RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 TECTBQ96PL2 329 aa12.13□□□□□ -0.47
HOXC11-202ENST00000546378 TMEM242Q9NWH2 141 aa12.13□□□□□ -0.47
HOXC11-202ENST00000546378 DCAF16Q9NXF7 216 aa12.13□□□□□ -0.47
HOXC11-202ENST00000546378 TRGV5A0A0B4J1U4 118 aa12.13□□□□□ -0.47
HOXC11-202ENST00000546378 M0R1B8 84 aa12.13□□□□□ -0.47
HOXC11-202ENST00000546378 SMPD2O60906 423 aa12.13□□□□□ -0.47
HOXC11-202ENST00000546378 FXYD7P58549 80 aa12.13□□□□□ -0.47
HOXC11-202ENST00000546378 RPP30P78346 268 aaKnown RBP12.13□□□□□ -0.47
HOXC11-202ENST00000546378 RBM14Q96PK6 669 aaKnown RBP12.13□□□□□ -0.47
HOXC11-202ENST00000546378 MKRN2OSH3BPM6 223 aa12.12□□□□□ -0.47
HOXC11-202ENST00000546378 USF1P22415 310 aaPredicted RBP12.12□□□□□ -0.47
HOXC11-202ENST00000546378 SAXO1Q8IYX7 474 aa12.12□□□□□ -0.47
HOXC11-202ENST00000546378 AGMATQ9BSE5 352 aa12.12□□□□□ -0.47
HOXC11-202ENST00000546378 ASCL3Q9NQ33 180 aa12.12□□□□□ -0.47
HOXC11-202ENST00000546378 TCF19Q9Y242 345 aa12.12□□□□□ -0.47
HOXC11-202ENST00000546378 EXPH5Q8NEV8 1989 aa12.12□□□□□ -0.47
HOXC11-202ENST00000546378 GGCTO75223 188 aaKnown RBP12.12□□□□□ -0.47
HOXC11-202ENST00000546378 SRP14P37108 136 aaKnown RBP12.12□□□□□ -0.47
HOXC11-202ENST00000546378 ZNF134P52741 427 aa12.12□□□□□ -0.47
HOXC11-202ENST00000546378 ACSF3Q4G176 576 aaPredicted RBP12.12□□□□□ -0.47
HOXC11-202ENST00000546378 ZNF841Q6ZN19 808 aa12.12□□□□□ -0.47
HOXC11-202ENST00000546378 OR2T6Q8NHC8 308 aa12.12□□□□□ -0.47
HOXC11-202ENST00000546378 RNF138Q8WVD3 245 aa12.12□□□□□ -0.47
HOXC11-202ENST00000546378 H1FXQ92522 213 aaKnown RBP12.12□□□□□ -0.47
HOXC11-202ENST00000546378 WNT2P09544 360 aa12.12□□□□□ -0.47
HOXC11-202ENST00000546378 NPY1RP25929 384 aa12.12□□□□□ -0.47
HOXC11-202ENST00000546378 EFNB3Q15768 340 aa12.12□□□□□ -0.47
HOXC11-202ENST00000546378 ZNF766Q5HY98 468 aa12.12□□□□□ -0.47
HOXC11-202ENST00000546378 COLCA1Q6ZS62 124 aa12.12□□□□□ -0.47
HOXC11-202ENST00000546378 GGTLC1Q9BX51 225 aa12.12□□□□□ -0.47
HOXC11-202ENST00000546378 SH2D2AQ9NP31 389 aa12.12□□□□□ -0.47
HOXC11-202ENST00000546378 ZNF331Q9NQX6 463 aaPredicted RBP12.12□□□□□ -0.47
HOXC11-202ENST00000546378 LSM4Q9Y4Z0 139 aaKnown RBP12.12□□□□□ -0.47
HOXC11-202ENST00000546378 S4R3C0 116 aa12.12□□□□□ -0.47
HOXC11-202ENST00000546378 C20orf202A1L168 122 aa12.11□□□□□ -0.47
HOXC11-202ENST00000546378 OOEPA6NGQ2 149 aa12.11□□□□□ -0.47
HOXC11-202ENST00000546378 SP1P08047 785 aa12.11□□□□□ -0.47
HOXC11-202ENST00000546378 PRDX2P32119 198 aa12.11□□□□□ -0.47
HOXC11-202ENST00000546378 TP53TG3Q9ULZ0 132 aa12.11□□□□□ -0.47
HOXC11-202ENST00000546378 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP12.11□□□□□ -0.47
HOXC11-202ENST00000546378 PDE6DO43924 150 aa12.11□□□□□ -0.47
HOXC11-202ENST00000546378 HCP5Q6MZN7 132 aa12.11□□□□□ -0.47
HOXC11-202ENST00000546378 KLRC4-KLRK1H3BQV0 150 aa12.1□□□□□ -0.47
HOXC11-202ENST00000546378 M0R2Z0 102 aa12.1□□□□□ -0.47
HOXC11-202ENST00000546378 UBE2L3P68036 154 aaKnown RBP12.1□□□□□ -0.47
HOXC11-202ENST00000546378 IGHV1-2P23083 117 aa12.1□□□□□ -0.47
HOXC11-202ENST00000546378 RAB31Q13636 194 aa12.1□□□□□ -0.47
HOXC11-202ENST00000546378 MUC15Q8N387 334 aa12.1□□□□□ -0.47
HOXC11-202ENST00000546378 KLF13Q9Y2Y9 288 aaPredicted RBP12.1□□□□□ -0.47
HOXC11-202ENST00000546378 ARHGAP32A7KAX9 2087 aa12.1□□□□□ -0.47
HOXC11-202ENST00000546378 TM4SF5O14894 197 aa12.1□□□□□ -0.47
HOXC11-202ENST00000546378 BRS3P32247 399 aa12.1□□□□□ -0.47
HOXC11-202ENST00000546378 RPL15P61313 204 aaKnown RBP12.1□□□□□ -0.47
HOXC11-202ENST00000546378 CCL8P80075 99 aa12.1□□□□□ -0.47
HOXC11-202ENST00000546378 MORN5Q5VZ52 161 aa12.1□□□□□ -0.47
HOXC11-202ENST00000546378 TEPPQ6URK8 271 aa12.1□□□□□ -0.47
HOXC11-202ENST00000546378 CCL13Q99616 98 aa12.1□□□□□ -0.47
HOXC11-202ENST00000546378 GSX1Q9H4S2 264 aaPredicted RBP12.1□□□□□ -0.47
HOXC11-202ENST00000546378 SPRR3Q9UBC9 169 aa12.1□□□□□ -0.47
HOXC11-202ENST00000546378 CORTO00230 105 aa12.09□□□□□ -0.47
HOXC11-202ENST00000546378 CXorf1O96002 111 aa12.09□□□□□ -0.47
HOXC11-202ENST00000546378 MOSP00540 346 aa12.09□□□□□ -0.47
HOXC11-202ENST00000546378 RAB4AP20338 218 aa12.09□□□□□ -0.47
HOXC11-202ENST00000546378 NBL1P41271 181 aa12.09□□□□□ -0.47
HOXC11-202ENST00000546378 IBA57Q5T440 356 aaKnown RBP12.09□□□□□ -0.47
HOXC11-202ENST00000546378 CD177Q8N6Q3 437 aa12.09□□□□□ -0.47
HOXC11-202ENST00000546378 TAAR6Q96RI8 345 aa12.09□□□□□ -0.47
HOXC11-202ENST00000546378 GP6Q9HCN6 339 aa12.09□□□□□ -0.47
HOXC11-202ENST00000546378 TMSB15BA0A087X1C1 80 aa12.09□□□□□ -0.47
HOXC11-202ENST00000546378 IGKV1-16P04430 117 aa12.09□□□□□ -0.47
HOXC11-202ENST00000546378 TMEM11P17152 192 aa12.09□□□□□ -0.47
HOXC11-202ENST00000546378 SSX8Q7RTT4 187 aa12.09□□□□□ -0.47
HOXC11-202ENST00000546378 TCF24Q7RTU0 167 aa12.09□□□□□ -0.47
HOXC11-202ENST00000546378 OR5B3Q8NH48 314 aa12.09□□□□□ -0.47
HOXC11-202ENST00000546378 Q8TCH9 128 aa12.09□□□□□ -0.47
HOXC11-202ENST00000546378 FLYWCH2Q96CP2 140 aaKnown RBP12.09□□□□□ -0.47
HOXC11-202ENST00000546378 UQCRFS1P47985 274 aa12.08□□□□□ -0.47
HOXC11-202ENST00000546378 RHOBP62745 196 aa12.08□□□□□ -0.47
HOXC11-202ENST00000546378 NABP2Q9BQ15 211 aa12.08□□□□□ -0.47
HOXC11-202ENST00000546378 MIEN1Q9BRT3 115 aa12.08□□□□□ -0.47
HOXC11-202ENST00000546378 FAM90A10PA6NDY2 464 aa12.08□□□□□ -0.48
HOXC11-202ENST00000546378 FAM90A18PA6NE21 464 aa12.08□□□□□ -0.48
HOXC11-202ENST00000546378 FAM90A16PA6NEW6 464 aa12.08□□□□□ -0.48
HOXC11-202ENST00000546378 FAM90A20PA6NIJ5 464 aa12.08□□□□□ -0.48
HOXC11-202ENST00000546378 FAM90A8PA6NJQ4 464 aa12.08□□□□□ -0.48
HOXC11-202ENST00000546378 FAM90A7PA6NKC0 464 aa12.08□□□□□ -0.48
HOXC11-202ENST00000546378 FAM90A22PA8MWA6 464 aa12.08□□□□□ -0.48
HOXC11-202ENST00000546378 FAM90A12PA8MX19 464 aa12.08□□□□□ -0.48
HOXC11-202ENST00000546378 FAM90A5PA8MXJ8 464 aa12.08□□□□□ -0.48
HOXC11-202ENST00000546378 FAM90A23PA8MXZ1 464 aa12.08□□□□□ -0.48
HOXC11-202ENST00000546378 PROP1O75360 226 aa12.08□□□□□ -0.48
HOXC11-202ENST00000546378 FAM90A15PP0C7V4 464 aa12.08□□□□□ -0.48
HOXC11-202ENST00000546378 FAM90A13PP0C7W8 464 aa12.08□□□□□ -0.48
HOXC11-202ENST00000546378 FAM90A14PP0C7W9 464 aa12.08□□□□□ -0.48
HOXC11-202ENST00000546378 FAM90A24PP0C7X0 464 aa12.08□□□□□ -0.48
HOXC11-202ENST00000546378 TPTE2P1Q5T6R2 138 aa12.08□□□□□ -0.48
HOXC11-202ENST00000546378 C1orf229Q6ZS94 237 aaPredicted RBP12.08□□□□□ -0.48
HOXC11-202ENST00000546378 TMEM116Q8NCL8 245 aa12.08□□□□□ -0.48
HOXC11-202ENST00000546378 EAF1Q96JC9 268 aaPredicted RBP12.08□□□□□ -0.48
HOXC11-202ENST00000546378 VPS25Q9BRG1 176 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms