RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 TMEM14BQ9NUH8 114 aa8.83□□□□□ -1
CLIP1-213ENST00000540338 ZNRD1Q9P1U0 126 aa8.83□□□□□ -1
CLIP1-213ENST00000540338 KMT2EQ8IZD2 1858 aa8.82□□□□□ -1
CLIP1-213ENST00000540338 CA7P43166 264 aa8.82□□□□□ -1
CLIP1-213ENST00000540338 GPR6P46095 362 aaPredicted RBP8.82□□□□□ -1
CLIP1-213ENST00000540338 TDGF1P3P51864 188 aa8.82□□□□□ -1
CLIP1-213ENST00000540338 EFNB3Q15768 340 aa8.82□□□□□ -1
CLIP1-213ENST00000540338 CENPVQ7Z7K6 275 aaPredicted RBP8.82□□□□□ -1
CLIP1-213ENST00000540338 PNKDQ8N490 385 aa8.82□□□□□ -1
CLIP1-213ENST00000540338 OR51G1Q8NGK1 321 aa8.82□□□□□ -1
CLIP1-213ENST00000540338 PERPQ96FX8 193 aa8.82□□□□□ -1
CLIP1-213ENST00000540338 PITPNC1Q9UKF7 332 aa8.82□□□□□ -1
CLIP1-213ENST00000540338 CORTO00230 105 aa8.82□□□□□ -1
CLIP1-213ENST00000540338 REG1AP05451 166 aa8.82□□□□□ -1
CLIP1-213ENST00000540338 STAG3L2P0CL84 134 aa8.82□□□□□ -1
CLIP1-213ENST00000540338 STAG3L3P0CL85 134 aa8.82□□□□□ -1
CLIP1-213ENST00000540338 HTR1DP28221 377 aa8.82□□□□□ -1
CLIP1-213ENST00000540338 GPX4P36969 197 aaPredicted RBP8.82□□□□□ -1
CLIP1-213ENST00000540338 BAGE3Q86Y29 109 aa8.82□□□□□ -1
CLIP1-213ENST00000540338 BAGE2Q86Y30 109 aa8.82□□□□□ -1
CLIP1-213ENST00000540338 ZCCHC14Q8WYQ9 949 aaKnown RBP8.82□□□□□ -1
CLIP1-213ENST00000540338 PAXXQ9BUH6 204 aa8.82□□□□□ -1
CLIP1-213ENST00000540338 ZNF331Q9NQX6 463 aaPredicted RBP8.82□□□□□ -1
CLIP1-213ENST00000540338 LAMA1P25391 3075 aa8.82□□□□□ -1
CLIP1-213ENST00000540338 H0YJW9 148 aa8.82□□□□□ -1
CLIP1-213ENST00000540338 IGHV3-48P01763 117 aa8.82□□□□□ -1
CLIP1-213ENST00000540338 THBDP07204 575 aa8.82□□□□□ -1
CLIP1-213ENST00000540338 IGHV1-8P0DP01 117 aa8.82□□□□□ -1
CLIP1-213ENST00000540338 CD69Q07108 199 aa8.82□□□□□ -1
CLIP1-213ENST00000540338 C2orf83Q53S99 150 aa8.82□□□□□ -1
CLIP1-213ENST00000540338 ZNF295-AS1Q8N0V1 137 aa8.82□□□□□ -1
CLIP1-213ENST00000540338 OR5AU1Q8NGC0 362 aa8.82□□□□□ -1
CLIP1-213ENST00000540338 OR10W1Q8NGF6 305 aa8.82□□□□□ -1
CLIP1-213ENST00000540338 BLNKQ8WV28 456 aa8.82□□□□□ -1
CLIP1-213ENST00000540338 TMEM18Q96B42 140 aa8.82□□□□□ -1
CLIP1-213ENST00000540338 SAMD10Q9BYL1 202 aa8.82□□□□□ -1
CLIP1-213ENST00000540338 ZNF835Q9Y2P0 537 aa8.82□□□□□ -1
CLIP1-213ENST00000540338 YLPM1P49750 1951 aaKnown RBP8.82□□□□□ -1
CLIP1-213ENST00000540338 IGHV3-21A0A0B4J1V1 117 aa8.81□□□□□ -1
CLIP1-213ENST00000540338 C1QTNF9BB2RNN3 333 aa8.81□□□□□ -1
CLIP1-213ENST00000540338 SLC25A5P05141 298 aaKnown RBP8.81□□□□□ -1
CLIP1-213ENST00000540338 GATA2P23769 480 aaPredicted RBP8.81□□□□□ -1
CLIP1-213ENST00000540338 RNASEH2CQ8TDP1 164 aaKnown RBP8.81□□□□□ -1
CLIP1-213ENST00000540338 TMEM68Q96MH6 324 aa8.81□□□□□ -1
CLIP1-213ENST00000540338 SRD5A3Q9H8P0 318 aa8.81□□□□□ -1
CLIP1-213ENST00000540338 TNFRSF19Q9NS68 423 aa8.81□□□□□ -1
CLIP1-213ENST00000540338 HILPDAQ9Y5L2 63 aa8.81□□□□□ -1
CLIP1-213ENST00000540338 TSTD3H0UI37 97 aa8.81□□□□□ -1
CLIP1-213ENST00000540338 P0C879 139 aa8.81□□□□□ -1
CLIP1-213ENST00000540338 TRGC1P0CF51 173 aa8.81□□□□□ -1
CLIP1-213ENST00000540338 RPEL1Q2QD12 228 aa8.81□□□□□ -1
CLIP1-213ENST00000540338 MIR17HGQ75NE6 70 aa8.81□□□□□ -1
CLIP1-213ENST00000540338 SSX7Q7RTT5 188 aa8.81□□□□□ -1
CLIP1-213ENST00000540338 CHRDL1Q9BU40 450 aa8.81□□□□□ -1
CLIP1-213ENST00000540338 MRPL32Q9BYC8 188 aaKnown RBP8.81□□□□□ -1
CLIP1-213ENST00000540338 UBTD1Q9HAC8 227 aa8.81□□□□□ -1
CLIP1-213ENST00000540338 ZNF355PQ9NSJ1 428 aa8.81□□□□□ -1
CLIP1-213ENST00000540338 SPTBN5Q9NRC6 3674 aaKnown RBP8.81□□□□□ -1
CLIP1-213ENST00000540338 S100A7P31151 101 aa8.81□□□□□ -1
CLIP1-213ENST00000540338 TNFRSF14Q92956 283 aa8.81□□□□□ -1
CLIP1-213ENST00000540338 CXCL1P09341 107 aa8.81□□□□□ -1
CLIP1-213ENST00000540338 CDX1P47902 265 aaPredicted RBP8.81□□□□□ -1
CLIP1-213ENST00000540338 BRWD1-AS2P59051 145 aa8.81□□□□□ -1
CLIP1-213ENST00000540338 LYZP61626 148 aa8.81□□□□□ -1
CLIP1-213ENST00000540338 PRR27Q6MZM9 219 aa8.81□□□□□ -1
CLIP1-213ENST00000540338 Q8NA96 180 aa8.81□□□□□ -1
CLIP1-213ENST00000540338 TMEM167AQ8TBQ9 72 aa8.81□□□□□ -1
CLIP1-213ENST00000540338 LOC105371242A0A075B767 164 aa8.8□□□□□ -1
CLIP1-213ENST00000540338 CRYBB3P26998 211 aa8.8□□□□□ -1
CLIP1-213ENST00000540338 COMPP49747 757 aaPredicted RBP8.8□□□□□ -1
CLIP1-213ENST00000540338 ZNF672Q499Z4 452 aaPredicted RBP8.8□□□□□ -1
CLIP1-213ENST00000540338 TMEM177Q53S58 311 aa8.8□□□□□ -1
CLIP1-213ENST00000540338 C22orf34Q6ZV56 151 aa8.8□□□□□ -1
CLIP1-213ENST00000540338 C1QL4Q86Z23 238 aa8.8□□□□□ -1
CLIP1-213ENST00000540338 FAM122AQ96E09 287 aa8.8□□□□□ -1
CLIP1-213ENST00000540338 SCO2A0A1W2PP80 73 aa8.8□□□□□ -1
CLIP1-213ENST00000540338 ZNF705FA8MVS1 300 aaPredicted RBP8.8□□□□□ -1
CLIP1-213ENST00000540338 HYPMO75409 117 aa8.8□□□□□ -1
CLIP1-213ENST00000540338 ZNF705DP0CH99 300 aaPredicted RBP8.8□□□□□ -1
CLIP1-213ENST00000540338 ZNF705BP0CI00 300 aaPredicted RBP8.8□□□□□ -1
CLIP1-213ENST00000540338 POU2AF1Q16633 256 aa8.8□□□□□ -1
CLIP1-213ENST00000540338 ST6GALNAC3Q8NDV1 305 aa8.8□□□□□ -1
CLIP1-213ENST00000540338 NEU4Q8WWR8 484 aaPredicted RBP8.8□□□□□ -1
CLIP1-213ENST00000540338 C5orf52A6NGY3 159 aa8.8□□□□□ -1
CLIP1-213ENST00000540338 K7EQM0 130 aa8.8□□□□□ -1
CLIP1-213ENST00000540338 PROP1O75360 226 aa8.8□□□□□ -1
CLIP1-213ENST00000540338 EIF4EBP1Q13541 118 aaPredicted RBP8.8□□□□□ -1
CLIP1-213ENST00000540338 VWC2Q2TAL6 325 aa8.8□□□□□ -1
CLIP1-213ENST00000540338 CCDC144NLQ6NUI1 221 aa8.8□□□□□ -1
CLIP1-213ENST00000540338 FAM71F2Q6NXP2 309 aa8.8□□□□□ -1
CLIP1-213ENST00000540338 ZNF833PQ6ZTB9 187 aa8.8□□□□□ -1
CLIP1-213ENST00000540338 OR2T6Q8NHC8 308 aa8.8□□□□□ -1
CLIP1-213ENST00000540338 SFRP2Q96HF1 295 aa8.8□□□□□ -1
CLIP1-213ENST00000540338 RASL11BQ9BPW5 248 aa8.8□□□□□ -1
CLIP1-213ENST00000540338 A0A1B0GWJ7 208 aa8.79□□□□□ -1
CLIP1-213ENST00000540338 PLAUP00749 431 aa8.79□□□□□ -1
CLIP1-213ENST00000540338 ARSJQ5FYB0 599 aaPredicted RBP8.79□□□□□ -1
CLIP1-213ENST00000540338 COL25A1Q9BXS0 654 aaPredicted RBP8.79□□□□□ -1
CLIP1-213ENST00000540338 PMS2P5A8MQ11 134 aa8.79□□□□□ -1
CLIP1-213ENST00000540338 FNDC10F2Z333 226 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms