RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 OR2AE1Q8NHA4 323 aa6.34□□□□□ -1.4
LIMA1-216ENST00000552909 POM121L2Q96KW2 1035 aa6.34□□□□□ -1.4
LIMA1-216ENST00000552909 NRN1Q9NPD7 142 aa6.34□□□□□ -1.4
LIMA1-216ENST00000552909 CCL28Q9NRJ3 127 aa6.34□□□□□ -1.4
LIMA1-216ENST00000552909 CLN8Q9UBY8 286 aa6.34□□□□□ -1.4
LIMA1-216ENST00000552909 IGHV2-26A0A0B4J1V2 119 aa6.33□□□□□ -1.4
LIMA1-216ENST00000552909 CD300LBA8K4G0 201 aa6.33□□□□□ -1.4
LIMA1-216ENST00000552909 F2Z2F3 143 aa6.33□□□□□ -1.4
LIMA1-216ENST00000552909 SMPD2O60906 423 aa6.33□□□□□ -1.4
LIMA1-216ENST00000552909 RAC2P15153 192 aa6.33□□□□□ -1.4
LIMA1-216ENST00000552909 NPPCP23582 126 aa6.33□□□□□ -1.4
LIMA1-216ENST00000552909 S100GP29377 79 aa6.33□□□□□ -1.4
LIMA1-216ENST00000552909 FABP6P51161 128 aa6.33□□□□□ -1.4
LIMA1-216ENST00000552909 PRSS12P56730 875 aa6.33□□□□□ -1.4
LIMA1-216ENST00000552909 RHOGP84095 191 aa6.33□□□□□ -1.4
LIMA1-216ENST00000552909 ZNF90Q03938 601 aa6.33□□□□□ -1.4
LIMA1-216ENST00000552909 MSMPQ1L6U9 139 aa6.33□□□□□ -1.4
LIMA1-216ENST00000552909 ACSM6Q6P461 480 aa6.33□□□□□ -1.4
LIMA1-216ENST00000552909 Q6ZSR3 168 aa6.33□□□□□ -1.4
LIMA1-216ENST00000552909 DTX2Q86UW9 622 aa6.33□□□□□ -1.4
LIMA1-216ENST00000552909 SAXO1Q8IYX7 474 aa6.33□□□□□ -1.4
LIMA1-216ENST00000552909 MUC15Q8N387 334 aa6.33□□□□□ -1.4
LIMA1-216ENST00000552909 PNKDQ8N490 385 aa6.33□□□□□ -1.4
LIMA1-216ENST00000552909 SMIM12Q96EX1 92 aa6.33□□□□□ -1.4
LIMA1-216ENST00000552909 BORCS8Q96FH0 119 aa6.33□□□□□ -1.4
LIMA1-216ENST00000552909 C1QTNF5Q9BXJ0 243 aa6.33□□□□□ -1.4
LIMA1-216ENST00000552909 BEX4Q9NWD9 120 aaPredicted RBP6.33□□□□□ -1.4
LIMA1-216ENST00000552909 IGKV1-27A0A075B6S5 117 aa6.33□□□□□ -1.4
LIMA1-216ENST00000552909 IGLC7A0M8Q6 106 aa6.33□□□□□ -1.4
LIMA1-216ENST00000552909 OR5B21A6NL26 309 aa6.33□□□□□ -1.4
LIMA1-216ENST00000552909 K7ERU9 68 aa6.33□□□□□ -1.4
LIMA1-216ENST00000552909 FCN1O00602 326 aa6.33□□□□□ -1.4
LIMA1-216ENST00000552909 NGFP01138 241 aa6.33□□□□□ -1.4
LIMA1-216ENST00000552909 SERPINE2P07093 398 aa6.33□□□□□ -1.4
LIMA1-216ENST00000552909 AMTP48728 403 aa6.33□□□□□ -1.4
LIMA1-216ENST00000552909 GNB1P62873 340 aa6.33□□□□□ -1.4
LIMA1-216ENST00000552909 SLC38A11Q08AI6 406 aa6.33□□□□□ -1.4
LIMA1-216ENST00000552909 C3orf36Q3SXR2 165 aa6.33□□□□□ -1.4
LIMA1-216ENST00000552909 C11orf71Q6IPW1 123 aa6.33□□□□□ -1.4
LIMA1-216ENST00000552909 ASCL4Q6XD76 172 aa6.33□□□□□ -1.4
LIMA1-216ENST00000552909 CHODLQ9H9P2 273 aa6.33□□□□□ -1.4
LIMA1-216ENST00000552909 KIAA2026Q5HYC2 2103 aa6.32□□□□□ -1.4
LIMA1-216ENST00000552909 IGKV1D-13A0A0B4J2D9 117 aa6.32□□□□□ -1.4
LIMA1-216ENST00000552909 TMEM238LA0A1B0GVL6 79 aa6.32□□□□□ -1.4
LIMA1-216ENST00000552909 PGLYRP1O75594 196 aaPredicted RBP6.32□□□□□ -1.4
LIMA1-216ENST00000552909 NDUFB4O95168 129 aa6.32□□□□□ -1.4
LIMA1-216ENST00000552909 IGKV1-13P0DP09 117 aa6.32□□□□□ -1.4
LIMA1-216ENST00000552909 PMCHP20382 165 aa6.32□□□□□ -1.4
LIMA1-216ENST00000552909 F2RP25116 425 aa6.32□□□□□ -1.4
LIMA1-216ENST00000552909 APOBEC3AP31941 199 aaPredicted RBP6.32□□□□□ -1.4
LIMA1-216ENST00000552909 GABRA2P47869 451 aa6.32□□□□□ -1.4
LIMA1-216ENST00000552909 PRRX1P54821 245 aa6.32□□□□□ -1.4
LIMA1-216ENST00000552909 ATP5J2P56134 94 aa6.32□□□□□ -1.4
LIMA1-216ENST00000552909 PDCD1Q15116 288 aa6.32□□□□□ -1.4
LIMA1-216ENST00000552909 ADIPOQQ15848 244 aa6.32□□□□□ -1.4
LIMA1-216ENST00000552909 HLA-DRB5Q30154 266 aa6.32□□□□□ -1.4
LIMA1-216ENST00000552909 SPANXN5Q5MJ07 72 aa6.32□□□□□ -1.4
LIMA1-216ENST00000552909 Q5PR19 223 aa6.32□□□□□ -1.4
LIMA1-216ENST00000552909 Q6ZS49 121 aa6.32□□□□□ -1.4
LIMA1-216ENST00000552909 COLCA1Q6ZS62 124 aa6.32□□□□□ -1.4
LIMA1-216ENST00000552909 LHFPL2Q6ZUX7 228 aa6.32□□□□□ -1.4
LIMA1-216ENST00000552909 OR10G8Q8NGN5 311 aa6.32□□□□□ -1.4
LIMA1-216ENST00000552909 KCNS1Q96KK3 526 aa6.32□□□□□ -1.4
LIMA1-216ENST00000552909 CACNG5Q9UF02 275 aa6.32□□□□□ -1.4
LIMA1-216ENST00000552909 NSD1Q96L73 2696 aaPredicted RBP6.31□□□□□ -1.4
LIMA1-216ENST00000552909 SAA2-SAA4A0A096LPE2 208 aa6.31□□□□□ -1.4
LIMA1-216ENST00000552909 TRBV9A0A0B4J1U6 114 aa6.31□□□□□ -1.4
LIMA1-216ENST00000552909 IGKV1-12A0A0C4DH73 117 aa6.31□□□□□ -1.4
LIMA1-216ENST00000552909 SNURFLB1AK76 121 aa6.31□□□□□ -1.4
LIMA1-216ENST00000552909 DEGS1O15121 323 aa6.31□□□□□ -1.4
LIMA1-216ENST00000552909 RBFOX2O43251 390 aaKnown RBP eCLIP6.31□□□□□ -1.4
LIMA1-216ENST00000552909 OR7C1O76099 320 aaPredicted RBP6.31□□□□□ -1.4
LIMA1-216ENST00000552909 LY6HO94772 140 aa6.31□□□□□ -1.4
LIMA1-216ENST00000552909 IGKV1D-12P01611 117 aa6.31□□□□□ -1.4
LIMA1-216ENST00000552909 IGHV4-39P01824 125 aa6.31□□□□□ -1.4
LIMA1-216ENST00000552909 PSG1P11464 419 aa6.31□□□□□ -1.4
LIMA1-216ENST00000552909 EGR1P18146 543 aa6.31□□□□□ -1.4
LIMA1-216ENST00000552909 IZUMO4Q1ZYL8 232 aa6.31□□□□□ -1.4
LIMA1-216ENST00000552909 TBC1D28Q2M2D7 210 aa6.31□□□□□ -1.4
LIMA1-216ENST00000552909 PRR27Q6MZM9 219 aa6.31□□□□□ -1.4
LIMA1-216ENST00000552909 Q6ZRM9 215 aa6.31□□□□□ -1.4
LIMA1-216ENST00000552909 ZCCHC24Q8N2G6 241 aaKnown RBP6.31□□□□□ -1.4
LIMA1-216ENST00000552909 CIARTQ8N365 385 aaPredicted RBP6.31□□□□□ -1.4
LIMA1-216ENST00000552909 ZNF114Q8NC26 417 aa6.31□□□□□ -1.4
LIMA1-216ENST00000552909 ZNF596Q8TC21 504 aa6.31□□□□□ -1.4
LIMA1-216ENST00000552909 APOBEC3DQ96AK3 386 aaPredicted RBP6.31□□□□□ -1.4
LIMA1-216ENST00000552909 DERL1Q9BUN8 251 aa6.31□□□□□ -1.4
LIMA1-216ENST00000552909 WNT10AQ9GZT5 417 aa6.31□□□□□ -1.4
LIMA1-216ENST00000552909 GNB4Q9HAV0 340 aa6.31□□□□□ -1.4
LIMA1-216ENST00000552909 KCNIP2Q9NS61 270 aa6.31□□□□□ -1.4
LIMA1-216ENST00000552909 IL36BQ9NZH7 164 aa6.31□□□□□ -1.4
LIMA1-216ENST00000552909 MRPL27Q9P0M9 148 aaKnown RBP6.31□□□□□ -1.4
LIMA1-216ENST00000552909 FZR1Q9UM11 496 aa6.31□□□□□ -1.4
LIMA1-216ENST00000552909 SONP18583 2426 aaKnown RBP6.31□□□□□ -1.4
LIMA1-216ENST00000552909 PGPEP1LA6NFU8 196 aa6.31□□□□□ -1.4
LIMA1-216ENST00000552909 PRSS47A8MTI9 375 aa6.31□□□□□ -1.4
LIMA1-216ENST00000552909 C17orf112F2Z3M2 114 aa6.31□□□□□ -1.4
LIMA1-216ENST00000552909 TUSC2O75896 110 aa6.31□□□□□ -1.4
LIMA1-216ENST00000552909 TOX4O94842 621 aa6.31□□□□□ -1.4
LIMA1-216ENST00000552909 S1PR2O95136 353 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms