RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 WDR86Q86TI4 376 aa12.46□□□□□ -0.41
CUX1-214ENST00000550008 Q8WTZ3 238 aa12.46□□□□□ -0.41
CUX1-214ENST00000550008 CHD8Q9HCK8 2581 aa12.46□□□□□ -0.41
CUX1-214ENST00000550008 NDUFA2O43678 99 aa12.46□□□□□ -0.41
CUX1-214ENST00000550008 PRNTQ86SH4 94 aa12.46□□□□□ -0.41
CUX1-214ENST00000550008 TMEM186Q96B77 213 aa12.46□□□□□ -0.41
CUX1-214ENST00000550008 C1QTNF9BB2RNN3 333 aa12.46□□□□□ -0.42
CUX1-214ENST00000550008 RNF224P0DH78 156 aa12.46□□□□□ -0.42
CUX1-214ENST00000550008 GCHFRP30047 84 aa12.46□□□□□ -0.42
CUX1-214ENST00000550008 DNM1P46Q6ZS02 220 aa12.46□□□□□ -0.42
CUX1-214ENST00000550008 LHFPL4Q7Z7J7 247 aa12.46□□□□□ -0.42
CUX1-214ENST00000550008 ALPK3Q96L96 1907 aa12.46□□□□□ -0.42
CUX1-214ENST00000550008 ANKRD11Q6UB99 2663 aaPredicted RBP12.46□□□□□ -0.42
CUX1-214ENST00000550008 A0A0G2JNJ9 132 aa12.46□□□□□ -0.42
CUX1-214ENST00000550008 P01737 135 aa12.46□□□□□ -0.42
CUX1-214ENST00000550008 HIST1H1BP16401 226 aaKnown RBP12.46□□□□□ -0.42
CUX1-214ENST00000550008 S100A4P26447 101 aaKnown RBP12.46□□□□□ -0.42
CUX1-214ENST00000550008 OR10W1Q8NGF6 305 aa12.46□□□□□ -0.42
CUX1-214ENST00000550008 C1RLQ9NZP8 487 aa12.46□□□□□ -0.42
CUX1-214ENST00000550008 Q9UFV3 132 aa12.46□□□□□ -0.42
CUX1-214ENST00000550008 EML6Q6ZMW3 1958 aa12.45□□□□□ -0.42
CUX1-214ENST00000550008 IGKV1D-17A0A075B6S4 117 aa12.45□□□□□ -0.42
CUX1-214ENST00000550008 YPEL1O60688 119 aa12.45□□□□□ -0.42
CUX1-214ENST00000550008 ICAM4Q14773 271 aa12.45□□□□□ -0.42
CUX1-214ENST00000550008 Q6ZS92 163 aa12.45□□□□□ -0.42
CUX1-214ENST00000550008 RNASE6Q93091 150 aaKnown RBP12.45□□□□□ -0.42
CUX1-214ENST00000550008 YPEL2Q96QA6 119 aa12.45□□□□□ -0.42
CUX1-214ENST00000550008 RNF2Q99496 336 aa12.45□□□□□ -0.42
CUX1-214ENST00000550008 C8orf88P0DMB2 117 aa12.45□□□□□ -0.42
CUX1-214ENST00000550008 HIGD1AQ9Y241 93 aa12.45□□□□□ -0.42
CUX1-214ENST00000550008 LOC105371242A0A075B767 164 aa12.45□□□□□ -0.42
CUX1-214ENST00000550008 SLC17A3O00476 420 aa12.45□□□□□ -0.42
CUX1-214ENST00000550008 IGKV3-15P01624 115 aa12.45□□□□□ -0.42
CUX1-214ENST00000550008 IGHV3-23P01764 117 aa12.45□□□□□ -0.42
CUX1-214ENST00000550008 TRGC1P0CF51 173 aa12.45□□□□□ -0.42
CUX1-214ENST00000550008 LCN2P80188 198 aa12.45□□□□□ -0.42
CUX1-214ENST00000550008 Q6ZR03 302 aa12.45□□□□□ -0.42
CUX1-214ENST00000550008 RBM14Q96PK6 669 aaKnown RBP12.45□□□□□ -0.42
CUX1-214ENST00000550008 TMEM50AO95807 157 aa12.44□□□□□ -0.42
CUX1-214ENST00000550008 LIPFP07098 398 aa12.44□□□□□ -0.42
CUX1-214ENST00000550008 AGAP20933 346 aa12.44□□□□□ -0.42
CUX1-214ENST00000550008 P2RX4Q99571 388 aa12.44□□□□□ -0.42
CUX1-214ENST00000550008 VAMP8Q9BV40 100 aa12.44□□□□□ -0.42
CUX1-214ENST00000550008 SCO2A0A1W2PP80 73 aa12.44□□□□□ -0.42
CUX1-214ENST00000550008 GRIFINA4D1Z8 144 aa12.44□□□□□ -0.42
CUX1-214ENST00000550008 ACAA1P09110 424 aaPredicted RBP12.44□□□□□ -0.42
CUX1-214ENST00000550008 FCGR2BP31994 310 aaPredicted RBP12.44□□□□□ -0.42
CUX1-214ENST00000550008 C9JQL5 133 aa12.44□□□□□ -0.42
CUX1-214ENST00000550008 TIMP3P35625 211 aa12.44□□□□□ -0.42
CUX1-214ENST00000550008 MIR17HGQ75NE6 70 aa12.44□□□□□ -0.42
CUX1-214ENST00000550008 ZCCHC14Q8WYQ9 949 aaKnown RBP12.44□□□□□ -0.42
CUX1-214ENST00000550008 GOLT1BQ9Y3E0 138 aa12.44□□□□□ -0.42
CUX1-214ENST00000550008 LINC00312Q9Y6C7 94 aa12.44□□□□□ -0.42
CUX1-214ENST00000550008 PTPRSQ13332 1948 aa12.44□□□□□ -0.42
CUX1-214ENST00000550008 SONP18583 2426 aaKnown RBP12.44□□□□□ -0.42
CUX1-214ENST00000550008 CGB1A6NKQ9 187 aa12.44□□□□□ -0.42
CUX1-214ENST00000550008 HNRNPA3P51991 378 aaKnown RBP12.44□□□□□ -0.42
CUX1-214ENST00000550008 RNF138Q8WVD3 245 aa12.44□□□□□ -0.42
CUX1-214ENST00000550008 IGHV3-49A0A0A0MS15 119 aa12.43□□□□□ -0.42
CUX1-214ENST00000550008 HLA-DRB5Q30154 266 aa12.43□□□□□ -0.42
CUX1-214ENST00000550008 DUX4L9Q6RFH8 374 aaPredicted RBP12.43□□□□□ -0.42
CUX1-214ENST00000550008 PITPNC1Q9UKF7 332 aa12.43□□□□□ -0.42
CUX1-214ENST00000550008 ELOA3CA0A087WX78 387 aaPredicted RBP12.43□□□□□ -0.42
CUX1-214ENST00000550008 K7EM74 188 aa12.43□□□□□ -0.42
CUX1-214ENST00000550008 TDGF1P13385 188 aa12.43□□□□□ -0.42
CUX1-214ENST00000550008 DDTP30046 118 aa12.43□□□□□ -0.42
CUX1-214ENST00000550008 TBR1Q16650 682 aa12.43□□□□□ -0.42
CUX1-214ENST00000550008 KIR3DL3Q8N743 410 aa12.43□□□□□ -0.42
CUX1-214ENST00000550008 MBD3L4A6NDZ8 208 aaPredicted RBP12.43□□□□□ -0.42
CUX1-214ENST00000550008 MBD3L3A6NE82 208 aaPredicted RBP12.43□□□□□ -0.42
CUX1-214ENST00000550008 MBD3L5A6NJ08 208 aaPredicted RBP12.43□□□□□ -0.42
CUX1-214ENST00000550008 DLX1P56177 255 aa12.43□□□□□ -0.42
CUX1-214ENST00000550008 IBA57Q5T440 356 aaKnown RBP12.43□□□□□ -0.42
CUX1-214ENST00000550008 MBD3L2Q8NHZ7 208 aaPredicted RBP12.43□□□□□ -0.42
CUX1-214ENST00000550008 TNCP24821 2201 aa12.43□□□□□ -0.42
CUX1-214ENST00000550008 DPRXA6NFQ7 191 aa12.42□□□□□ -0.42
CUX1-214ENST00000550008 LY6EQ16553 131 aa12.42□□□□□ -0.42
CUX1-214ENST00000550008 CCDC144NLQ6NUI1 221 aa12.42□□□□□ -0.42
CUX1-214ENST00000550008 ORM1P02763 201 aa12.42□□□□□ -0.42
CUX1-214ENST00000550008 SELENOTP62341 195 aa12.42□□□□□ -0.42
CUX1-214ENST00000550008 ZNF585BQ52M93 769 aa12.42□□□□□ -0.42
CUX1-214ENST00000550008 SSX8Q7RTT4 187 aa12.42□□□□□ -0.42
CUX1-214ENST00000550008 RPP25LQ8N5L8 163 aaKnown RBP12.42□□□□□ -0.42
CUX1-214ENST00000550008 OSR1Q8TAX0 266 aaPredicted RBP12.42□□□□□ -0.42
CUX1-214ENST00000550008 IFI27L2Q9H2X8 130 aa12.42□□□□□ -0.42
CUX1-214ENST00000550008 HSPB7Q9UBY9 170 aa12.42□□□□□ -0.42
CUX1-214ENST00000550008 DMRT1Q9Y5R6 373 aa12.42□□□□□ -0.42
CUX1-214ENST00000550008 ADCYAP1P18509 176 aa12.42□□□□□ -0.42
CUX1-214ENST00000550008 UNQ5815/PRO19632Q6UWF5 114 aa12.42□□□□□ -0.42
CUX1-214ENST00000550008 FA2HQ7L5A8 372 aa12.42□□□□□ -0.42
CUX1-214ENST00000550008 AUP1Q9Y679 476 aa12.42□□□□□ -0.42
CUX1-214ENST00000550008 MBNL2Q5VZF2 373 aaKnown RBP12.41□□□□□ -0.42
CUX1-214ENST00000550008 PRSS3P2Q8NHM4 247 aa12.41□□□□□ -0.42
CUX1-214ENST00000550008 ELOVL1Q9BW60 279 aa12.41□□□□□ -0.42
CUX1-214ENST00000550008 A1L4Q6 167 aa12.41□□□□□ -0.42
CUX1-214ENST00000550008 TCF21O43680 179 aa12.41□□□□□ -0.42
CUX1-214ENST00000550008 IGLV3-1P01715 115 aa12.41□□□□□ -0.42
CUX1-214ENST00000550008 CBLN1P23435 193 aa12.41□□□□□ -0.42
CUX1-214ENST00000550008 SRSF4Q08170 494 aaKnown RBP12.41□□□□□ -0.42
CUX1-214ENST00000550008 WFDC3Q8IUB2 231 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms