RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 Q8NAQ8 132 aa12.32□□□□□ -0.44
VPS29-204ENST00000548259 DGCR14Q96DF8 476 aaKnown RBP12.32□□□□□ -0.44
VPS29-204ENST00000548259 OR10C1Q96KK4 312 aa12.32□□□□□ -0.44
VPS29-204ENST00000548259 TMEM56Q96MV1 263 aa12.32□□□□□ -0.44
VPS29-204ENST00000548259 SLC5A7Q9GZV3 580 aa12.32□□□□□ -0.44
VPS29-204ENST00000548259 IGHV3-49A0A0A0MS15 119 aa12.31□□□□□ -0.44
VPS29-204ENST00000548259 IGHV4-28A0A0C4DH34 117 aa12.31□□□□□ -0.44
VPS29-204ENST00000548259 TEX50A0A1B0GTY4 177 aa12.31□□□□□ -0.44
VPS29-204ENST00000548259 TMEM235A6NFC5 223 aa12.31□□□□□ -0.44
VPS29-204ENST00000548259 CTSGP08311 255 aa12.31□□□□□ -0.44
VPS29-204ENST00000548259 RPL11P62913 178 aaKnown RBP12.31□□□□□ -0.44
VPS29-204ENST00000548259 AADACL3Q5VUY0 350 aa12.31□□□□□ -0.44
VPS29-204ENST00000548259 ZNF773Q6PK81 442 aa12.31□□□□□ -0.44
VPS29-204ENST00000548259 Q6ZTC4 211 aa12.31□□□□□ -0.44
VPS29-204ENST00000548259 TXN2Q99757 166 aa12.31□□□□□ -0.44
VPS29-204ENST00000548259 TMEM231Q9H6L2 316 aa12.31□□□□□ -0.44
VPS29-204ENST00000548259 FKBP11Q9NYL4 201 aa12.31□□□□□ -0.44
VPS29-204ENST00000548259 DNAH6Q9C0G6 4158 aa12.31□□□□□ -0.44
VPS29-204ENST00000548259 TRAV2A0A0B4J234 112 aa12.3□□□□□ -0.44
VPS29-204ENST00000548259 K7EIM0 57 aa12.3□□□□□ -0.44
VPS29-204ENST00000548259 PPYP01298 95 aa12.3□□□□□ -0.44
VPS29-204ENST00000548259 MFAP4P55083 255 aa12.3□□□□□ -0.44
VPS29-204ENST00000548259 DEFB131AP59861 70 aa12.3□□□□□ -0.44
VPS29-204ENST00000548259 SOHLH1Q5JUK2 328 aa12.3□□□□□ -0.44
VPS29-204ENST00000548259 FAM90A2PQ658T7 463 aa12.3□□□□□ -0.44
VPS29-204ENST00000548259 MORN3Q6PF18 240 aaPredicted RBP12.3□□□□□ -0.44
VPS29-204ENST00000548259 DUSP18Q8NEJ0 188 aa12.3□□□□□ -0.44
VPS29-204ENST00000548259 BEST4Q8NFU0 473 aa12.3□□□□□ -0.44
VPS29-204ENST00000548259 TSPAN14Q8NG11 270 aa12.3□□□□□ -0.44
VPS29-204ENST00000548259 OR51H1Q8NH63 302 aa12.3□□□□□ -0.44
VPS29-204ENST00000548259 NDUFAF3Q9BU61 184 aa12.3□□□□□ -0.44
VPS29-204ENST00000548259 NDUFA4L2Q9NRX3 87 aa12.3□□□□□ -0.44
VPS29-204ENST00000548259 PKHD1P08F94 4074 aa12.29□□□□□ -0.44
VPS29-204ENST00000548259 MARCH11A6NNE9 402 aa12.29□□□□□ -0.44
VPS29-204ENST00000548259 F8W735 103 aaPredicted RBP12.29□□□□□ -0.44
VPS29-204ENST00000548259 ST8SIA3O43173 380 aa12.29□□□□□ -0.44
VPS29-204ENST00000548259 AMBPP02760 352 aa12.29□□□□□ -0.44
VPS29-204ENST00000548259 SPP1P10451 314 aa12.29□□□□□ -0.44
VPS29-204ENST00000548259 OGFRL1Q5TC84 451 aaPredicted RBP12.29□□□□□ -0.44
VPS29-204ENST00000548259 LEMD1Q68G75 181 aa12.29□□□□□ -0.44
VPS29-204ENST00000548259 OR1P1Q8NH06 330 aa12.29□□□□□ -0.44
VPS29-204ENST00000548259 GIMAP1Q8WWP7 306 aa12.29□□□□□ -0.44
VPS29-204ENST00000548259 DUSP21Q9H596 190 aa12.29□□□□□ -0.44
VPS29-204ENST00000548259 OR51B2Q9Y5P1 312 aa12.29□□□□□ -0.44
VPS29-204ENST00000548259 GNG7O60262 68 aa12.28□□□□□ -0.44
VPS29-204ENST00000548259 RBMY1A1P0DJD3 496 aaKnown RBP12.28□□□□□ -0.44
VPS29-204ENST00000548259 RBMY1CP0DJD4 496 aa12.28□□□□□ -0.44
VPS29-204ENST00000548259 NPY1RP25929 384 aa12.28□□□□□ -0.44
VPS29-204ENST00000548259 FXYD4P59646 89 aa12.28□□□□□ -0.44
VPS29-204ENST00000548259 RBMY1FQ15415 496 aaKnown RBP12.28□□□□□ -0.44
VPS29-204ENST00000548259 LGALS9BQ3B8N2 356 aa12.28□□□□□ -0.44
VPS29-204ENST00000548259 PRSS48Q7RTY5 328 aa12.28□□□□□ -0.44
VPS29-204ENST00000548259 TPRA1Q86W33 373 aa12.28□□□□□ -0.44
VPS29-204ENST00000548259 SLC25A46Q96AG3 418 aa12.28□□□□□ -0.44
VPS29-204ENST00000548259 NXF2Q9GZY0 626 aaKnown RBP12.28□□□□□ -0.44
VPS29-204ENST00000548259 MS4A6AQ9H2W1 248 aa12.28□□□□□ -0.44
VPS29-204ENST00000548259 PRNDQ9UKY0 176 aa12.28□□□□□ -0.44
VPS29-204ENST00000548259 IGHV3OR16-13A0A075B7E8 117 aa12.27□□□□□ -0.45
VPS29-204ENST00000548259 DEFB131BA0A096LNP1 70 aa12.27□□□□□ -0.45
VPS29-204ENST00000548259 IGHV3-74A0A0B4J1X5 117 aa12.27□□□□□ -0.45
VPS29-204ENST00000548259 M0R2N4 97 aa12.27□□□□□ -0.45
VPS29-204ENST00000548259 RTL8CO15255 209 aa12.27□□□□□ -0.45
VPS29-204ENST00000548259 CADM3Q8N126 398 aa12.27□□□□□ -0.45
VPS29-204ENST00000548259 MISP3Q96FF7 219 aa12.27□□□□□ -0.45
VPS29-204ENST00000548259 TSC22D3Q99576 134 aa12.27□□□□□ -0.45
VPS29-204ENST00000548259 RABAC1Q9UI14 185 aa12.27□□□□□ -0.45
VPS29-204ENST00000548259 TBC1D24Q9ULP9 559 aa12.27□□□□□ -0.45
VPS29-204ENST00000548259 TRDV1A0A1B0GX56 115 aa12.26□□□□□ -0.45
VPS29-204ENST00000548259 ZNF705EA8MWA4 302 aaPredicted RBP12.26□□□□□ -0.45
VPS29-204ENST00000548259 SSX5O60225 188 aa12.26□□□□□ -0.45
VPS29-204ENST00000548259 IFNA10P01566 189 aa12.26□□□□□ -0.45
VPS29-204ENST00000548259 IFNA21P01568 189 aa12.26□□□□□ -0.45
VPS29-204ENST00000548259 IFNA17P01571 189 aa12.26□□□□□ -0.45
VPS29-204ENST00000548259 HERV-K104P61576 105 aa12.26□□□□□ -0.45
VPS29-204ENST00000548259 ZNF367Q7RTV3 350 aa12.26□□□□□ -0.45
VPS29-204ENST00000548259 TMEM17Q86X19 198 aa12.26□□□□□ -0.45
VPS29-204ENST00000548259 TMEM14BQ9NUH8 114 aa12.26□□□□□ -0.45
VPS29-204ENST00000548259 PLA2G2EQ9NZK7 142 aa12.26□□□□□ -0.45
VPS29-204ENST00000548259 A0A1W2PS18 150 aa12.25□□□□□ -0.45
VPS29-204ENST00000548259 NOTOA8MTQ0 251 aa12.25□□□□□ -0.45
VPS29-204ENST00000548259 EBAG9O00559 213 aa12.25□□□□□ -0.45
VPS29-204ENST00000548259 KRASP01116 189 aa12.25□□□□□ -0.45
VPS29-204ENST00000548259 F2RP25116 425 aa12.25□□□□□ -0.45
VPS29-204ENST00000548259 ZNF818PQ6ZRF7 136 aa12.25□□□□□ -0.45
VPS29-204ENST00000548259 HOGA1Q86XE5 327 aa12.25□□□□□ -0.45
VPS29-204ENST00000548259 UBE2DNLQ8IWF7 75 aa12.25□□□□□ -0.45
VPS29-204ENST00000548259 ZNF414Q96IQ9 312 aa12.25□□□□□ -0.45
VPS29-204ENST00000548259 VSIRQ9H7M9 311 aa12.25□□□□□ -0.45
VPS29-204ENST00000548259 MUC4Q99102 2169 aa12.25□□□□□ -0.45
VPS29-204ENST00000548259 NPBWR1P48145 328 aa12.24□□□□□ -0.45
VPS29-204ENST00000548259 C22orf42Q6IC83 251 aa12.24□□□□□ -0.45
VPS29-204ENST00000548259 TRPT1Q86TN4 253 aaKnown RBP12.24□□□□□ -0.45
VPS29-204ENST00000548259 CMTM1Q8IZ96 169 aa12.24□□□□□ -0.45
VPS29-204ENST00000548259 ST8SIA2Q92186 375 aa12.24□□□□□ -0.45
VPS29-204ENST00000548259 NARS2Q96I59 477 aaKnown RBP12.24□□□□□ -0.45
VPS29-204ENST00000548259 NDUFB11Q9NX14 153 aa12.24□□□□□ -0.45
VPS29-204ENST00000548259 FAT2Q9NYQ8 4349 aa12.23□□□□□ -0.45
VPS29-204ENST00000548259 MT-CO2P00403 227 aa12.23□□□□□ -0.45
VPS29-204ENST00000548259 TBCEQ15813 527 aaPredicted RBP12.23□□□□□ -0.45
VPS29-204ENST00000548259 TOMM20LQ6UXN7 152 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms