RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 ZNF134P52741 427 aa6.6□□□□□ -1.35
NEDD8-207ENST00000533242 RNF212Q495C1 297 aa6.6□□□□□ -1.35
NEDD8-207ENST00000533242 HEPN1Q6WQI6 88 aa6.6□□□□□ -1.35
NEDD8-207ENST00000533242 OR5R1Q8NH85 324 aa6.6□□□□□ -1.35
NEDD8-207ENST00000533242 Q8WTZ3 238 aa6.6□□□□□ -1.35
NEDD8-207ENST00000533242 LEAP2Q969E1 77 aa6.6□□□□□ -1.35
NEDD8-207ENST00000533242 TOLLIPQ9H0E2 274 aa6.6□□□□□ -1.35
NEDD8-207ENST00000533242 FAM234AQ9H0X4 552 aa6.6□□□□□ -1.35
NEDD8-207ENST00000533242 TMPRSS5Q9H3S3 457 aa6.6□□□□□ -1.35
NEDD8-207ENST00000533242 TRAV38-1A0A0B4J264 116 aa6.6□□□□□ -1.35
NEDD8-207ENST00000533242 C1orf196B1AJZ1 125 aa6.6□□□□□ -1.35
NEDD8-207ENST00000533242 OR2C1O95371 312 aa6.6□□□□□ -1.35
NEDD8-207ENST00000533242 OR9G9P0C7N8 305 aa6.6□□□□□ -1.35
NEDD8-207ENST00000533242 TAGLN2P37802 199 aaKnown RBP6.6□□□□□ -1.35
NEDD8-207ENST00000533242 RAB5BP61020 215 aa6.6□□□□□ -1.35
NEDD8-207ENST00000533242 ARF6P62330 175 aa6.6□□□□□ -1.35
NEDD8-207ENST00000533242 RAB11AP62491 216 aa6.6□□□□□ -1.35
NEDD8-207ENST00000533242 SMIM21Q3B7S5 101 aa6.6□□□□□ -1.35
NEDD8-207ENST00000533242 RPL39P5Q59GN2 51 aa6.6□□□□□ -1.35
NEDD8-207ENST00000533242 VMO1Q7Z5L0 202 aa6.6□□□□□ -1.35
NEDD8-207ENST00000533242 VKORC1L1Q8N0U8 176 aa6.6□□□□□ -1.35
NEDD8-207ENST00000533242 SCGB1C1Q8TD33 95 aa6.6□□□□□ -1.35
NEDD8-207ENST00000533242 GATAD1Q8WUU5 269 aa6.6□□□□□ -1.35
NEDD8-207ENST00000533242 CFHR4Q92496 578 aa6.6□□□□□ -1.35
NEDD8-207ENST00000533242 SSX3Q99909 188 aa6.6□□□□□ -1.35
NEDD8-207ENST00000533242 SLC31A2O15432 143 aa6.59□□□□□ -1.35
NEDD8-207ENST00000533242 OR8U8P0C7N1 319 aa6.59□□□□□ -1.35
NEDD8-207ENST00000533242 BCL2P10415 239 aa6.59□□□□□ -1.35
NEDD8-207ENST00000533242 HBG1P69891 147 aa6.59□□□□□ -1.35
NEDD8-207ENST00000533242 HBG2P69892 147 aa6.59□□□□□ -1.35
NEDD8-207ENST00000533242 ELOBQ15370 118 aa6.59□□□□□ -1.35
NEDD8-207ENST00000533242 KHDC3LQ587J8 217 aa6.59□□□□□ -1.35
NEDD8-207ENST00000533242 DMRTA1Q5VZB9 504 aa6.59□□□□□ -1.35
NEDD8-207ENST00000533242 MBD3L1Q8WWY6 194 aa6.59□□□□□ -1.35
NEDD8-207ENST00000533242 PSMG3Q9BT73 122 aaPredicted RBP6.59□□□□□ -1.35
NEDD8-207ENST00000533242 SMDT1Q9H4I9 107 aa6.59□□□□□ -1.35
NEDD8-207ENST00000533242 TGIF2-C20orf24A0A0A6YYL0 155 aa6.59□□□□□ -1.36
NEDD8-207ENST00000533242 TRAV3A0A0B4J244 114 aa6.59□□□□□ -1.36
NEDD8-207ENST00000533242 MARCH11A6NNE9 402 aa6.59□□□□□ -1.36
NEDD8-207ENST00000533242 NQO2P16083 231 aa6.59□□□□□ -1.36
NEDD8-207ENST00000533242 MAS1LP35410 378 aa6.59□□□□□ -1.36
NEDD8-207ENST00000533242 MEOX2P50222 304 aa6.59□□□□□ -1.36
NEDD8-207ENST00000533242 FABP9Q0Z7S8 132 aa6.59□□□□□ -1.36
NEDD8-207ENST00000533242 DPPA3Q6W0C5 159 aa6.59□□□□□ -1.36
NEDD8-207ENST00000533242 SSX9Q7RTT3 188 aa6.59□□□□□ -1.36
NEDD8-207ENST00000533242 SLC16A13Q7RTY0 426 aa6.59□□□□□ -1.36
NEDD8-207ENST00000533242 FAM90A1Q86YD7 464 aa6.59□□□□□ -1.36
NEDD8-207ENST00000533242 Q8N7P7 452 aa6.59□□□□□ -1.36
NEDD8-207ENST00000533242 DTD1Q8TEA8 209 aa6.59□□□□□ -1.36
NEDD8-207ENST00000533242 QTRT1Q9BXR0 403 aaKnown RBP6.59□□□□□ -1.36
NEDD8-207ENST00000533242 SLC25A22Q9H936 323 aa6.59□□□□□ -1.36
NEDD8-207ENST00000533242 AURKAIP1Q9NWT8 199 aaPredicted RBP6.59□□□□□ -1.36
NEDD8-207ENST00000533242 KAAG1Q9UBP8 84 aa6.59□□□□□ -1.36
NEDD8-207ENST00000533242 RPUSD1Q9UJJ7 312 aaKnown RBP6.59□□□□□ -1.36
NEDD8-207ENST00000533242 MAP1LC3B2A6NCE7 125 aa6.58□□□□□ -1.36
NEDD8-207ENST00000533242 FAM90A26D6RGX4 464 aa6.58□□□□□ -1.36
NEDD8-207ENST00000533242 UBE2CO00762 179 aa6.58□□□□□ -1.36
NEDD8-207ENST00000533242 DVL1O14640 695 aa6.58□□□□□ -1.36
NEDD8-207ENST00000533242 NPFFO15130 113 aa6.58□□□□□ -1.36
NEDD8-207ENST00000533242 FCN3O75636 299 aa6.58□□□□□ -1.36
NEDD8-207ENST00000533242 HBE1P02100 147 aa6.58□□□□□ -1.36
NEDD8-207ENST00000533242 GYPAP02724 150 aa6.58□□□□□ -1.36
NEDD8-207ENST00000533242 DUTP33316 252 aaKnown RBP6.58□□□□□ -1.36
NEDD8-207ENST00000533242 CD81P60033 236 aa6.58□□□□□ -1.36
NEDD8-207ENST00000533242 MORN2Q502X0 79 aa6.58□□□□□ -1.36
NEDD8-207ENST00000533242 TMEM41BQ5BJD5 291 aa6.58□□□□□ -1.36
NEDD8-207ENST00000533242 GCSAMLQ5JQS6 135 aa6.58□□□□□ -1.36
NEDD8-207ENST00000533242 ZNF561Q8N587 486 aa6.58□□□□□ -1.36
NEDD8-207ENST00000533242 ZBTB34Q8NCN2 500 aa6.58□□□□□ -1.36
NEDD8-207ENST00000533242 LY6G5BQ8NDX9 201 aa6.58□□□□□ -1.36
NEDD8-207ENST00000533242 MAP1LC3BQ9GZQ8 125 aa6.58□□□□□ -1.36
NEDD8-207ENST00000533242 CTNNBIP1Q9NSA3 81 aaPredicted RBP6.58□□□□□ -1.36
NEDD8-207ENST00000533242 TNCP24821 2201 aa6.58□□□□□ -1.36
NEDD8-207ENST00000533242 C15orf62A8K5M9 175 aa6.58□□□□□ -1.36
NEDD8-207ENST00000533242 FCGR3BO75015 233 aa6.58□□□□□ -1.36
NEDD8-207ENST00000533242 SERF2P84101 59 aa6.58□□□□□ -1.36
NEDD8-207ENST00000533242 CATR1Q13166 79 aa6.58□□□□□ -1.36
NEDD8-207ENST00000533242 TEX36Q5VZQ5 186 aa6.58□□□□□ -1.36
NEDD8-207ENST00000533242 H2BFWTQ7Z2G1 175 aa6.58□□□□□ -1.36
NEDD8-207ENST00000533242 MALSU1Q96EH3 234 aa6.58□□□□□ -1.36
NEDD8-207ENST00000533242 TVP23CQ96ET8 276 aa6.58□□□□□ -1.36
NEDD8-207ENST00000533242 NIPSNAP3BQ9BS92 247 aa6.58□□□□□ -1.36
NEDD8-207ENST00000533242 IFI27L2Q9H2X8 130 aa6.58□□□□□ -1.36
NEDD8-207ENST00000533242 IFITM10A6NMD0 228 aa6.57□□□□□ -1.36
NEDD8-207ENST00000533242 CEBPZOSA8MTT3 80 aa6.57□□□□□ -1.36
NEDD8-207ENST00000533242 RAB29O14966 203 aa6.57□□□□□ -1.36
NEDD8-207ENST00000533242 RBMXL2O75526 392 aaKnown RBP6.57□□□□□ -1.36
NEDD8-207ENST00000533242 IFNA4P05014 189 aa6.57□□□□□ -1.36
NEDD8-207ENST00000533242 RPS10P46783 165 aaKnown RBP6.57□□□□□ -1.36
NEDD8-207ENST00000533242 EDDM3BP56851 147 aa6.57□□□□□ -1.36
NEDD8-207ENST00000533242 HTD2P86397 168 aa6.57□□□□□ -1.36
NEDD8-207ENST00000533242 OXLD1Q5BKU9 147 aa6.57□□□□□ -1.36
NEDD8-207ENST00000533242 TCF23Q7RTU1 214 aa6.57□□□□□ -1.36
NEDD8-207ENST00000533242 CENPVQ7Z7K6 275 aaPredicted RBP6.57□□□□□ -1.36
NEDD8-207ENST00000533242 KLHDC1Q8N7A1 406 aa6.57□□□□□ -1.36
NEDD8-207ENST00000533242 OR4C13Q8NGP0 309 aa6.57□□□□□ -1.36
NEDD8-207ENST00000533242 TMEM170AQ8WVE7 144 aa6.57□□□□□ -1.36
NEDD8-207ENST00000533242 R3HDM4Q96D70 268 aa6.57□□□□□ -1.36
NEDD8-207ENST00000533242 PARD6GQ9BYG4 376 aaPredicted RBP6.57□□□□□ -1.36
NEDD8-207ENST00000533242 ONECUT1Q9UBC0 465 aa6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms