RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 NCALDP61601 193 aa3.15□□□□□ -1.91
SCFD1-208ENST00000553278 RHOBP62745 196 aa3.15□□□□□ -1.91
SCFD1-208ENST00000553278 TFAMQ00059 246 aaKnown RBP3.15□□□□□ -1.91
SCFD1-208ENST00000553278 LCE3EQ5T5B0 92 aa3.15□□□□□ -1.91
SCFD1-208ENST00000553278 ZNF767PQ75MW2 155 aa3.15□□□□□ -1.91
SCFD1-208ENST00000553278 GPER1Q99527 375 aa3.15□□□□□ -1.91
SCFD1-208ENST00000553278 PKMYT1Q99640 499 aa3.15□□□□□ -1.91
SCFD1-208ENST00000553278 SH3BGRL3Q9H299 93 aa3.15□□□□□ -1.91
SCFD1-208ENST00000553278 TP73-AS1Q9UF72 201 aa3.15□□□□□ -1.91
SCFD1-208ENST00000553278 SS18L2Q9UHA2 77 aa3.15□□□□□ -1.91
SCFD1-208ENST00000553278 SSR3Q9UNL2 185 aa3.15□□□□□ -1.91
SCFD1-208ENST00000553278 FAM215AQ9Y5M1 114 aa3.15□□□□□ -1.91
SCFD1-208ENST00000553278 SCN10AQ9Y5Y9 1956 aa3.14□□□□□ -1.91
SCFD1-208ENST00000553278 TRPM6Q9BX84 2022 aa3.14□□□□□ -1.91
SCFD1-208ENST00000553278 SHANK3Q9BYB0 1731 aa3.14□□□□□ -1.91
SCFD1-208ENST00000553278 TRBV19A0A075B6N1 114 aa3.14□□□□□ -1.91
SCFD1-208ENST00000553278 TRGV5A0A0B4J1U4 118 aa3.14□□□□□ -1.91
SCFD1-208ENST00000553278 A0A0J9YX75 114 aa3.14□□□□□ -1.91
SCFD1-208ENST00000553278 A0A1W2PNM2 257 aa3.14□□□□□ -1.91
SCFD1-208ENST00000553278 H7C1C5 153 aa3.14□□□□□ -1.91
SCFD1-208ENST00000553278 IFNA7P01567 189 aa3.14□□□□□ -1.91
SCFD1-208ENST00000553278 MSNP26038 577 aaKnown RBP3.14□□□□□ -1.91
SCFD1-208ENST00000553278 CASP1P29466 404 aa3.14□□□□□ -1.91
SCFD1-208ENST00000553278 KRTAP12-2P59991 146 aa3.14□□□□□ -1.91
SCFD1-208ENST00000553278 LCN6P62502 163 aa3.14□□□□□ -1.91
SCFD1-208ENST00000553278 GNG5P63218 68 aa3.14□□□□□ -1.91
SCFD1-208ENST00000553278 SPANXN3Q5MJ09 141 aa3.14□□□□□ -1.91
SCFD1-208ENST00000553278 LYRM7Q5U5X0 104 aa3.14□□□□□ -1.91
SCFD1-208ENST00000553278 LHFPL1Q86WI0 220 aa3.14□□□□□ -1.91
SCFD1-208ENST00000553278 TEX47Q8TBZ9 253 aa3.14□□□□□ -1.91
SCFD1-208ENST00000553278 TMEM70Q9BUB7 260 aa3.14□□□□□ -1.91
SCFD1-208ENST00000553278 PBDC1Q9BVG4 233 aa3.14□□□□□ -1.91
SCFD1-208ENST00000553278 DDA1Q9BW61 102 aa3.14□□□□□ -1.91
SCFD1-208ENST00000553278 HECW1Q76N89 1606 aa3.13□□□□□ -1.91
SCFD1-208ENST00000553278 SHANK1Q9Y566 2161 aa3.13□□□□□ -1.91
SCFD1-208ENST00000553278 TRAV38-1A0A0B4J264 116 aa3.13□□□□□ -1.91
SCFD1-208ENST00000553278 TRAV4A0A0B4J268 109 aa3.13□□□□□ -1.91
SCFD1-208ENST00000553278 CLDN25C9JDP6 229 aa3.13□□□□□ -1.91
SCFD1-208ENST00000553278 IGHV3-7P01780 117 aa3.13□□□□□ -1.91
SCFD1-208ENST00000553278 CRHP06850 196 aa3.13□□□□□ -1.91
SCFD1-208ENST00000553278 BPGMP07738 259 aa3.13□□□□□ -1.91
SCFD1-208ENST00000553278 RPSAP08865 295 aaKnown RBP3.13□□□□□ -1.91
SCFD1-208ENST00000553278 LGALS1P09382 135 aaKnown RBP3.13□□□□□ -1.91
SCFD1-208ENST00000553278 CCL5P13501 91 aa3.13□□□□□ -1.91
SCFD1-208ENST00000553278 AZU1P20160 251 aa3.13□□□□□ -1.91
SCFD1-208ENST00000553278 PSMB8P28062 276 aa3.13□□□□□ -1.91
SCFD1-208ENST00000553278 ALDH3A1P30838 453 aa3.13□□□□□ -1.91
SCFD1-208ENST00000553278 CCR2P41597 374 aa3.13□□□□□ -1.91
SCFD1-208ENST00000553278 TNFRSF9Q07011 255 aa3.13□□□□□ -1.91
SCFD1-208ENST00000553278 RHEBQ15382 184 aa3.13□□□□□ -1.91
SCFD1-208ENST00000553278 ZNF439Q8NDP4 499 aa3.13□□□□□ -1.91
SCFD1-208ENST00000553278 IMMP2LQ96T52 175 aa3.13□□□□□ -1.91
SCFD1-208ENST00000553278 ACER3Q9NUN7 267 aa3.13□□□□□ -1.91
SCFD1-208ENST00000553278 MED29Q9NX70 200 aa3.13□□□□□ -1.91
SCFD1-208ENST00000553278 RBM7Q9Y580 266 aaKnown RBP3.13□□□□□ -1.91
SCFD1-208ENST00000553278 TIMM22Q9Y584 194 aa3.13□□□□□ -1.91
SCFD1-208ENST00000553278 KIF1BO60333 1816 aa3.13□□□□□ -1.91
SCFD1-208ENST00000553278 NYNRINQ9P2P1 1898 aaKnown RBP3.12□□□□□ -1.91
SCFD1-208ENST00000553278 DENND4BO75064 1496 aaPredicted RBP3.12□□□□□ -1.91
SCFD1-208ENST00000553278 H3BT86 120 aa3.12□□□□□ -1.91
SCFD1-208ENST00000553278 GPR31O00270 319 aa3.12□□□□□ -1.91
SCFD1-208ENST00000553278 PRB2P02812 416 aaPredicted RBP3.12□□□□□ -1.91
SCFD1-208ENST00000553278 CTSGP08311 255 aa3.12□□□□□ -1.91
SCFD1-208ENST00000553278 S100A4P26447 101 aaKnown RBP3.12□□□□□ -1.91
SCFD1-208ENST00000553278 G6PCP35575 357 aa3.12□□□□□ -1.91
SCFD1-208ENST00000553278 ATP5G3P48201 142 aa3.12□□□□□ -1.91
SCFD1-208ENST00000553278 EMP1P54849 157 aa3.12□□□□□ -1.91
SCFD1-208ENST00000553278 TPI1P60174 286 aa3.12□□□□□ -1.91
SCFD1-208ENST00000553278 Q6ZS52 159 aa3.12□□□□□ -1.91
SCFD1-208ENST00000553278 OR4C16Q8NGL9 310 aa3.12□□□□□ -1.91
SCFD1-208ENST00000553278 OR8D2Q9GZM6 311 aa3.12□□□□□ -1.91
SCFD1-208ENST00000553278 MIXL1Q9H2W2 232 aa3.12□□□□□ -1.91
SCFD1-208ENST00000553278 SLC39A9Q9NUM3 307 aa3.12□□□□□ -1.91
SCFD1-208ENST00000553278 NAT8Q9UHE5 227 aa3.12□□□□□ -1.91
SCFD1-208ENST00000553278 PRO0461Q9UI25 63 aa3.12□□□□□ -1.91
SCFD1-208ENST00000553278 SLC35A3Q9Y2D2 325 aa3.12□□□□□ -1.91
SCFD1-208ENST00000553278 TIMM9Q9Y5J7 89 aa3.12□□□□□ -1.91
SCFD1-208ENST00000553278 SIGLEC16A6NMB1 481 aa3.11□□□□□ -1.91
SCFD1-208ENST00000553278 MFSD11O43934 449 aa3.11□□□□□ -1.91
SCFD1-208ENST00000553278 MSMBP08118 114 aa3.11□□□□□ -1.91
SCFD1-208ENST00000553278 PIGPP57054 158 aa3.11□□□□□ -1.91
SCFD1-208ENST00000553278 SLC35E3Q7Z769 313 aa3.11□□□□□ -1.91
SCFD1-208ENST00000553278 OR5J2Q8NH18 312 aa3.11□□□□□ -1.91
SCFD1-208ENST00000553278 TVP23CQ96ET8 276 aa3.11□□□□□ -1.91
SCFD1-208ENST00000553278 ZNF471Q9BX82 626 aaPredicted RBP3.11□□□□□ -1.91
SCFD1-208ENST00000553278 FMN1Q68DA7 1419 aa3.1□□□□□ -1.91
SCFD1-208ENST00000553278 YTHDC2Q9H6S0 1430 aaKnown RBP3.1□□□□□ -1.91
SCFD1-208ENST00000553278 MAST2Q6P0Q8 1798 aa3.1□□□□□ -1.91
SCFD1-208ENST00000553278 TRAV41A0A0B4J266 112 aa3.1□□□□□ -1.91
SCFD1-208ENST00000553278 A0A1W2PNN7 141 aa3.1□□□□□ -1.91
SCFD1-208ENST00000553278 SLC22A1O15245 554 aa3.1□□□□□ -1.91
SCFD1-208ENST00000553278 OR2J2O76002 312 aa3.1□□□□□ -1.91
SCFD1-208ENST00000553278 RNASE2P10153 161 aaKnown RBP3.1□□□□□ -1.91
SCFD1-208ENST00000553278 RPL28P46779 137 aaKnown RBP3.1□□□□□ -1.91
SCFD1-208ENST00000553278 SCGB2B2Q4G0G5 96 aa3.1□□□□□ -1.91
SCFD1-208ENST00000553278 PABPC1L2AQ5JQF8 200 aa3.1□□□□□ -1.91
SCFD1-208ENST00000553278 LYZL1Q6UWQ5 148 aa3.1□□□□□ -1.91
SCFD1-208ENST00000553278 IGFL3Q6UXB1 125 aa3.1□□□□□ -1.91
SCFD1-208ENST00000553278 DNAJC9Q8WXX5 260 aa3.1□□□□□ -1.91
SCFD1-208ENST00000553278 IMUPQ9GZP8 106 aa3.1□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms