RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 CEACAM19Q7Z692 300 aa4.63□□□□□ -1.67
LIMA1-204ENST00000549064 TTC9CQ8N5M4 171 aa4.63□□□□□ -1.67
LIMA1-204ENST00000549064 OR13C5Q8NGS8 318 aa4.63□□□□□ -1.67
LIMA1-204ENST00000549064 OR5AK2Q8NH90 309 aa4.63□□□□□ -1.67
LIMA1-204ENST00000549064 MARC2Q969Z3 335 aa4.63□□□□□ -1.67
LIMA1-204ENST00000549064 ZNF184Q99676 751 aaPredicted RBP4.63□□□□□ -1.67
LIMA1-204ENST00000549064 SELENOIQ9C0D9 397 aa4.63□□□□□ -1.67
LIMA1-204ENST00000549064 C6orf62Q9GZU0 229 aaPredicted RBP4.63□□□□□ -1.67
LIMA1-204ENST00000549064 RIBC2Q9H4K1 309 aa4.63□□□□□ -1.67
LIMA1-204ENST00000549064 PAK1IP1Q9NWT1 392 aaPredicted RBP4.63□□□□□ -1.67
LIMA1-204ENST00000549064 ABRACLQ9P1F3 81 aa4.63□□□□□ -1.67
LIMA1-204ENST00000549064 IGHV3OR16-8A0A075B7F1 116 aa4.62□□□□□ -1.67
LIMA1-204ENST00000549064 MFSD2BA6NFX1 497 aa4.62□□□□□ -1.67
LIMA1-204ENST00000549064 TMEM212A6NML5 194 aa4.62□□□□□ -1.67
LIMA1-204ENST00000549064 PRAC2D3DTV9 90 aa4.62□□□□□ -1.67
LIMA1-204ENST00000549064 J3QRE1 110 aa4.62□□□□□ -1.67
LIMA1-204ENST00000549064 PDCD6O75340 191 aa4.62□□□□□ -1.67
LIMA1-204ENST00000549064 MGMTP16455 207 aa4.62□□□□□ -1.67
LIMA1-204ENST00000549064 GPR183P32249 361 aa4.62□□□□□ -1.67
LIMA1-204ENST00000549064 POLR2IP36954 125 aaKnown RBP4.62□□□□□ -1.67
LIMA1-204ENST00000549064 CEACAM6P40199 344 aa4.62□□□□□ -1.67
LIMA1-204ENST00000549064 MNAT1P51948 309 aa4.62□□□□□ -1.67
LIMA1-204ENST00000549064 SPHARQ15513 63 aa4.62□□□□□ -1.67
LIMA1-204ENST00000549064 LRRC37A5PQ49AS3 106 aa4.62□□□□□ -1.67
LIMA1-204ENST00000549064 GLIPR1L1Q6UWM5 242 aa4.62□□□□□ -1.67
LIMA1-204ENST00000549064 DNAJC9Q8WXX5 260 aa4.62□□□□□ -1.67
LIMA1-204ENST00000549064 CCDC124Q96CT7 223 aaKnown RBP4.62□□□□□ -1.67
LIMA1-204ENST00000549064 ZNF479Q96JC4 524 aa4.62□□□□□ -1.67
LIMA1-204ENST00000549064 ST6GAL2Q96JF0 529 aa4.62□□□□□ -1.67
LIMA1-204ENST00000549064 ZNF430Q9H8G1 570 aaPredicted RBP4.62□□□□□ -1.67
LIMA1-204ENST00000549064 TMEM138Q9NPI0 162 aa4.62□□□□□ -1.67
LIMA1-204ENST00000549064 ZNF221Q9UK13 617 aa4.62□□□□□ -1.67
LIMA1-204ENST00000549064 GMPPBQ9Y5P6 360 aa4.62□□□□□ -1.67
LIMA1-204ENST00000549064 IGKV3-7A0A075B6H7 116 aa4.61□□□□□ -1.67
LIMA1-204ENST00000549064 A0A1W2PS18 150 aa4.61□□□□□ -1.67
LIMA1-204ENST00000549064 ITGB1BP1O14713 200 aa4.61□□□□□ -1.67
LIMA1-204ENST00000549064 ZNF207O43670 478 aaKnown RBP4.61□□□□□ -1.67
LIMA1-204ENST00000549064 CRTAPO75718 401 aaPredicted RBP4.61□□□□□ -1.67
LIMA1-204ENST00000549064 TSHBP01222 138 aa4.61□□□□□ -1.67
LIMA1-204ENST00000549064 GIG44P09565 113 aaPredicted RBP4.61□□□□□ -1.67
LIMA1-204ENST00000549064 GALP22466 123 aa4.61□□□□□ -1.67
LIMA1-204ENST00000549064 CAPGP40121 348 aa4.61□□□□□ -1.67
LIMA1-204ENST00000549064 GTF2A1P52655 376 aaPredicted RBP4.61□□□□□ -1.67
LIMA1-204ENST00000549064 UBE2KP61086 200 aa4.61□□□□□ -1.67
LIMA1-204ENST00000549064 SSTP61278 116 aa4.61□□□□□ -1.67
LIMA1-204ENST00000549064 PPP3R1P63098 170 aa4.61□□□□□ -1.67
LIMA1-204ENST00000549064 GPR176Q14439 515 aa4.61□□□□□ -1.67
LIMA1-204ENST00000549064 VMA21Q3ZAQ7 101 aa4.61□□□□□ -1.67
LIMA1-204ENST00000549064 AWAT2Q6E213 333 aa4.61□□□□□ -1.67
LIMA1-204ENST00000549064 LAMTOR1Q6IAA8 161 aa4.61□□□□□ -1.67
LIMA1-204ENST00000549064 LHFPL3Q86UP9 236 aa4.61□□□□□ -1.67
LIMA1-204ENST00000549064 CENPSQ8N2Z9 138 aa4.61□□□□□ -1.67
LIMA1-204ENST00000549064 TMEM190Q8WZ59 177 aa4.61□□□□□ -1.67
LIMA1-204ENST00000549064 EEF1AKMT3Q96AZ1 226 aa4.61□□□□□ -1.67
LIMA1-204ENST00000549064 ASB9Q96DX5 294 aa4.61□□□□□ -1.67
LIMA1-204ENST00000549064 TXN2Q99757 166 aa4.61□□□□□ -1.67
LIMA1-204ENST00000549064 FAAP24Q9BTP7 215 aa4.61□□□□□ -1.67
LIMA1-204ENST00000549064 MDFICQ9P1T7 246 aa4.61□□□□□ -1.67
LIMA1-204ENST00000549064 ZNF257Q9Y2Q1 563 aa4.61□□□□□ -1.67
LIMA1-204ENST00000549064 RRP15Q9Y3B9 282 aaKnown RBP4.61□□□□□ -1.67
LIMA1-204ENST00000549064 UFC1Q9Y3C8 167 aa4.61□□□□□ -1.67
LIMA1-204ENST00000549064 LRRC42Q9Y546 428 aa4.61□□□□□ -1.67
LIMA1-204ENST00000549064 A0A1B0GW64 132 aa4.6□□□□□ -1.67
LIMA1-204ENST00000549064 C15orf61A6NNL5 157 aa4.6□□□□□ -1.67
LIMA1-204ENST00000549064 E7EUB6 86 aa4.6□□□□□ -1.67
LIMA1-204ENST00000549064 FKBP6O75344 327 aa4.6□□□□□ -1.67
LIMA1-204ENST00000549064 DFFBO76075 338 aa4.6□□□□□ -1.67
LIMA1-204ENST00000549064 CRYZL1O95825 349 aa4.6□□□□□ -1.67
LIMA1-204ENST00000549064 GLAP06280 429 aa4.6□□□□□ -1.67
LIMA1-204ENST00000549064 CD2P06729 351 aa4.6□□□□□ -1.67
LIMA1-204ENST00000549064 SAA1P0DJI8 122 aaPredicted RBP4.6□□□□□ -1.67
LIMA1-204ENST00000549064 MIFP14174 115 aa4.6□□□□□ -1.67
LIMA1-204ENST00000549064 RPS27AP62979 156 aaKnown RBP4.6□□□□□ -1.67
LIMA1-204ENST00000549064 TMED1Q13445 227 aa4.6□□□□□ -1.67
LIMA1-204ENST00000549064 LEMD1Q68G75 181 aa4.6□□□□□ -1.67
LIMA1-204ENST00000549064 XAF1Q6GPH4 301 aa4.6□□□□□ -1.67
LIMA1-204ENST00000549064 ZNF880Q6PDB4 577 aa4.6□□□□□ -1.67
LIMA1-204ENST00000549064 SSX9Q7RTT3 188 aa4.6□□□□□ -1.67
LIMA1-204ENST00000549064 C6orf201Q7Z4U5 140 aa4.6□□□□□ -1.67
LIMA1-204ENST00000549064 C6orf223Q8N319 242 aa4.6□□□□□ -1.67
LIMA1-204ENST00000549064 JAGN1Q8N5M9 183 aa4.6□□□□□ -1.67
LIMA1-204ENST00000549064 ACBD7Q8N6N7 88 aa4.6□□□□□ -1.67
LIMA1-204ENST00000549064 SPIN2AQ99865 258 aa4.6□□□□□ -1.67
LIMA1-204ENST00000549064 SPIN2BQ9BPZ2 258 aa4.6□□□□□ -1.67
LIMA1-204ENST00000549064 HDHD3Q9BSH5 251 aaPredicted RBP4.6□□□□□ -1.67
LIMA1-204ENST00000549064 FUNDC2Q9BWH2 189 aa4.6□□□□□ -1.67
LIMA1-204ENST00000549064 KRTAP9-9Q9BYP9 154 aa4.6□□□□□ -1.67
LIMA1-204ENST00000549064 KRTAP9-2Q9BYQ4 174 aa4.6□□□□□ -1.67
LIMA1-204ENST00000549064 ZNF436Q9C0F3 470 aaPredicted RBP4.6□□□□□ -1.67
LIMA1-204ENST00000549064 SDHAF2Q9NX18 166 aa4.6□□□□□ -1.67
LIMA1-204ENST00000549064 TRAV8-7A0A075B6U6 113 aa4.59□□□□□ -1.67
LIMA1-204ENST00000549064 IGHV3-49A0A0A0MS15 119 aa4.59□□□□□ -1.67
LIMA1-204ENST00000549064 IGKV1-6A0A0C4DH72 117 aa4.59□□□□□ -1.67
LIMA1-204ENST00000549064 ZNF705EA8MWA4 302 aaPredicted RBP4.59□□□□□ -1.67
LIMA1-204ENST00000549064 MRPS14O60783 128 aaKnown RBP4.59□□□□□ -1.67
LIMA1-204ENST00000549064 NAPSAO96009 420 aa4.59□□□□□ -1.67
LIMA1-204ENST00000549064 REG1AP05451 166 aa4.59□□□□□ -1.67
LIMA1-204ENST00000549064 GSTT2P0CG29 244 aa4.59□□□□□ -1.67
LIMA1-204ENST00000549064 GSTT2BP0CG30 244 aa4.59□□□□□ -1.67
LIMA1-204ENST00000549064 IGFBP3P17936 291 aaPredicted RBP4.59□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms