RNA–Protein interactions for RNA: ENST00000550872.1

CHMP1A-209, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-209ENST00000550872 DUXBA0A1W2PPF3 345 aa12.57□□□□□ -0.4
CHMP1A-209ENST00000550872 FAM223BA6NKX1 122 aa12.57□□□□□ -0.4
CHMP1A-209ENST00000550872 WIPF1O43516 503 aa12.57□□□□□ -0.4
CHMP1A-209ENST00000550872 SULT1A3P0DMM9 295 aa12.57□□□□□ -0.4
CHMP1A-209ENST00000550872 SULT1A4P0DMN0 295 aa12.57□□□□□ -0.4
CHMP1A-209ENST00000550872 HIST1H1BP16401 226 aaKnown RBP12.57□□□□□ -0.4
CHMP1A-209ENST00000550872 NMSQ5H8A3 153 aa12.57□□□□□ -0.4
CHMP1A-209ENST00000550872 ETV3LQ6ZN32 361 aa12.57□□□□□ -0.4
CHMP1A-209ENST00000550872 FAM223AQ8IWN6 122 aa12.57□□□□□ -0.4
CHMP1A-209ENST00000550872 NECAP1Q8NC96 275 aa12.57□□□□□ -0.4
CHMP1A-209ENST00000550872 OR11H1Q8NG94 326 aa12.57□□□□□ -0.4
CHMP1A-209ENST00000550872 OR1N2Q8NGR9 330 aa12.57□□□□□ -0.4
CHMP1A-209ENST00000550872 COQ8AQ8NI60 647 aa12.57□□□□□ -0.4
CHMP1A-209ENST00000550872 DPF1Q92782 380 aa12.57□□□□□ -0.4
CHMP1A-209ENST00000550872 FANCD2OSQ96PS1 177 aa12.57□□□□□ -0.4
CHMP1A-209ENST00000550872 CYB5BO43169 146 aa12.56□□□□□ -0.4
CHMP1A-209ENST00000550872 DUS4LO95620 317 aaKnown RBP12.56□□□□□ -0.4
CHMP1A-209ENST00000550872 HOXB5P09067 269 aa12.56□□□□□ -0.4
CHMP1A-209ENST00000550872 ERHP84090 104 aaKnown RBP12.56□□□□□ -0.4
CHMP1A-209ENST00000550872 SMCO1Q147U7 214 aa12.56□□□□□ -0.4
CHMP1A-209ENST00000550872 SLC25A24Q6NUK1 477 aa12.56□□□□□ -0.4
CHMP1A-209ENST00000550872 P2RX4Q99571 388 aa12.56□□□□□ -0.4
CHMP1A-209ENST00000550872 ENY2Q9NPA8 101 aa12.56□□□□□ -0.4
CHMP1A-209ENST00000550872 IGLV11-55A0A075B6I3 123 aa12.55□□□□□ -0.4
CHMP1A-209ENST00000550872 A0A1B0GU03 582 aa12.55□□□□□ -0.4
CHMP1A-209ENST00000550872 ANKRD34BA5PLL1 514 aa12.55□□□□□ -0.4
CHMP1A-209ENST00000550872 NDUFB8O95169 186 aa12.55□□□□□ -0.4
CHMP1A-209ENST00000550872 HOXA1P49639 335 aaPredicted RBP12.55□□□□□ -0.4
CHMP1A-209ENST00000550872 SPCS3P61009 180 aa12.55□□□□□ -0.4
CHMP1A-209ENST00000550872 ZNF616Q08AN1 781 aa12.55□□□□□ -0.4
CHMP1A-209ENST00000550872 C15orf32Q32M92 178 aa12.55□□□□□ -0.4
CHMP1A-209ENST00000550872 AARDQ4LEZ3 155 aa12.55□□□□□ -0.4
CHMP1A-209ENST00000550872 NRARPQ7Z6K4 114 aa12.55□□□□□ -0.4
CHMP1A-209ENST00000550872 OR2C3Q8N628 320 aa12.55□□□□□ -0.4
CHMP1A-209ENST00000550872 OR52B4Q8NGK2 314 aa12.55□□□□□ -0.4
CHMP1A-209ENST00000550872 OR52E5Q8NH55 327 aa12.55□□□□□ -0.4
CHMP1A-209ENST00000550872 OR1S1Q8NH92 325 aa12.55□□□□□ -0.4
CHMP1A-209ENST00000550872 TMED3Q9Y3Q3 217 aa12.55□□□□□ -0.4
CHMP1A-209ENST00000550872 F11RQ9Y624 299 aaKnown RBP12.55□□□□□ -0.4
CHMP1A-209ENST00000550872 TRRAPQ9Y4A5 3859 aa12.54□□□□□ -0.4
CHMP1A-209ENST00000550872 NXPH3O95157 252 aa12.54□□□□□ -0.4
CHMP1A-209ENST00000550872 HSPB1P04792 205 aaKnown RBP12.54□□□□□ -0.4
CHMP1A-209ENST00000550872 CD33P20138 364 aa12.54□□□□□ -0.4
CHMP1A-209ENST00000550872 EXOSC2Q13868 293 aaKnown RBP12.54□□□□□ -0.4
CHMP1A-209ENST00000550872 KLK9Q2XQG4 91 aa12.54□□□□□ -0.4
CHMP1A-209ENST00000550872 GGNBP1Q5YKI7 109 aa12.54□□□□□ -0.4
CHMP1A-209ENST00000550872 ZNF343Q6P1L6 599 aa12.54□□□□□ -0.4
CHMP1A-209ENST00000550872 LINC00482Q8N8I6 264 aa12.54□□□□□ -0.4
CHMP1A-209ENST00000550872 DUSP18Q8NEJ0 188 aa12.54□□□□□ -0.4
CHMP1A-209ENST00000550872 OR1L6Q8NGR2 347 aa12.54□□□□□ -0.4
CHMP1A-209ENST00000550872 THYN1Q9P016 225 aa12.54□□□□□ -0.4
CHMP1A-209ENST00000550872 CACFD1Q9UGQ2 172 aa12.54□□□□□ -0.4
CHMP1A-209ENST00000550872 KLK9Q9UKQ9 250 aa12.54□□□□□ -0.4
CHMP1A-209ENST00000550872 IGHV4OR15-8A0A075B7B6 117 aa12.53□□□□□ -0.4
CHMP1A-209ENST00000550872 A0A087WW49 117 aa12.53□□□□□ -0.4
CHMP1A-209ENST00000550872 CEBPZOSA8MTT3 80 aa12.53□□□□□ -0.4
CHMP1A-209ENST00000550872 LINC01619G3V211 115 aa12.53□□□□□ -0.4
CHMP1A-209ENST00000550872 ADAP1O75689 374 aa12.53□□□□□ -0.4
CHMP1A-209ENST00000550872 OR8U8P0C7N1 319 aa12.53□□□□□ -0.4
CHMP1A-209ENST00000550872 SNCAP37840 140 aa12.53□□□□□ -0.4
CHMP1A-209ENST00000550872 MFAP2P55001 183 aa12.53□□□□□ -0.4
CHMP1A-209ENST00000550872 WFDC9Q8NEX5 89 aa12.53□□□□□ -0.4
CHMP1A-209ENST00000550872 OR1P1Q8NH06 330 aa12.53□□□□□ -0.4
CHMP1A-209ENST00000550872 MITD1Q8WV92 249 aa12.53□□□□□ -0.4
CHMP1A-209ENST00000550872 SEC22CQ9BRL7 303 aa12.53□□□□□ -0.4
CHMP1A-209ENST00000550872 RANGRFQ9HD47 186 aaPredicted RBP12.53□□□□□ -0.4
CHMP1A-209ENST00000550872 PEF1Q9UBV8 284 aaKnown RBP12.53□□□□□ -0.4
CHMP1A-209ENST00000550872 DMRT1Q9Y5R6 373 aa12.53□□□□□ -0.4
CHMP1A-209ENST00000550872 S4R3C0 116 aa12.53□□□□□ -0.4
CHMP1A-209ENST00000550872 INS-IGF2F8WCM5 200 aa12.52□□□□□ -0.41
CHMP1A-209ENST00000550872 IFNA21P01568 189 aa12.52□□□□□ -0.41
CHMP1A-209ENST00000550872 SLC25A6P12236 298 aa12.52□□□□□ -0.41
CHMP1A-209ENST00000550872 FHL3Q13643 280 aa12.52□□□□□ -0.41
CHMP1A-209ENST00000550872 PLET1Q6UQ28 207 aa12.52□□□□□ -0.41
CHMP1A-209ENST00000550872 ZNF431Q8TF32 576 aaPredicted RBP12.52□□□□□ -0.41
CHMP1A-209ENST00000550872 EEF1AKMT3Q96AZ1 226 aa12.52□□□□□ -0.41
CHMP1A-209ENST00000550872 HEYLQ9NQ87 328 aaPredicted RBP12.52□□□□□ -0.41
CHMP1A-209ENST00000550872 INMT-MINDY4F8WBC2 141 aa12.51□□□□□ -0.41
CHMP1A-209ENST00000550872 IGHV3-23P01764 117 aa12.51□□□□□ -0.41
CHMP1A-209ENST00000550872 SUB1P53999 127 aaKnown RBP eCLIP12.51□□□□□ -0.41
CHMP1A-209ENST00000550872 SLURP1P55000 103 aa12.51□□□□□ -0.41
CHMP1A-209ENST00000550872 TNFRSF9Q07011 255 aa12.51□□□□□ -0.41
CHMP1A-209ENST00000550872 PDLIM3Q53GG5 364 aaPredicted RBP12.51□□□□□ -0.41
CHMP1A-209ENST00000550872 UXS1Q8NBZ7 420 aa12.51□□□□□ -0.41
CHMP1A-209ENST00000550872 ZNF114Q8NC26 417 aa12.51□□□□□ -0.41
CHMP1A-209ENST00000550872 MISP3Q96FF7 219 aa12.51□□□□□ -0.41
CHMP1A-209ENST00000550872 CXorf58Q96LI9 332 aa12.51□□□□□ -0.41
CHMP1A-209ENST00000550872 HSPB7Q9UBY9 170 aa12.51□□□□□ -0.41
CHMP1A-209ENST00000550872 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.5□□□□□ -0.41
CHMP1A-209ENST00000550872 IGHV3-21A0A0B4J1V1 117 aa12.5□□□□□ -0.41
CHMP1A-209ENST00000550872 MFSD2BA6NFX1 497 aa12.5□□□□□ -0.41
CHMP1A-209ENST00000550872 PITX3O75364 302 aa12.5□□□□□ -0.41
CHMP1A-209ENST00000550872 TRBV12-3P01733 135 aa12.5□□□□□ -0.41
CHMP1A-209ENST00000550872 IL5P05113 134 aa12.5□□□□□ -0.41
CHMP1A-209ENST00000550872 FAM209BQ5JX69 171 aa12.5□□□□□ -0.41
CHMP1A-209ENST00000550872 C12orf45Q8N5I9 185 aaPredicted RBP12.5□□□□□ -0.41
CHMP1A-209ENST00000550872 VN1R17PQ8TDU5 208 aa12.5□□□□□ -0.41
CHMP1A-209ENST00000550872 DCUN1D4Q92564 292 aa12.5□□□□□ -0.41
CHMP1A-209ENST00000550872 HIPK2Q9H2X6 1198 aa12.5□□□□□ -0.41
CHMP1A-209ENST00000550872 RBKSQ9H477 322 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms