RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 CLDND2Q8NHS1 167 aa3.08□□□□□ -1.92
LIMA1-210ENST00000552045 CNBD2Q96M20 576 aa3.08□□□□□ -1.92
LIMA1-210ENST00000552045 PRELID1Q9Y255 219 aa3.08□□□□□ -1.92
LIMA1-210ENST00000552045 ABCC12Q96J65 1359 aa3.08□□□□□ -1.92
LIMA1-210ENST00000552045 YTHDC2Q9H6S0 1430 aaKnown RBP3.08□□□□□ -1.92
LIMA1-210ENST00000552045 QSER1Q2KHR3 1735 aa3.07□□□□□ -1.92
LIMA1-210ENST00000552045 ITGB4P16144 1822 aa3.07□□□□□ -1.92
LIMA1-210ENST00000552045 MUC3AQ02505 3323 aa3.07□□□□□ -1.92
LIMA1-210ENST00000552045 IGKV3D-11A0A0A0MRZ8 115 aa3.07□□□□□ -1.92
LIMA1-210ENST00000552045 IGHV3-15A0A0B4J1V0 119 aa3.07□□□□□ -1.92
LIMA1-210ENST00000552045 H3BPC8 53 aa3.07□□□□□ -1.92
LIMA1-210ENST00000552045 PSMD12O00232 456 aaPredicted RBP3.07□□□□□ -1.92
LIMA1-210ENST00000552045 HSD11B1P28845 292 aa3.07□□□□□ -1.92
LIMA1-210ENST00000552045 PSME3P61289 254 aa3.07□□□□□ -1.92
LIMA1-210ENST00000552045 BASP1P80723 227 aaKnown RBP3.07□□□□□ -1.92
LIMA1-210ENST00000552045 MRPS25P82663 173 aaKnown RBP3.07□□□□□ -1.92
LIMA1-210ENST00000552045 GLT6D1Q7Z4J2 308 aa3.07□□□□□ -1.92
LIMA1-210ENST00000552045 OR5B17Q8NGF7 314 aa3.07□□□□□ -1.92
LIMA1-210ENST00000552045 OR13C8Q8NGS7 320 aa3.07□□□□□ -1.92
LIMA1-210ENST00000552045 DCUN1D1Q96GG9 259 aa3.07□□□□□ -1.92
LIMA1-210ENST00000552045 PPP1R2P1Q96PQ5 205 aa3.07□□□□□ -1.92
LIMA1-210ENST00000552045 CENPFP49454 3210 aa3.07□□□□□ -1.92
LIMA1-210ENST00000552045 MDFIC2A0A1B0GVS7 189 aa3.06□□□□□ -1.92
LIMA1-210ENST00000552045 PQLC2LA1A4F0 135 aa3.06□□□□□ -1.92
LIMA1-210ENST00000552045 BHLHE40O14503 412 aa3.06□□□□□ -1.92
LIMA1-210ENST00000552045 PLA2G10O15496 165 aa3.06□□□□□ -1.92
LIMA1-210ENST00000552045 XCL1P47992 114 aa3.06□□□□□ -1.92
LIMA1-210ENST00000552045 GZMMP51124 257 aa3.06□□□□□ -1.92
LIMA1-210ENST00000552045 EDDM3AQ14507 147 aa3.06□□□□□ -1.92
LIMA1-210ENST00000552045 HCP5Q6MZN7 132 aa3.06□□□□□ -1.92
LIMA1-210ENST00000552045 TCF24Q7RTU0 167 aa3.06□□□□□ -1.92
LIMA1-210ENST00000552045 SBF2Q86WG5 1849 aa3.06□□□□□ -1.92
LIMA1-210ENST00000552045 CDC26Q8NHZ8 85 aa3.06□□□□□ -1.92
LIMA1-210ENST00000552045 ROPN1LQ96C74 230 aa3.06□□□□□ -1.92
LIMA1-210ENST00000552045 MIEN1Q9BRT3 115 aa3.06□□□□□ -1.92
LIMA1-210ENST00000552045 TLNRD1Q9H1K6 362 aa3.06□□□□□ -1.92
LIMA1-210ENST00000552045 CMTM6Q9NX76 183 aa3.06□□□□□ -1.92
LIMA1-210ENST00000552045 GLTPQ9NZD2 209 aa3.06□□□□□ -1.92
LIMA1-210ENST00000552045 PKIGQ9Y2B9 76 aa3.06□□□□□ -1.92
LIMA1-210ENST00000552045 MMACHCQ9Y4U1 282 aa3.06□□□□□ -1.92
LIMA1-210ENST00000552045 ZNF407Q9C0G0 2248 aa3.05□□□□□ -1.92
LIMA1-210ENST00000552045 SIPA1L1O43166 1804 aa3.05□□□□□ -1.92
LIMA1-210ENST00000552045 CPDO75976 1380 aa3.05□□□□□ -1.92
LIMA1-210ENST00000552045 A0A087WUJ7 227 aa3.05□□□□□ -1.92
LIMA1-210ENST00000552045 A0A0J9YX75 114 aa3.05□□□□□ -1.92
LIMA1-210ENST00000552045 TMEM235A6NFC5 223 aa3.05□□□□□ -1.92
LIMA1-210ENST00000552045 IGKV4-1P06312 121 aa3.05□□□□□ -1.92
LIMA1-210ENST00000552045 KCNE1P15382 129 aa3.05□□□□□ -1.92
LIMA1-210ENST00000552045 HIST1H1TP22492 207 aaPredicted RBP3.05□□□□□ -1.92
LIMA1-210ENST00000552045 TAS2R20P59543 309 aa3.05□□□□□ -1.92
LIMA1-210ENST00000552045 SPA17Q15506 151 aa3.05□□□□□ -1.92
LIMA1-210ENST00000552045 LCE3AQ5TA76 89 aa3.05□□□□□ -1.92
LIMA1-210ENST00000552045 KRTAP5-4Q6L8H1 288 aa3.05□□□□□ -1.92
LIMA1-210ENST00000552045 C20orf196Q8IYI0 205 aa3.05□□□□□ -1.92
LIMA1-210ENST00000552045 OR4C16Q8NGL9 310 aa3.05□□□□□ -1.92
LIMA1-210ENST00000552045 SMCR5Q8TEV8 140 aa3.05□□□□□ -1.92
LIMA1-210ENST00000552045 KLK6Q92876 244 aa3.05□□□□□ -1.92
LIMA1-210ENST00000552045 CCDC94Q9BW85 323 aaPredicted RBP3.05□□□□□ -1.92
LIMA1-210ENST00000552045 KRTAP4-4Q9BYR3 166 aa3.05□□□□□ -1.92
LIMA1-210ENST00000552045 TTTY13Q9BZ97 58 aa3.05□□□□□ -1.92
LIMA1-210ENST00000552045 MUC6Q6W4X9 2439 aa3.05□□□□□ -1.92
LIMA1-210ENST00000552045 BRCA2P51587 3418 aa3.05□□□□□ -1.92
LIMA1-210ENST00000552045 LAMA3Q16787 3333 aa3.05□□□□□ -1.92
LIMA1-210ENST00000552045 SDK2Q58EX2 2172 aa3.05□□□□□ -1.92
LIMA1-210ENST00000552045 NYNRINQ9P2P1 1898 aaKnown RBP3.05□□□□□ -1.92
LIMA1-210ENST00000552045 LAMB4A4D0S4 1761 aa3.05□□□□□ -1.92
LIMA1-210ENST00000552045 NHSQ6T4R5 1651 aa3.04□□□□□ -1.92
LIMA1-210ENST00000552045 GCC2Q8IWJ2 1684 aa3.04□□□□□ -1.92
LIMA1-210ENST00000552045 CLTCL1P53675 1640 aa3.04□□□□□ -1.92
LIMA1-210ENST00000552045 DOCK6Q96HP0 2047 aa3.04□□□□□ -1.92
LIMA1-210ENST00000552045 ODF3BA8MYP8 253 aa3.04□□□□□ -1.92
LIMA1-210ENST00000552045 ZNF73O43830 326 aaPredicted RBP3.04□□□□□ -1.92
LIMA1-210ENST00000552045 NPYP01303 97 aa3.04□□□□□ -1.92
LIMA1-210ENST00000552045 CAPZBP47756 277 aa3.04□□□□□ -1.92
LIMA1-210ENST00000552045 FGF13Q92913 245 aa3.04□□□□□ -1.92
LIMA1-210ENST00000552045 C20orf166-AS1Q96NR2 134 aa3.04□□□□□ -1.92
LIMA1-210ENST00000552045 DCSTAMPQ9H295 470 aa3.04□□□□□ -1.92
LIMA1-210ENST00000552045 MRPL27Q9P0M9 148 aaKnown RBP3.04□□□□□ -1.92
LIMA1-210ENST00000552045 FBXO5Q9UKT4 447 aa3.04□□□□□ -1.92
LIMA1-210ENST00000552045 ZFHX4Q86UP3 3567 aa3.04□□□□□ -1.92
LIMA1-210ENST00000552045 LAMA2P24043 3122 aaKnown RBP3.03□□□□□ -1.92
LIMA1-210ENST00000552045 BDP1A6H8Y1 2624 aa3.03□□□□□ -1.92
LIMA1-210ENST00000552045 SDHAF1A6NFY7 115 aa3.03□□□□□ -1.92
LIMA1-210ENST00000552045 KNCNA6PVL3 124 aa3.03□□□□□ -1.92
LIMA1-210ENST00000552045 PLXNB1O43157 2135 aa3.03□□□□□ -1.92
LIMA1-210ENST00000552045 TTRP02766 147 aa3.03□□□□□ -1.92
LIMA1-210ENST00000552045 LGALS3P17931 250 aaKnown RBP3.03□□□□□ -1.92
LIMA1-210ENST00000552045 CD24P25063 80 aa3.03□□□□□ -1.92
LIMA1-210ENST00000552045 POLR2GP62487 172 aaKnown RBP eCLIP3.03□□□□□ -1.92
LIMA1-210ENST00000552045 RPL30P62888 115 aaKnown RBP3.03□□□□□ -1.92
LIMA1-210ENST00000552045 TNFRSF9Q07011 255 aa3.03□□□□□ -1.92
LIMA1-210ENST00000552045 GUK1Q16774 197 aa3.03□□□□□ -1.92
LIMA1-210ENST00000552045 TMEM97Q5BJF2 176 aa3.03□□□□□ -1.92
LIMA1-210ENST00000552045 GLT8D1Q68CQ7 371 aa3.03□□□□□ -1.92
LIMA1-210ENST00000552045 LPCAT3Q6P1A2 487 aa3.03□□□□□ -1.92
LIMA1-210ENST00000552045 BRD3OSQ6XYD6 125 aa3.03□□□□□ -1.92
LIMA1-210ENST00000552045 DGCR14Q96DF8 476 aaKnown RBP3.03□□□□□ -1.92
LIMA1-210ENST00000552045 TUBA4BQ9H853 241 aa3.03□□□□□ -1.92
LIMA1-210ENST00000552045 TRANK1O15050 2925 aa3.03□□□□□ -1.92
LIMA1-210ENST00000552045 CEP290O15078 2479 aa3.03□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms