RNA–Protein interactions for RNA: ENST00000539417.6

RPAIN-206, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-206ENST00000539417 KCNIP3Q9Y2W7 256 aa12.1□□□□□ -0.47
RPAIN-206ENST00000539417 PRKDCP78527 4128 aaKnown RBP12.1□□□□□ -0.47
RPAIN-206ENST00000539417 IGHV3-21A0A0B4J1V1 117 aa12.09□□□□□ -0.47
RPAIN-206ENST00000539417 LYRM1O43325 122 aa12.09□□□□□ -0.47
RPAIN-206ENST00000539417 NXPH3O95157 252 aa12.09□□□□□ -0.47
RPAIN-206ENST00000539417 OR8U8P0C7N1 319 aa12.09□□□□□ -0.47
RPAIN-206ENST00000539417 DEFA4P12838 97 aa12.09□□□□□ -0.47
RPAIN-206ENST00000539417 MECP2P51608 486 aaKnown RBP12.09□□□□□ -0.47
RPAIN-206ENST00000539417 DEFA6Q01524 100 aa12.09□□□□□ -0.47
RPAIN-206ENST00000539417 TMEM128Q5BJH2 165 aa12.09□□□□□ -0.47
RPAIN-206ENST00000539417 KPRPQ5T749 579 aaPredicted RBP12.09□□□□□ -0.47
RPAIN-206ENST00000539417 ZNF429Q86V71 674 aa12.09□□□□□ -0.47
RPAIN-206ENST00000539417 CENPSQ8N2Z9 138 aa12.09□□□□□ -0.47
RPAIN-206ENST00000539417 RNASE11Q8TAA1 199 aaKnown RBP12.09□□□□□ -0.47
RPAIN-206ENST00000539417 RCC1LQ96I51 464 aaKnown RBP12.09□□□□□ -0.47
RPAIN-206ENST00000539417 CCDC140Q96MF4 163 aa12.09□□□□□ -0.47
RPAIN-206ENST00000539417 CCDC32Q9BV29 185 aa12.09□□□□□ -0.47
RPAIN-206ENST00000539417 PEF1Q9UBV8 284 aaKnown RBP12.09□□□□□ -0.47
RPAIN-206ENST00000539417 CACNG5Q9UF02 275 aa12.09□□□□□ -0.47
RPAIN-206ENST00000539417 PPP5D1E7EU14 171 aa12.08□□□□□ -0.47
RPAIN-206ENST00000539417 SFT2D2O95562 160 aa12.08□□□□□ -0.47
RPAIN-206ENST00000539417 ANXA7P20073 488 aaKnown RBP12.08□□□□□ -0.47
RPAIN-206ENST00000539417 VAMP1P23763 118 aa12.08□□□□□ -0.47
RPAIN-206ENST00000539417 KRTAP10-11P60412 298 aa12.08□□□□□ -0.47
RPAIN-206ENST00000539417 NMSQ5H8A3 153 aa12.08□□□□□ -0.47
RPAIN-206ENST00000539417 THOC7Q6I9Y2 204 aaKnown RBP12.08□□□□□ -0.47
RPAIN-206ENST00000539417 OR2C3Q8N628 320 aa12.08□□□□□ -0.47
RPAIN-206ENST00000539417 C7orf50Q9BRJ6 194 aaKnown RBP12.08□□□□□ -0.47
RPAIN-206ENST00000539417 F11RQ9Y624 299 aaKnown RBP12.08□□□□□ -0.47
RPAIN-206ENST00000539417 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.08□□□□□ -0.48
RPAIN-206ENST00000539417 A0A1B0GVG6 124 aa12.08□□□□□ -0.48
RPAIN-206ENST00000539417 BMPR1BO00238 502 aa12.08□□□□□ -0.48
RPAIN-206ENST00000539417 ATG12O94817 140 aa12.08□□□□□ -0.48
RPAIN-206ENST00000539417 HLA-AP01891 365 aaKnown RBP12.08□□□□□ -0.48
RPAIN-206ENST00000539417 SLC25A24Q6NUK1 477 aa12.08□□□□□ -0.48
RPAIN-206ENST00000539417 IL22RA2Q969J5 263 aa12.08□□□□□ -0.48
RPAIN-206ENST00000539417 RANGRFQ9HD47 186 aaPredicted RBP12.08□□□□□ -0.48
RPAIN-206ENST00000539417 CENPXA8MT69 81 aa12.07□□□□□ -0.48
RPAIN-206ENST00000539417 OVOL1O14753 267 aa12.07□□□□□ -0.48
RPAIN-206ENST00000539417 IFNA17P01571 189 aa12.07□□□□□ -0.48
RPAIN-206ENST00000539417 AARDQ4LEZ3 155 aa12.07□□□□□ -0.48
RPAIN-206ENST00000539417 FAM219AQ8IW50 185 aa12.07□□□□□ -0.48
RPAIN-206ENST00000539417 LGI3Q8N145 548 aa12.07□□□□□ -0.48
RPAIN-206ENST00000539417 ZC4H2Q9NQZ6 224 aa12.07□□□□□ -0.48
RPAIN-206ENST00000539417 A0A0B4J2A0 478 aa12.06□□□□□ -0.48
RPAIN-206ENST00000539417 C9orf170A2RU37 121 aa12.06□□□□□ -0.48
RPAIN-206ENST00000539417 SEC14L6B5MCN3 397 aa12.06□□□□□ -0.48
RPAIN-206ENST00000539417 DHFRP00374 187 aa12.06□□□□□ -0.48
RPAIN-206ENST00000539417 HIST1H1BP16401 226 aaKnown RBP12.06□□□□□ -0.48
RPAIN-206ENST00000539417 KLF5Q13887 457 aaPredicted RBP12.06□□□□□ -0.48
RPAIN-206ENST00000539417 RGS21Q2M5E4 152 aa12.06□□□□□ -0.48
RPAIN-206ENST00000539417 CLEC19AQ6UXS0 136 aa12.06□□□□□ -0.48
RPAIN-206ENST00000539417 Q6ZNX1 250 aa12.06□□□□□ -0.48
RPAIN-206ENST00000539417 HSD17B13Q7Z5P4 300 aaPredicted RBP12.06□□□□□ -0.48
RPAIN-206ENST00000539417 OR52B4Q8NGK2 314 aa12.06□□□□□ -0.48
RPAIN-206ENST00000539417 PLEKHA3Q9HB20 300 aa12.06□□□□□ -0.48
RPAIN-206ENST00000539417 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.06□□□□□ -0.48
RPAIN-206ENST00000539417 SHPKQ9UHJ6 478 aa12.06□□□□□ -0.48
RPAIN-206ENST00000539417 K7EIM0 57 aa12.05□□□□□ -0.48
RPAIN-206ENST00000539417 UPK1BO75841 260 aa12.05□□□□□ -0.48
RPAIN-206ENST00000539417 IGHV3-48P01763 117 aa12.05□□□□□ -0.48
RPAIN-206ENST00000539417 TCRBP04435 133 aa12.05□□□□□ -0.48
RPAIN-206ENST00000539417 OR4E1P0C645 316 aa12.05□□□□□ -0.48
RPAIN-206ENST00000539417 ANXA3P12429 323 aa12.05□□□□□ -0.48
RPAIN-206ENST00000539417 EDN2P20800 178 aa12.05□□□□□ -0.48
RPAIN-206ENST00000539417 SYNJ2BPP57105 145 aa12.05□□□□□ -0.48
RPAIN-206ENST00000539417 HAPLN4Q86UW8 402 aa12.05□□□□□ -0.48
RPAIN-206ENST00000539417 LRTM2Q8N967 370 aa12.05□□□□□ -0.48
RPAIN-206ENST00000539417 ZNF502Q8TBZ5 544 aa12.05□□□□□ -0.48
RPAIN-206ENST00000539417 C20orf85Q9H1P6 137 aa12.05□□□□□ -0.48
RPAIN-206ENST00000539417 TRAV6A0A075B6T7 132 aa12.04□□□□□ -0.48
RPAIN-206ENST00000539417 F8W735 103 aaPredicted RBP12.04□□□□□ -0.48
RPAIN-206ENST00000539417 UBE2MP61081 183 aaKnown RBP12.04□□□□□ -0.48
RPAIN-206ENST00000539417 DHRS2Q13268 280 aa12.04□□□□□ -0.48
RPAIN-206ENST00000539417 IL34Q6ZMJ4 242 aa12.04□□□□□ -0.48
RPAIN-206ENST00000539417 ZNF114Q8NC26 417 aa12.04□□□□□ -0.48
RPAIN-206ENST00000539417 OR1P1Q8NH06 330 aa12.04□□□□□ -0.48
RPAIN-206ENST00000539417 SCARB1Q8WTV0 552 aa12.04□□□□□ -0.48
RPAIN-206ENST00000539417 EEF1AKMT3Q96AZ1 226 aa12.04□□□□□ -0.48
RPAIN-206ENST00000539417 ADAP1O75689 374 aa12.03□□□□□ -0.48
RPAIN-206ENST00000539417 OR2C1O95371 312 aa12.03□□□□□ -0.48
RPAIN-206ENST00000539417 DUS4LO95620 317 aaKnown RBP12.03□□□□□ -0.48
RPAIN-206ENST00000539417 CLEC3BP05452 202 aa12.03□□□□□ -0.48
RPAIN-206ENST00000539417 HOXB5P09067 269 aa12.03□□□□□ -0.48
RPAIN-206ENST00000539417 SULT1A3P0DMM9 295 aa12.03□□□□□ -0.48
RPAIN-206ENST00000539417 SULT1A4P0DMN0 295 aa12.03□□□□□ -0.48
RPAIN-206ENST00000539417 RNASE2P10153 161 aaKnown RBP12.03□□□□□ -0.48
RPAIN-206ENST00000539417 SPCS3P61009 180 aa12.03□□□□□ -0.48
RPAIN-206ENST00000539417 ASAH1Q13510 395 aa12.03□□□□□ -0.48
RPAIN-206ENST00000539417 ACSM6Q6P461 480 aa12.03□□□□□ -0.48
RPAIN-206ENST00000539417 MISP3Q96FF7 219 aa12.03□□□□□ -0.48
RPAIN-206ENST00000539417 ZNF414Q96IQ9 312 aa12.03□□□□□ -0.48
RPAIN-206ENST00000539417 PDCD10Q9BUL8 212 aa12.03□□□□□ -0.48
RPAIN-206ENST00000539417 AURKAIP1Q9NWT8 199 aaPredicted RBP12.03□□□□□ -0.48
RPAIN-206ENST00000539417 IGHV3-35A0A0C4DH35 117 aa12.02□□□□□ -0.48
RPAIN-206ENST00000539417 MPTX1A8MV57 137 aa12.02□□□□□ -0.48
RPAIN-206ENST00000539417 INS-IGF2F8WCM5 200 aa12.02□□□□□ -0.48
RPAIN-206ENST00000539417 I3L2K1 104 aa12.02□□□□□ -0.48
RPAIN-206ENST00000539417 WIPF1O43516 503 aa12.02□□□□□ -0.48
RPAIN-206ENST00000539417 PITX3O75364 302 aa12.02□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms