RNA–Protein interactions for RNA: ENST00000536079.5

DDX55-204, Transcript of DEAD-box helicase 55, human

TSL 2

Gene DDX55, Length 765 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-204	ENST00000536079	ATG12	O94817	140 aa		13.74	□□□□□ -0.21
DDX55-204	ENST00000536079	SFT2D2	O95562	160 aa		13.74	□□□□□ -0.21
DDX55-204	ENST00000536079	OR8U8	P0C7N1	319 aa		13.74	□□□□□ -0.21
DDX55-204	ENST00000536079	DEFA4	P12838	97 aa		13.74	□□□□□ -0.21
DDX55-204	ENST00000536079	ANXA7	P20073	488 aa	Known RBP	13.74	□□□□□ -0.21
DDX55-204	ENST00000536079	VAMP1	P23763	118 aa		13.74	□□□□□ -0.21
DDX55-204	ENST00000536079	RNASE11	Q8TAA1	199 aa	Known RBP	13.74	□□□□□ -0.21
DDX55-204	ENST00000536079	DPF1	Q92782	380 aa		13.74	□□□□□ -0.21
DDX55-204	ENST00000536079	IL22RA2	Q969J5	263 aa		13.74	□□□□□ -0.21
DDX55-204	ENST00000536079	CACNG5	Q9UF02	275 aa		13.74	□□□□□ -0.21
DDX55-204	ENST00000536079	CENPX	A8MT69	81 aa		13.73	□□□□□ -0.21
DDX55-204	ENST00000536079	NXPH3	O95157	252 aa		13.73	□□□□□ -0.21
DDX55-204	ENST00000536079	PRB2	P02812	416 aa	Predicted RBP	13.73	□□□□□ -0.21
DDX55-204	ENST00000536079	HOXD3	P31249	432 aa	Predicted RBP	13.73	□□□□□ -0.21
DDX55-204	ENST00000536079	MECP2	P51608	486 aa	Known RBP	13.73	□□□□□ -0.21
DDX55-204	ENST00000536079	ZNF846	Q147U1	533 aa		13.73	□□□□□ -0.21
DDX55-204	ENST00000536079	AARD	Q4LEZ3	155 aa		13.73	□□□□□ -0.21
DDX55-204	ENST00000536079	NMS	Q5H8A3	153 aa		13.73	□□□□□ -0.21
DDX55-204	ENST00000536079	KPRP	Q5T749	579 aa	Predicted RBP	13.73	□□□□□ -0.21
DDX55-204	ENST00000536079	THOC7	Q6I9Y2	204 aa	Known RBP	13.73	□□□□□ -0.21
DDX55-204	ENST00000536079	OR2C3	Q8N628	320 aa		13.73	□□□□□ -0.21
DDX55-204	ENST00000536079	RCC1L	Q96I51	464 aa	Known RBP	13.73	□□□□□ -0.21
DDX55-204	ENST00000536079	CCDC140	Q96MF4	163 aa		13.73	□□□□□ -0.21
DDX55-204	ENST00000536079	PEF1	Q9UBV8	284 aa	Known RBP	13.73	□□□□□ -0.21
DDX55-204	ENST00000536079	F11R	Q9Y624	299 aa	Known RBP	13.73	□□□□□ -0.21
DDX55-204	ENST00000536079	RBM14-RBM4	A0A0A0MSL8	147 aa	Known RBP	13.72	□□□□□ -0.21
DDX55-204	ENST00000536079	IGHV3-21	A0A0B4J1V1	117 aa		13.72	□□□□□ -0.21
DDX55-204	ENST00000536079	PPP5D1	E7EU14	171 aa		13.72	□□□□□ -0.21
DDX55-204	ENST00000536079	BMPR1B	O00238	502 aa		13.72	□□□□□ -0.21
DDX55-204	ENST00000536079	KRTAP10-11	P60412	298 aa		13.72	□□□□□ -0.21
DDX55-204	ENST00000536079	SLC25A24	Q6NUK1	477 aa		13.72	□□□□□ -0.21
DDX55-204	ENST00000536079	FAM219A	Q8IW50	185 aa		13.72	□□□□□ -0.21
DDX55-204	ENST00000536079	LGI3	Q8N145	548 aa		13.72	□□□□□ -0.21
DDX55-204	ENST00000536079	WDR12	Q9GZL7	423 aa	Known RBP	13.72	□□□□□ -0.21
DDX55-204	ENST00000536079	RANGRF	Q9HD47	186 aa	Predicted RBP	13.72	□□□□□ -0.21
DDX55-204	ENST00000536079		A0A0B4J2A0	478 aa		13.71	□□□□□ -0.21
DDX55-204	ENST00000536079	C9orf170	A2RU37	121 aa		13.71	□□□□□ -0.21
DDX55-204	ENST00000536079	UPK1B	O75841	260 aa		13.71	□□□□□ -0.21
DDX55-204	ENST00000536079	IFNA17	P01571	189 aa		13.71	□□□□□ -0.21
DDX55-204	ENST00000536079	HLA-A	P01891	365 aa	Known RBP	13.71	□□□□□ -0.21
DDX55-204	ENST00000536079	HIST1H1B	P16401	226 aa	Known RBP	13.71	□□□□□ -0.21
DDX55-204	ENST00000536079	HSD17B13	Q7Z5P4	300 aa	Predicted RBP	13.71	□□□□□ -0.21
DDX55-204	ENST00000536079	PLEKHA3	Q9HB20	300 aa		13.71	□□□□□ -0.21
DDX55-204	ENST00000536079	CTNNBIP1	Q9NSA3	81 aa	Predicted RBP	13.71	□□□□□ -0.21
DDX55-204	ENST00000536079	SHPK	Q9UHJ6	478 aa		13.71	□□□□□ -0.21
DDX55-204	ENST00000536079	DHFR	P00374	187 aa		13.7	□□□□□ -0.22
DDX55-204	ENST00000536079	TCRB	P04435	133 aa		13.7	□□□□□ -0.22
DDX55-204	ENST00000536079	ANXA3	P12429	323 aa		13.7	□□□□□ -0.22
DDX55-204	ENST00000536079	DEFA6	Q01524	100 aa		13.7	□□□□□ -0.22
DDX55-204	ENST00000536079	KLF5	Q13887	457 aa	Predicted RBP	13.7	□□□□□ -0.22
DDX55-204	ENST00000536079	CLEC19A	Q6UXS0	136 aa		13.7	□□□□□ -0.22
DDX55-204	ENST00000536079	LRTM2	Q8N967	370 aa		13.7	□□□□□ -0.22
DDX55-204	ENST00000536079	OR52B4	Q8NGK2	314 aa		13.7	□□□□□ -0.22
DDX55-204	ENST00000536079	C20orf85	Q9H1P6	137 aa		13.7	□□□□□ -0.22
DDX55-204	ENST00000536079		K7EIM0	57 aa		13.69	□□□□□ -0.22
DDX55-204	ENST00000536079	OVOL1	O14753	267 aa		13.69	□□□□□ -0.22
DDX55-204	ENST00000536079	OR4E1	P0C645	316 aa		13.69	□□□□□ -0.22
DDX55-204	ENST00000536079	ASAH1	Q13510	395 aa		13.69	□□□□□ -0.22
DDX55-204	ENST00000536079	OR1P1	Q8NH06	330 aa		13.69	□□□□□ -0.22
DDX55-204	ENST00000536079	ZNF502	Q8TBZ5	544 aa		13.69	□□□□□ -0.22
DDX55-204	ENST00000536079	ZC4H2	Q9NQZ6	224 aa		13.69	□□□□□ -0.22
DDX55-204	ENST00000536079	TRAV6	A0A075B6T7	132 aa		13.68	□□□□□ -0.22
DDX55-204	ENST00000536079	SEC14L6	B5MCN3	397 aa		13.68	□□□□□ -0.22
DDX55-204	ENST00000536079		F8W735	103 aa	Predicted RBP	13.68	□□□□□ -0.22
DDX55-204	ENST00000536079	INS-IGF2	F8WCM5	200 aa		13.68	□□□□□ -0.22
DDX55-204	ENST00000536079	SULT1A3	P0DMM9	295 aa		13.68	□□□□□ -0.22
DDX55-204	ENST00000536079	SULT1A4	P0DMN0	295 aa		13.68	□□□□□ -0.22
DDX55-204	ENST00000536079	RNASE2	P10153	161 aa	Known RBP	13.68	□□□□□ -0.22
DDX55-204	ENST00000536079	SYNJ2BP	P57105	145 aa		13.68	□□□□□ -0.22
DDX55-204	ENST00000536079	SPCS3	P61009	180 aa		13.68	□□□□□ -0.22
DDX55-204	ENST00000536079	UBE2M	P61081	183 aa	Known RBP	13.68	□□□□□ -0.22
DDX55-204	ENST00000536079	SRPX	P78539	464 aa		13.68	□□□□□ -0.22
DDX55-204	ENST00000536079	DHRS2	Q13268	280 aa		13.68	□□□□□ -0.22
DDX55-204	ENST00000536079	PDLIM3	Q53GG5	364 aa	Predicted RBP	13.68	□□□□□ -0.22
DDX55-204	ENST00000536079	IL34	Q6ZMJ4	242 aa		13.68	□□□□□ -0.22
DDX55-204	ENST00000536079	ZNF114	Q8NC26	417 aa		13.68	□□□□□ -0.22
DDX55-204	ENST00000536079	OR52E5	Q8NH55	327 aa		13.68	□□□□□ -0.22
DDX55-204	ENST00000536079	EEF1AKMT3	Q96AZ1	226 aa		13.68	□□□□□ -0.22
DDX55-204	ENST00000536079		I3L2K1	104 aa		13.67	□□□□□ -0.22
DDX55-204	ENST00000536079	PITX3	O75364	302 aa		13.67	□□□□□ -0.22
DDX55-204	ENST00000536079	ADAP1	O75689	374 aa		13.67	□□□□□ -0.22
DDX55-204	ENST00000536079	OR2C1	O95371	312 aa		13.67	□□□□□ -0.22
DDX55-204	ENST00000536079	IGHV3-48	P01763	117 aa		13.67	□□□□□ -0.22
DDX55-204	ENST00000536079	CLEC3B	P05452	202 aa		13.67	□□□□□ -0.22
DDX55-204	ENST00000536079	HOXB5	P09067	269 aa		13.67	□□□□□ -0.22
DDX55-204	ENST00000536079	HOXA1	P49639	335 aa	Predicted RBP	13.67	□□□□□ -0.22
DDX55-204	ENST00000536079	SMCO1	Q147U7	214 aa		13.67	□□□□□ -0.22
DDX55-204	ENST00000536079	LYG2	Q86SG7	212 aa		13.67	□□□□□ -0.22
DDX55-204	ENST00000536079	SCARB1	Q8WTV0	552 aa		13.67	□□□□□ -0.22
DDX55-204	ENST00000536079	MISP3	Q96FF7	219 aa		13.67	□□□□□ -0.22
DDX55-204	ENST00000536079	PDCD10	Q9BUL8	212 aa		13.67	□□□□□ -0.22
DDX55-204	ENST00000536079	MPTX1	A8MV57	137 aa		13.66	□□□□□ -0.22
DDX55-204	ENST00000536079	WIPF1	O43516	503 aa		13.66	□□□□□ -0.22
DDX55-204	ENST00000536079	DUS4L	O95620	317 aa	Known RBP	13.66	□□□□□ -0.22
DDX55-204	ENST00000536079	EDN2	P20800	178 aa		13.66	□□□□□ -0.22
DDX55-204	ENST00000536079	ZP3	P21754	424 aa		13.66	□□□□□ -0.22
DDX55-204	ENST00000536079	ERH	P84090	104 aa	Known RBP	13.66	□□□□□ -0.22
DDX55-204	ENST00000536079	GGNBP1	Q5YKI7	109 aa		13.66	□□□□□ -0.22
DDX55-204	ENST00000536079	PVRIG	Q6DKI7	326 aa		13.66	□□□□□ -0.22
DDX55-204	ENST00000536079	HAPLN4	Q86UW8	402 aa		13.66	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms