.2
VPS39-205ENST00000562258 C1orf122Q6ZSJ8 110 aa7.52□□□□□ -1.2
VPS39-205ENST00000562258 CHAC2Q8WUX2 184 aa7.52□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms