RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 C11orf94C9JXX5 98 aa12.95□□□□□ -0.34
CLSTN3-214ENST00000542663 AQP4P55087 323 aa12.95□□□□□ -0.34
CLSTN3-214ENST00000542663 ARPC4P59998 168 aa12.95□□□□□ -0.34
CLSTN3-214ENST00000542663 TBCEQ15813 527 aaPredicted RBP12.95□□□□□ -0.34
CLSTN3-214ENST00000542663 ZNF367Q7RTV3 350 aa12.95□□□□□ -0.34
CLSTN3-214ENST00000542663 OR1L8Q8NGR8 309 aa12.95□□□□□ -0.34
CLSTN3-214ENST00000542663 LSM10Q969L4 123 aaKnown RBP12.95□□□□□ -0.34
CLSTN3-214ENST00000542663 HRH4Q9H3N8 390 aa12.95□□□□□ -0.34
CLSTN3-214ENST00000542663 COMMD9Q9P000 198 aa12.95□□□□□ -0.34
CLSTN3-214ENST00000542663 IGHV3OR16-13A0A075B7E8 117 aa12.94□□□□□ -0.34
CLSTN3-214ENST00000542663 IGHV3-74A0A0B4J1X5 117 aa12.94□□□□□ -0.34
CLSTN3-214ENST00000542663 MARCH11A6NNE9 402 aa12.94□□□□□ -0.34
CLSTN3-214ENST00000542663 C15orf61A6NNL5 157 aa12.94□□□□□ -0.34
CLSTN3-214ENST00000542663 MRPS14O60783 128 aaKnown RBP12.94□□□□□ -0.34
CLSTN3-214ENST00000542663 RBMY1A1P0DJD3 496 aaKnown RBP12.94□□□□□ -0.34
CLSTN3-214ENST00000542663 RBMY1CP0DJD4 496 aa12.94□□□□□ -0.34
CLSTN3-214ENST00000542663 FXYD4P59646 89 aa12.94□□□□□ -0.34
CLSTN3-214ENST00000542663 RBMY1FQ15415 496 aaKnown RBP12.94□□□□□ -0.34
CLSTN3-214ENST00000542663 HINT2Q9BX68 163 aa12.94□□□□□ -0.34
CLSTN3-214ENST00000542663 NOTOA8MTQ0 251 aa12.93□□□□□ -0.34
CLSTN3-214ENST00000542663 SCGNO76038 276 aa12.93□□□□□ -0.34
CLSTN3-214ENST00000542663 AADACL3Q5VUY0 350 aa12.93□□□□□ -0.34
CLSTN3-214ENST00000542663 LEMD1Q68G75 181 aa12.93□□□□□ -0.34
CLSTN3-214ENST00000542663 HOGA1Q86XE5 327 aa12.93□□□□□ -0.34
CLSTN3-214ENST00000542663 LGALS14Q8TCE9 139 aa12.93□□□□□ -0.34
CLSTN3-214ENST00000542663 DGCR14Q96DF8 476 aaKnown RBP12.93□□□□□ -0.34
CLSTN3-214ENST00000542663 NSG2Q9Y328 171 aa12.93□□□□□ -0.34
CLSTN3-214ENST00000542663 IGHV4-4A0A075B6R2 117 aa12.92□□□□□ -0.34
CLSTN3-214ENST00000542663 TRAV14DV4A0A0A6YYC5 116 aa12.92□□□□□ -0.34
CLSTN3-214ENST00000542663 NUPL2O15504 423 aaKnown RBP12.92□□□□□ -0.34
CLSTN3-214ENST00000542663 GIG44P09565 113 aaPredicted RBP12.92□□□□□ -0.34
CLSTN3-214ENST00000542663 HLA-DMBP28068 263 aa12.92□□□□□ -0.34
CLSTN3-214ENST00000542663 RELQ04864 619 aaPredicted RBP12.92□□□□□ -0.34
CLSTN3-214ENST00000542663 Q6ZTC4 211 aa12.92□□□□□ -0.34
CLSTN3-214ENST00000542663 TCF24Q7RTU0 167 aa12.92□□□□□ -0.34
CLSTN3-214ENST00000542663 TMEM17Q86X19 198 aa12.92□□□□□ -0.34
CLSTN3-214ENST00000542663 FAM24BQ8N5W8 94 aa12.92□□□□□ -0.34
CLSTN3-214ENST00000542663 DAPK2Q9UIK4 370 aa12.92□□□□□ -0.34
CLSTN3-214ENST00000542663 OR51B2Q9Y5P1 312 aa12.92□□□□□ -0.34
CLSTN3-214ENST00000542663 IGHV4-28A0A0C4DH34 117 aa12.91□□□□□ -0.34
CLSTN3-214ENST00000542663 DBX1A6NMT0 343 aa12.91□□□□□ -0.34
CLSTN3-214ENST00000542663 I3L2K1 104 aa12.91□□□□□ -0.34
CLSTN3-214ENST00000542663 RTL8CO15255 209 aa12.91□□□□□ -0.34
CLSTN3-214ENST00000542663 YIF1AO95070 293 aa12.91□□□□□ -0.34
CLSTN3-214ENST00000542663 FCER2P06734 321 aa12.91□□□□□ -0.34
CLSTN3-214ENST00000542663 GNRHRP30968 328 aa12.91□□□□□ -0.34
CLSTN3-214ENST00000542663 DEFB131AP59861 70 aa12.91□□□□□ -0.34
CLSTN3-214ENST00000542663 LILRB2Q8N423 598 aa12.91□□□□□ -0.34
CLSTN3-214ENST00000542663 NRG4Q8WWG1 115 aa12.91□□□□□ -0.34
CLSTN3-214ENST00000542663 GIMAP1Q8WWP7 306 aa12.91□□□□□ -0.34
CLSTN3-214ENST00000542663 CMTM3Q96MX0 182 aa12.91□□□□□ -0.34
CLSTN3-214ENST00000542663 NXF2Q9GZY0 626 aaKnown RBP12.91□□□□□ -0.34
CLSTN3-214ENST00000542663 RHBDL2Q9NX52 303 aa12.91□□□□□ -0.34
CLSTN3-214ENST00000542663 APOHP02749 345 aaPredicted RBP12.9□□□□□ -0.34
CLSTN3-214ENST00000542663 ERVK-16P61578 105 aa12.9□□□□□ -0.34
CLSTN3-214ENST00000542663 OR1P1Q8NH06 330 aa12.9□□□□□ -0.34
CLSTN3-214ENST00000542663 FCAMRQ8WWV6 532 aa12.9□□□□□ -0.34
CLSTN3-214ENST00000542663 ST8SIA2Q92186 375 aa12.9□□□□□ -0.34
CLSTN3-214ENST00000542663 SLC25A38Q96DW6 304 aa12.9□□□□□ -0.34
CLSTN3-214ENST00000542663 KRTAP4-5Q9BYR2 181 aa12.9□□□□□ -0.34
CLSTN3-214ENST00000542663 MS4A6AQ9H2W1 248 aa12.9□□□□□ -0.34
CLSTN3-214ENST00000542663 VSIRQ9H7M9 311 aa12.9□□□□□ -0.34
CLSTN3-214ENST00000542663 TXNL4BQ9NX01 149 aaKnown RBP12.9□□□□□ -0.34
CLSTN3-214ENST00000542663 TRAV18A0A075B6X5 111 aa12.89□□□□□ -0.35
CLSTN3-214ENST00000542663 ELOA3CA0A087WX78 387 aaPredicted RBP12.89□□□□□ -0.35
CLSTN3-214ENST00000542663 TRAV10A0A0B4J240 114 aa12.89□□□□□ -0.35
CLSTN3-214ENST00000542663 PRSS29PA6NIE9 313 aa12.89□□□□□ -0.35
CLSTN3-214ENST00000542663 KRASP01116 189 aa12.89□□□□□ -0.35
CLSTN3-214ENST00000542663 RLN1P04808 185 aa12.89□□□□□ -0.35
CLSTN3-214ENST00000542663 F2RP25116 425 aa12.89□□□□□ -0.35
CLSTN3-214ENST00000542663 FGF9P31371 208 aaPredicted RBP12.89□□□□□ -0.35
CLSTN3-214ENST00000542663 G6PCP35575 357 aa12.89□□□□□ -0.35
CLSTN3-214ENST00000542663 PAFAH1B2P68402 229 aa12.89□□□□□ -0.35
CLSTN3-214ENST00000542663 SFXN4Q6P4A7 337 aa12.89□□□□□ -0.35
CLSTN3-214ENST00000542663 CADM3Q8N126 398 aa12.89□□□□□ -0.35
CLSTN3-214ENST00000542663 OR5H6Q8NGV6 325 aa12.89□□□□□ -0.35
CLSTN3-214ENST00000542663 SLC25A46Q96AG3 418 aa12.89□□□□□ -0.35
CLSTN3-214ENST00000542663 TXN2Q99757 166 aa12.89□□□□□ -0.35
CLSTN3-214ENST00000542663 RRP15Q9Y3B9 282 aaKnown RBP12.89□□□□□ -0.35
CLSTN3-214ENST00000542663 X6R8D5 127 aa12.89□□□□□ -0.35
CLSTN3-214ENST00000542663 ZNF705EA8MWA4 302 aaPredicted RBP12.88□□□□□ -0.35
CLSTN3-214ENST00000542663 DFFBO76075 338 aa12.88□□□□□ -0.35
CLSTN3-214ENST00000542663 IGHV3-48P01763 117 aa12.88□□□□□ -0.35
CLSTN3-214ENST00000542663 LPAR6P43657 344 aa12.88□□□□□ -0.35
CLSTN3-214ENST00000542663 MFAP4P55083 255 aa12.88□□□□□ -0.35
CLSTN3-214ENST00000542663 PVRIGQ6DKI7 326 aa12.88□□□□□ -0.35
CLSTN3-214ENST00000542663 OR5AP2Q8NGF4 316 aa12.88□□□□□ -0.35
CLSTN3-214ENST00000542663 MISP3Q96FF7 219 aa12.88□□□□□ -0.35
CLSTN3-214ENST00000542663 TMEM56Q96MV1 263 aa12.88□□□□□ -0.35
CLSTN3-214ENST00000542663 RNF126Q9BV68 326 aa12.88□□□□□ -0.35
CLSTN3-214ENST00000542663 TMEM14BQ9NUH8 114 aa12.88□□□□□ -0.35
CLSTN3-214ENST00000542663 ST8SIA3O43173 380 aa12.87□□□□□ -0.35
CLSTN3-214ENST00000542663 PGLYRP1O75594 196 aaPredicted RBP12.87□□□□□ -0.35
CLSTN3-214ENST00000542663 SNAPC5O75971 98 aa12.87□□□□□ -0.35
CLSTN3-214ENST00000542663 CD5P06127 495 aa12.87□□□□□ -0.35
CLSTN3-214ENST00000542663 MIFP14174 115 aa12.87□□□□□ -0.35
CLSTN3-214ENST00000542663 C4BPBP20851 252 aa12.87□□□□□ -0.35
CLSTN3-214ENST00000542663 TOMM20LQ6UXN7 152 aa12.87□□□□□ -0.35
CLSTN3-214ENST00000542663 TRPT1Q86TN4 253 aaKnown RBP12.87□□□□□ -0.35
CLSTN3-214ENST00000542663 TPRA1Q86W33 373 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms